Wall clock time and date at job start Tue Mar 31 2020 11:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46494 * 120.00347 * 2 1 4 4 C 1.39194 * 119.99910 * 179.97438 * 2 1 3 5 5 C 1.39422 * 120.83429 * 354.36082 * 4 2 1 6 6 C 1.38227 * 119.26598 * 180.02562 * 5 4 2 7 7 N 1.31645 * 120.99391 * 0.02562 * 6 5 4 8 8 C 1.32833 * 121.83104 * 359.97438 * 7 6 5 9 9 C 1.48183 * 119.69228 * 179.97438 * 8 7 6 10 10 O 1.21507 * 119.99941 * 172.31298 * 9 8 7 11 11 N 1.34783 * 119.99840 * 352.31502 * 9 8 7 12 12 C 1.46928 * 120.63030 * 349.06622 * 11 9 8 13 13 C 1.52761 * 109.00555 * 233.58169 * 12 11 9 14 14 C 1.53038 * 109.38741 * 305.59003 * 13 12 11 15 15 C 1.52996 * 109.45129 * 181.25249 * 14 13 12 16 16 C 1.50704 * 109.46676 * 64.93908 * 15 14 13 17 17 H 1.07993 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99735 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99960 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99822 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46817 * 90.00193 * 20 18 16 22 22 H 1.48503 * 109.46847 * 209.99910 * 20 18 16 23 23 H 1.48498 * 109.47211 * 330.00041 * 20 18 16 24 24 C 1.53048 * 109.53676 * 61.23716 * 14 13 12 25 25 C 1.46925 * 120.62758 * 169.34472 * 11 9 8 26 26 C 1.39034 * 120.61788 * 0.02562 * 8 7 6 27 27 H 1.08994 * 109.47120 * 270.00095 * 1 2 3 28 28 H 1.09002 * 109.46829 * 30.00535 * 1 2 3 29 29 H 1.09000 * 109.46953 * 149.99905 * 1 2 3 30 30 H 1.08996 * 109.47664 * 185.08150 * 3 2 1 31 31 H 1.09009 * 109.47007 * 305.07941 * 3 2 1 32 32 H 1.08998 * 109.47405 * 65.07221 * 3 2 1 33 33 H 1.07998 * 120.36546 * 0.02562 * 5 4 2 34 34 H 1.07999 * 119.50225 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.58635 * 353.41735 * 12 11 9 36 36 H 1.09000 * 109.58385 * 113.84345 * 12 11 9 37 37 H 1.08998 * 109.56029 * 185.55295 * 13 12 11 38 38 H 1.09001 * 109.35889 * 65.50358 * 13 12 11 39 39 H 1.08996 * 109.45629 * 301.22337 * 14 13 12 40 40 H 1.09001 * 109.47447 * 184.93588 * 15 14 13 41 41 H 1.09004 * 109.47275 * 304.94198 * 15 14 13 42 42 H 0.96997 * 119.99570 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.49463 * 178.68027 * 24 14 13 44 44 H 1.09007 * 109.51456 * 58.60615 * 24 14 13 45 45 H 1.09000 * 109.58835 * 246.15372 * 25 11 9 46 46 H 1.08997 * 109.58547 * 6.44119 * 25 11 9 47 47 H 1.07993 * 120.52126 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1609 -1.2055 0.0005 5 6 1.4865 -2.4200 0.1187 6 6 2.2100 -3.5978 0.1161 7 7 3.5216 -3.5874 0.0044 8 6 4.2060 -2.4547 -0.1105 9 6 5.6821 -2.4982 -0.2328 10 8 6.3017 -1.4821 -0.4778 11 7 6.3375 -3.6650 -0.0724 12 6 5.6429 -4.8474 0.4552 13 6 6.4228 -5.3899 1.6515 14 6 7.8740 -5.6453 1.2383 15 6 8.6489 -6.2181 2.4268 16 6 8.0906 -7.5713 2.7851 17 1 7.2661 -7.9818 2.2213 18 6 8.6327 -8.2852 3.8328 19 7 9.6372 -7.7855 4.5190 20 14 7.9404 -9.9622 4.2773 21 1 8.6605 -11.0131 3.5143 22 1 8.1150 -10.1998 5.7328 23 1 6.4953 -10.0068 3.9384 24 6 8.5191 -4.3300 0.7953 25 6 7.7616 -3.7770 -0.4160 26 6 3.5504 -1.2287 -0.1160 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 3.2656 1.0715 -0.0910 31 1 1.8677 1.8786 -0.8411 32 1 2.0041 1.7999 0.9319 33 1 0.4106 -2.4402 0.2113 34 1 1.6914 -4.5407 0.2070 35 1 4.6376 -4.5696 0.7717 36 1 5.5863 -5.6132 -0.3183 37 1 5.9711 -6.3227 1.9889 38 1 6.3979 -4.6596 2.4603 39 1 7.8967 -6.3569 0.4130 40 1 9.7011 -6.3181 2.1604 41 1 8.5523 -5.5475 3.2807 42 1 10.0182 -8.2876 5.2563 43 1 9.5594 -4.5085 0.5235 44 1 8.4749 -3.6095 1.6121 45 1 7.8813 -4.4538 -1.2619 46 1 8.1531 -2.7936 -0.6765 47 1 4.1083 -0.3088 -0.2099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565364322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:47 Heat of formation + Delta-G solvation = 19.082936 kcal Electronic energy + Delta-G solvation = -26549.431553 eV Core-core repulsion = 22925.632082 eV Total energy + Delta-G solvation = -3623.799471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91865 -39.38148 -37.29332 -37.14457 -33.91998 -32.28493 -31.67074 -31.46803 -30.38450 -28.81310 -27.91535 -25.87419 -25.01154 -23.60246 -22.59633 -22.37080 -21.35176 -19.95773 -18.87655 -17.60183 -17.26368 -16.25849 -16.21758 -15.72716 -15.66674 -15.35411 -15.07574 -14.68815 -14.49897 -14.35495 -13.79247 -13.65155 -13.44780 -13.09805 -13.01687 -12.75947 -12.72164 -12.61843 -12.52282 -12.08218 -11.69860 -11.59795 -11.10092 -10.95138 -10.88068 -10.63301 -10.58564 -10.41794 -10.11810 -9.99342 -9.68382 -9.35766 -9.27313 -8.89666 -8.69902 -8.29145 -8.16042 -7.99642 -5.93976 -3.95282 0.63484 1.22875 2.56980 2.83749 3.21994 3.35059 3.41410 3.44293 3.83758 4.15292 4.42025 4.46480 4.50430 4.74259 4.84482 4.86486 4.98242 5.05232 5.12966 5.21506 5.30220 5.41305 5.43830 5.48211 5.57942 5.60428 5.67701 5.75366 5.81692 5.88822 6.08458 6.16658 6.24582 6.51882 6.55886 6.57324 6.68590 6.73065 6.88287 6.95738 7.12397 7.14560 7.26310 7.63945 7.74621 7.80330 7.90697 8.06850 8.32981 8.49978 9.11438 9.67959 11.17438 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.002829 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.686175 B = 9894.243028 C =10815.469819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.627 5.627 3 C 0.083 3.917 4 C 0.243 3.757 5 C -0.236 4.236 6 C 0.135 3.865 7 N -0.487 5.487 8 C 0.127 3.873 9 C 0.566 3.434 10 O -0.548 6.548 11 N -0.581 5.581 12 C 0.076 3.924 13 C -0.120 4.120 14 C -0.082 4.082 15 C 0.027 3.973 16 C -0.513 4.513 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 C -0.128 4.128 25 C 0.109 3.891 26 C -0.191 4.191 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.135 0.865 34 H 0.163 0.837 35 H 0.138 0.862 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.603 15.669 -10.909 27.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.339 5.339 3 C -0.059 4.059 4 C 0.133 3.867 5 C -0.261 4.261 6 C -0.023 4.023 7 N -0.202 5.202 8 C -0.009 4.009 9 C 0.352 3.648 10 O -0.426 6.426 11 N -0.311 5.311 12 C -0.046 4.046 13 C -0.158 4.158 14 C -0.101 4.101 15 C -0.010 4.010 16 C -0.551 4.551 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.166 4.166 25 C -0.013 4.013 26 C -0.217 4.217 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.180 0.820 35 H 0.154 0.846 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.102 0.898 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.769 15.571 -10.901 26.713 hybrid contribution -0.779 -0.264 0.440 0.933 sum -19.548 15.307 -10.461 26.942 Atomic orbital electron populations 1.21682 0.78856 1.02974 1.01598 1.46269 1.05405 1.03111 1.79078 1.21818 0.98148 0.84482 1.01479 1.17982 0.90985 0.86468 0.91280 1.21778 1.01322 0.91872 1.11127 1.22700 0.89471 0.97746 0.92342 1.67814 1.08517 1.27950 1.15913 1.20945 0.94222 0.88988 0.96776 1.17921 0.85621 0.83445 0.77766 1.90725 1.67775 1.33367 1.50762 1.48014 1.10836 1.10885 1.61361 1.22940 0.99365 0.85964 0.96292 1.21864 0.96326 1.01282 0.96322 1.21210 0.94722 0.94086 1.00051 1.19129 0.94851 0.95301 0.91688 1.21260 1.16732 1.02514 1.14600 0.92556 1.25032 0.95142 0.97920 0.96492 1.69972 1.24570 1.38071 1.21034 0.86645 0.79455 0.84726 0.77477 1.20791 1.21384 1.19859 1.22006 0.99061 0.98712 0.96815 1.21740 0.79828 1.01858 0.97832 1.21583 0.92543 0.99689 1.07841 0.92923 0.91157 0.91074 0.89885 0.92105 0.92404 0.84681 0.82028 0.84559 0.92207 0.89904 0.92890 0.92451 0.96729 0.96719 0.93137 0.91247 0.92131 0.91642 0.89806 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 10.13 59.84 0.61 1.05 16 2 N -0.63 -4.89 3.40 -187.37 -0.64 -5.52 16 3 C 0.08 0.53 10.63 59.84 0.64 1.16 16 4 C 0.24 2.47 6.56 -83.62 -0.55 1.92 16 5 C -0.24 -2.10 9.23 -39.14 -0.36 -2.46 16 6 C 0.14 1.35 11.17 -17.64 -0.20 1.16 16 7 N -0.49 -6.43 6.17 -9.89 -0.06 -6.49 16 8 C 0.13 1.84 6.57 -83.05 -0.55 1.30 16 9 C 0.57 9.59 7.64 -12.17 -0.09 9.50 16 10 O -0.55 -10.30 15.80 5.36 0.08 -10.21 16 11 N -0.58 -9.75 2.98 -174.02 -0.52 -10.26 16 12 C 0.08 1.24 5.78 -3.93 -0.02 1.22 16 13 C -0.12 -2.29 5.17 -26.83 -0.14 -2.43 16 14 C -0.08 -1.69 2.10 -90.58 -0.19 -1.88 16 15 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 16 C -0.51 -14.31 8.39 -34.44 -0.29 -14.60 16 17 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 18 C 0.05 1.57 5.46 -17.81 -0.10 1.48 16 19 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 20 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.13 -2.32 5.36 -26.61 -0.14 -2.46 16 25 C 0.11 1.79 6.45 -3.71 -0.02 1.76 16 26 C -0.19 -2.37 8.89 -38.83 -0.35 -2.71 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 29 H 0.07 0.30 6.50 -51.93 -0.34 -0.04 16 30 H 0.08 0.60 5.39 -51.93 -0.28 0.32 16 31 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.14 0.83 6.43 -52.49 -0.34 0.49 16 34 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.14 2.12 4.19 -77.07 -0.32 1.80 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.66 6.91 -51.93 -0.36 1.30 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.08 1.36 7.01 -51.93 -0.36 1.00 16 47 H 0.15 1.76 5.47 -52.49 -0.29 1.48 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -33.56 369.42 -9.01 -42.57 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.29 Total: -0.44 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.88 Total: -5.42 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.48 Total: -48.74 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.56 -9.01 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565364322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.657 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds