Wall clock time and date at job start Tue Mar 31 2020 11:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46494 * 120.00347 * 2 1 4 4 C 1.39194 * 119.99910 * 179.97438 * 2 1 3 5 5 C 1.39422 * 120.83429 * 354.36082 * 4 2 1 6 6 C 1.38227 * 119.26598 * 180.02562 * 5 4 2 7 7 N 1.31645 * 120.99391 * 0.02562 * 6 5 4 8 8 C 1.32833 * 121.83104 * 359.97438 * 7 6 5 9 9 C 1.48183 * 119.69228 * 179.97438 * 8 7 6 10 10 O 1.21507 * 119.99941 * 172.31298 * 9 8 7 11 11 N 1.34783 * 119.99840 * 352.31502 * 9 8 7 12 12 C 1.46928 * 120.63030 * 349.06622 * 11 9 8 13 13 C 1.52761 * 109.00555 * 233.58169 * 12 11 9 14 14 C 1.53038 * 109.38741 * 305.59003 * 13 12 11 15 15 C 1.52996 * 109.45129 * 181.25249 * 14 13 12 16 16 C 1.50704 * 109.46676 * 64.93908 * 15 14 13 17 17 H 1.07993 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99735 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99960 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99822 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46817 * 90.00193 * 20 18 16 22 22 H 1.48503 * 109.46847 * 209.99910 * 20 18 16 23 23 H 1.48498 * 109.47211 * 330.00041 * 20 18 16 24 24 C 1.53048 * 109.53676 * 61.23716 * 14 13 12 25 25 C 1.46925 * 120.62758 * 169.34472 * 11 9 8 26 26 C 1.39034 * 120.61788 * 0.02562 * 8 7 6 27 27 H 1.08994 * 109.47120 * 270.00095 * 1 2 3 28 28 H 1.09002 * 109.46829 * 30.00535 * 1 2 3 29 29 H 1.09000 * 109.46953 * 149.99905 * 1 2 3 30 30 H 1.08996 * 109.47664 * 185.08150 * 3 2 1 31 31 H 1.09009 * 109.47007 * 305.07941 * 3 2 1 32 32 H 1.08998 * 109.47405 * 65.07221 * 3 2 1 33 33 H 1.07998 * 120.36546 * 0.02562 * 5 4 2 34 34 H 1.07999 * 119.50225 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.58635 * 353.41735 * 12 11 9 36 36 H 1.09000 * 109.58385 * 113.84345 * 12 11 9 37 37 H 1.08998 * 109.56029 * 185.55295 * 13 12 11 38 38 H 1.09001 * 109.35889 * 65.50358 * 13 12 11 39 39 H 1.08996 * 109.45629 * 301.22337 * 14 13 12 40 40 H 1.09001 * 109.47447 * 184.93588 * 15 14 13 41 41 H 1.09004 * 109.47275 * 304.94198 * 15 14 13 42 42 H 0.96997 * 119.99570 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.49463 * 178.68027 * 24 14 13 44 44 H 1.09007 * 109.51456 * 58.60615 * 24 14 13 45 45 H 1.09000 * 109.58835 * 246.15372 * 25 11 9 46 46 H 1.08997 * 109.58547 * 6.44119 * 25 11 9 47 47 H 1.07993 * 120.52126 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1609 -1.2055 0.0005 5 6 1.4865 -2.4200 0.1187 6 6 2.2100 -3.5978 0.1161 7 7 3.5216 -3.5874 0.0044 8 6 4.2060 -2.4547 -0.1105 9 6 5.6821 -2.4982 -0.2328 10 8 6.3017 -1.4821 -0.4778 11 7 6.3375 -3.6650 -0.0724 12 6 5.6429 -4.8474 0.4552 13 6 6.4228 -5.3899 1.6515 14 6 7.8740 -5.6453 1.2383 15 6 8.6489 -6.2181 2.4268 16 6 8.0906 -7.5713 2.7851 17 1 7.2661 -7.9818 2.2213 18 6 8.6327 -8.2852 3.8328 19 7 9.6372 -7.7855 4.5190 20 14 7.9404 -9.9622 4.2773 21 1 8.6605 -11.0131 3.5143 22 1 8.1150 -10.1998 5.7328 23 1 6.4953 -10.0068 3.9384 24 6 8.5191 -4.3300 0.7953 25 6 7.7616 -3.7770 -0.4160 26 6 3.5504 -1.2287 -0.1160 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 3.2656 1.0715 -0.0910 31 1 1.8677 1.8786 -0.8411 32 1 2.0041 1.7999 0.9319 33 1 0.4106 -2.4402 0.2113 34 1 1.6914 -4.5407 0.2070 35 1 4.6376 -4.5696 0.7717 36 1 5.5863 -5.6132 -0.3183 37 1 5.9711 -6.3227 1.9889 38 1 6.3979 -4.6596 2.4603 39 1 7.8967 -6.3569 0.4130 40 1 9.7011 -6.3181 2.1604 41 1 8.5523 -5.5475 3.2807 42 1 10.0182 -8.2876 5.2563 43 1 9.5594 -4.5085 0.5235 44 1 8.4749 -3.6095 1.6121 45 1 7.8813 -4.4538 -1.2619 46 1 8.1531 -2.7936 -0.6765 47 1 4.1083 -0.3088 -0.2099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565364322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:47 Heat of formation + Delta-G solvation = -0.695208 kcal Electronic energy + Delta-G solvation = -26550.289197 eV Core-core repulsion = 22925.632082 eV Total energy + Delta-G solvation = -3624.657115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.91291 -40.50504 -38.69964 -37.92410 -35.68939 -34.04354 -32.77131 -32.31970 -31.65001 -29.89954 -29.20194 -26.80843 -26.32051 -24.92811 -24.03639 -23.39155 -22.67916 -21.34383 -20.21145 -18.61275 -18.39107 -18.19206 -17.12239 -16.88209 -16.57238 -16.49112 -16.19439 -15.99085 -15.59173 -15.17386 -15.05768 -14.94750 -14.75108 -14.55225 -14.33465 -14.14664 -13.73886 -13.42443 -13.34972 -13.25224 -13.02736 -12.94682 -12.71606 -12.48086 -12.32631 -12.24573 -12.10094 -11.75998 -11.61000 -11.36080 -11.32925 -11.15862 -10.83362 -10.51843 -10.23145 -9.83698 -9.55109 -8.64272 -8.14608 -6.24206 -0.28862 0.43599 1.42490 1.43814 1.54793 1.71299 1.87553 2.13911 2.44661 2.90769 3.13213 3.18767 3.65609 3.84885 3.96015 4.07776 4.11689 4.13728 4.19142 4.27875 4.34958 4.44441 4.47998 4.50801 4.65620 4.69494 4.72340 4.74538 4.79289 4.88283 4.92136 4.94174 4.98862 5.00288 5.09843 5.21562 5.31935 5.36365 5.42754 5.52908 5.59486 5.76933 5.88681 5.91064 6.11778 6.26091 6.31102 6.39408 6.82466 6.92119 7.12407 7.44217 8.97599 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.002829 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.686175 B = 9894.243028 C =10815.469819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.628 5.628 3 C 0.078 3.922 4 C 0.240 3.760 5 C -0.223 4.223 6 C 0.132 3.868 7 N -0.509 5.509 8 C 0.102 3.898 9 C 0.561 3.439 10 O -0.576 6.576 11 N -0.587 5.587 12 C 0.088 3.912 13 C -0.112 4.112 14 C -0.074 4.074 15 C 0.033 3.967 16 C -0.525 4.525 17 H 0.067 0.933 18 C -0.006 4.006 19 N -0.939 5.939 20 Si 0.963 3.037 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.258 1.258 24 C -0.120 4.120 25 C 0.115 3.885 26 C -0.200 4.200 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.170 0.830 34 H 0.194 0.806 35 H 0.152 0.848 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.063 0.937 40 H -0.013 1.013 41 H -0.018 1.018 42 H 0.261 0.739 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.195 15.230 -11.921 30.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.337 5.337 3 C -0.065 4.065 4 C 0.128 3.872 5 C -0.248 4.248 6 C -0.025 4.025 7 N -0.225 5.225 8 C -0.033 4.033 9 C 0.350 3.650 10 O -0.457 6.457 11 N -0.317 5.317 12 C -0.033 4.033 13 C -0.150 4.150 14 C -0.093 4.093 15 C -0.004 4.004 16 C -0.563 4.563 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.580 5.580 20 Si 0.787 3.213 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.182 1.182 24 C -0.159 4.159 25 C -0.007 4.007 26 C -0.227 4.227 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.187 0.813 34 H 0.211 0.789 35 H 0.168 0.832 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.005 0.995 41 H 0.000 1.000 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.396 15.154 -11.929 29.556 hybrid contribution 0.260 -0.007 0.771 0.813 sum -22.136 15.148 -11.158 29.051 Atomic orbital electron populations 1.21924 0.76812 1.04416 1.02538 1.46569 1.06712 1.02628 1.77826 1.21930 0.97377 0.84330 1.02815 1.18119 0.90264 0.88037 0.90818 1.22119 1.02873 0.90775 1.09027 1.23250 0.88429 0.99614 0.91245 1.67567 1.10214 1.27498 1.17209 1.20600 0.92805 0.90284 0.99615 1.18399 0.87002 0.82817 0.76830 1.90689 1.68816 1.34140 1.52035 1.48099 1.10899 1.11157 1.61538 1.22911 0.99346 0.85927 0.95125 1.21757 0.95542 1.00483 0.97253 1.21066 0.95247 0.95090 0.97860 1.19020 0.94049 0.94674 0.92643 1.21662 1.16835 1.03159 1.14681 0.91526 1.26008 0.95424 1.02347 0.96463 1.70126 1.26155 1.39972 1.21727 0.85479 0.79412 0.79334 0.77046 1.19968 1.21267 1.18214 1.21894 0.99673 0.97025 0.97258 1.21685 0.79728 1.02158 0.97172 1.21585 0.93884 0.98784 1.08437 0.92122 0.89449 0.90027 0.91363 0.90332 0.91338 0.81310 0.78883 0.83187 0.91101 0.90784 0.94669 0.91887 0.99477 0.99979 0.93065 0.90649 0.93831 0.89699 0.89773 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.13 127.77 1.29 1.81 16 2 N -0.63 -8.20 3.40 -746.73 -2.54 -10.73 16 3 C 0.08 0.86 10.63 127.77 1.36 2.22 16 4 C 0.24 4.38 6.56 38.55 0.25 4.64 16 5 C -0.22 -3.23 9.23 22.55 0.21 -3.02 16 6 C 0.13 2.27 11.17 84.72 0.95 3.21 16 7 N -0.51 -12.72 6.17 -185.22 -1.14 -13.87 16 8 C 0.10 2.94 6.57 41.83 0.27 3.22 16 9 C 0.56 19.31 7.64 86.89 0.66 19.97 16 10 O -0.58 -22.32 15.80 -3.74 -0.06 -22.38 16 11 N -0.59 -19.71 2.98 -822.76 -2.45 -22.16 16 12 C 0.09 2.82 5.78 86.22 0.50 3.32 16 13 C -0.11 -4.34 5.17 30.53 0.16 -4.18 16 14 C -0.07 -3.12 2.10 -10.77 -0.02 -3.14 16 15 C 0.03 1.79 4.45 29.85 0.13 1.92 16 16 C -0.53 -29.77 8.39 25.60 0.21 -29.55 16 17 H 0.07 3.56 7.06 -2.91 -0.02 3.54 16 18 C -0.01 -0.33 5.46 84.66 0.46 0.14 16 19 N -0.94 -58.45 13.29 21.45 0.28 -58.17 16 20 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 C -0.12 -4.49 5.36 30.67 0.16 -4.32 16 25 C 0.11 3.74 6.45 86.36 0.56 4.30 16 26 C -0.20 -4.92 8.89 22.75 0.20 -4.72 16 27 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.09 0.26 8.07 -2.39 -0.02 0.24 16 29 H 0.08 0.34 6.50 -2.39 -0.02 0.32 16 30 H 0.07 0.97 5.39 -2.39 -0.01 0.96 16 31 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.17 1.25 6.43 -2.91 -0.02 1.23 16 34 H 0.19 1.96 8.06 -2.91 -0.02 1.93 16 35 H 0.15 4.52 4.19 -52.03 -0.22 4.30 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.07 2.97 6.91 -2.39 -0.02 2.96 16 38 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 40 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 41 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 42 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 43 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.08 2.77 7.01 -2.39 -0.02 2.75 16 47 H 0.14 3.48 5.47 -2.91 -0.02 3.46 16 Total: -1.00 -74.96 369.42 4.25 -70.71 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.76 Total: 14.20 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 7.37 Total: -4.19 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -5.84 Total: -104.93 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.06 Total: -22.38 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -74.96 4.25 -70.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565364322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.019 kcal (2) G-P(sol) polarization free energy of solvation -74.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds