Wall clock time and date at job start Tue Mar 31 2020 11:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99668 * 2 1 4 4 C 1.50699 * 109.46727 * 293.94579 * 3 2 1 5 5 H 1.07994 * 120.00404 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99547 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00372 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99838 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46841 * 90.00226 * 8 6 4 10 10 H 1.48495 * 109.47046 * 210.00269 * 8 6 4 11 11 H 1.48500 * 109.47087 * 330.00872 * 8 6 4 12 12 C 1.46899 * 110.99753 * 123.95013 * 2 1 3 13 13 C 1.52998 * 109.47362 * 66.04994 * 12 2 1 14 14 H 1.08998 * 109.46732 * 304.99985 * 13 12 2 15 15 O 1.42899 * 109.47279 * 64.99636 * 13 12 2 16 16 C 1.53003 * 109.47202 * 185.00011 * 13 12 2 17 17 N 1.46903 * 109.47090 * 179.97438 * 16 13 12 18 18 C 1.46893 * 110.99924 * 179.97438 * 17 16 13 19 19 C 1.50706 * 109.47176 * 179.97438 * 18 17 16 20 20 C 1.37787 * 120.11034 * 259.72708 * 19 18 17 21 21 C 1.38792 * 120.66254 * 179.76387 * 20 19 18 22 22 C 1.36659 * 120.52786 * 0.51286 * 21 20 19 23 23 C 1.39591 * 119.76699 * 359.74773 * 22 21 20 24 24 C 1.46491 * 134.03514 * 179.97438 * 23 22 21 25 25 C 1.34236 * 106.99791 * 180.02562 * 24 23 22 26 26 N 1.36839 * 109.93874 * 359.97438 * 25 24 23 27 27 H 0.96995 * 125.06252 * 179.97438 * 26 25 24 28 28 C 1.37695 * 109.87617 * 0.02562 * 26 25 24 29 29 H 1.08999 * 109.47704 * 296.04778 * 1 2 3 30 30 H 1.08998 * 109.47140 * 56.05291 * 1 2 3 31 31 H 1.09008 * 109.46978 * 176.04825 * 1 2 3 32 32 H 1.08995 * 109.47593 * 53.95188 * 3 2 1 33 33 H 1.09006 * 109.46603 * 173.95367 * 3 2 1 34 34 H 0.96996 * 120.00268 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.47420 * 306.04737 * 12 2 1 36 36 H 1.09005 * 109.47091 * 186.05222 * 12 2 1 37 37 H 0.96700 * 113.99588 * 59.99856 * 15 13 12 38 38 H 1.08993 * 109.47042 * 60.00113 * 16 13 12 39 39 H 1.09003 * 109.46902 * 299.99343 * 16 13 12 40 40 H 1.00904 * 110.99923 * 56.04649 * 17 16 13 41 41 H 1.09001 * 109.46739 * 60.00281 * 18 17 16 42 42 H 1.09000 * 109.47767 * 300.00540 * 18 17 16 43 43 H 1.07994 * 119.66925 * 0.02562 * 20 19 18 44 44 H 1.08000 * 119.73712 * 180.23830 * 21 20 19 45 45 H 1.08007 * 120.11864 * 179.76745 * 22 21 20 46 46 H 1.07993 * 126.49986 * 0.02562 * 24 23 22 47 47 H 1.07998 * 125.03007 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0470 -1.2985 5 1 1.0741 1.5113 -2.0486 6 6 2.0267 3.3494 -1.5286 7 7 2.7117 4.0019 -0.6150 8 14 1.5819 4.1871 -3.1379 9 1 0.2693 4.8671 -2.9957 10 1 2.6238 5.1885 -3.4792 11 1 1.4986 3.1714 -4.2181 12 6 1.9954 -0.7659 1.1376 13 6 1.6315 -2.2425 0.9705 14 1 0.5532 -2.3388 0.8434 15 8 2.2956 -2.7696 -0.1798 16 6 2.0699 -3.0197 2.2134 17 7 1.7200 -4.4374 2.0531 18 6 2.1274 -5.2165 3.2299 19 6 1.7524 -6.6624 3.0296 20 6 0.6178 -7.1708 3.6236 21 6 0.2590 -8.4993 3.4430 22 6 1.0315 -9.3295 2.6803 23 6 2.1880 -8.8367 2.0736 24 6 3.2187 -9.4270 1.2161 25 6 4.1012 -8.4548 0.9372 26 7 3.7199 -7.2898 1.5455 27 1 4.2004 -6.4491 1.4900 28 6 2.5532 -7.4892 2.2490 29 1 -0.3634 0.4512 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3633 -1.0253 -0.0708 32 1 1.5610 1.9274 0.8308 33 1 3.0797 1.3444 0.1083 34 1 2.9863 4.9180 -0.7770 35 1 1.5610 -0.3871 2.0629 36 1 3.0797 -0.6610 1.1758 37 1 3.2602 -2.7166 -0.1357 38 1 1.5633 -2.6178 3.0907 39 1 3.1482 -2.9235 2.3404 40 1 2.1252 -4.8169 1.2105 41 1 1.6218 -4.8296 4.1146 42 1 3.2062 -5.1357 3.3635 43 1 -0.0006 -6.5281 4.2325 44 1 -0.6355 -8.8812 3.9125 45 1 0.7480 -10.3631 2.5472 46 1 3.2605 -10.4502 0.8733 47 1 4.9815 -8.5741 0.3230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569837001.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:12 Heat of formation + Delta-G solvation = 12.522814 kcal Electronic energy + Delta-G solvation = -25587.162397 eV Core-core repulsion = 21963.078458 eV Total energy + Delta-G solvation = -3624.083939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49357 -38.45802 -37.38431 -36.05832 -35.09966 -32.56864 -32.33384 -30.24187 -29.36074 -29.00947 -27.17078 -26.41947 -24.84663 -23.18022 -22.09474 -22.00610 -21.32578 -20.57986 -20.17886 -18.05540 -16.83399 -16.42990 -16.25754 -15.99509 -15.45057 -15.23141 -14.94565 -14.81665 -14.55942 -14.34146 -14.07753 -13.96528 -13.52982 -13.32701 -13.17668 -12.79278 -12.56551 -12.39576 -12.11005 -11.90697 -11.78104 -11.65904 -11.35190 -11.12823 -11.02515 -10.88083 -10.76369 -10.70418 -10.29610 -10.04610 -9.90316 -9.63509 -9.13115 -8.63232 -8.44480 -8.41027 -7.90571 -7.20635 -6.03383 -4.04300 0.89114 1.45448 2.46961 2.88356 3.31902 3.37848 3.43190 3.61273 4.06301 4.42644 4.45641 4.56783 4.63887 4.68235 4.81685 4.87487 5.00947 5.06834 5.13648 5.26427 5.27671 5.33583 5.38342 5.41038 5.49308 5.62322 5.63346 5.70513 5.78400 5.85749 6.04110 6.19519 6.31984 6.33357 6.38812 6.40737 6.49260 6.52854 6.76308 6.78421 6.95552 7.17677 7.24684 7.25832 7.31892 7.79585 7.90703 8.08692 8.19667 8.54761 9.03832 9.59933 11.07583 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026265 B = 0.002072 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.807652 B =13511.614087 C =13918.200121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.026 3.974 13 C 0.114 3.886 14 H 0.105 0.895 15 O -0.545 6.545 16 C 0.026 3.974 17 N -0.677 5.677 18 C 0.099 3.901 19 C -0.090 4.090 20 C -0.082 4.082 21 C -0.146 4.146 22 C -0.073 4.073 23 C -0.111 4.111 24 C -0.207 4.207 25 C 0.051 3.949 26 N -0.596 5.596 27 H 0.413 0.587 28 C 0.104 3.896 29 H 0.009 0.991 30 H 0.075 0.925 31 H 0.048 0.952 32 H -0.011 1.011 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.364 0.636 38 H 0.081 0.919 39 H 0.030 0.970 40 H 0.345 0.655 41 H 0.083 0.917 42 H 0.029 0.971 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.145 0.855 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.383 -26.311 9.698 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.104 4.104 13 C 0.054 3.946 14 H 0.123 0.877 15 O -0.349 6.349 16 C -0.104 4.104 17 N -0.309 5.309 18 C -0.029 4.029 19 C -0.093 4.093 20 C -0.102 4.102 21 C -0.165 4.165 22 C -0.092 4.092 23 C -0.116 4.116 24 C -0.232 4.232 25 C -0.075 4.075 26 N -0.198 5.198 27 H 0.249 0.751 28 C -0.004 4.004 29 H 0.027 0.973 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.007 0.993 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.210 0.790 38 H 0.099 0.901 39 H 0.049 0.951 40 H 0.164 0.836 41 H 0.102 0.898 42 H 0.047 0.953 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.163 0.837 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.462 -26.268 9.292 27.867 hybrid contribution 1.376 1.528 0.049 2.056 sum 1.838 -24.740 9.341 26.509 Atomic orbital electron populations 1.22267 0.88907 0.99694 1.00441 1.62033 1.06920 1.17415 1.39063 1.19741 0.95199 0.81635 0.96653 1.21170 1.34646 0.96838 1.01690 0.91779 1.25003 0.95325 0.97364 0.97060 1.69957 1.38522 1.11417 1.34154 0.86486 0.77974 0.79193 0.83719 1.20730 1.21278 1.19716 1.22705 1.00320 0.93830 0.93557 1.22015 0.98398 0.90714 0.83500 0.87707 1.86633 1.22594 1.83824 1.41828 1.22734 0.98427 0.88888 1.00322 1.60415 1.64296 1.01732 1.04471 1.20823 0.97522 0.89657 0.94922 1.18739 0.96124 0.94019 1.00390 1.20722 0.94905 0.95365 0.99176 1.20628 1.00587 0.93897 1.01367 1.20263 0.93096 0.99484 0.96380 1.19207 0.97331 0.92866 1.02171 1.21682 0.96472 0.99508 1.05517 1.21832 1.00688 0.85060 0.99905 1.41809 1.21919 1.11886 1.44217 0.75055 1.18091 0.89012 0.95256 0.97993 0.97267 0.90666 0.93347 0.99297 0.95463 0.92964 0.95278 0.91377 0.79007 0.90099 0.95132 0.83569 0.89826 0.95304 0.85664 0.86023 0.86217 0.83724 0.81332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.14 60.06 0.55 1.26 16 2 N -0.53 -11.56 4.70 -244.36 -1.15 -12.71 16 3 C 0.19 5.07 4.72 -4.97 -0.02 5.04 16 4 C -0.50 -14.38 8.46 -34.44 -0.29 -14.67 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.45 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.03 0.44 4.59 -3.83 -0.02 0.42 16 13 C 0.11 1.62 3.19 -26.73 -0.09 1.54 16 14 H 0.11 1.66 6.33 -51.93 -0.33 1.33 16 15 O -0.55 -8.19 12.62 -35.23 -0.44 -8.63 16 16 C 0.03 0.29 5.39 -3.82 -0.02 0.27 16 17 N -0.68 -7.45 6.49 -115.06 -0.75 -8.19 16 18 C 0.10 0.94 5.83 -4.98 -0.03 0.92 16 19 C -0.09 -0.92 5.41 -104.47 -0.56 -1.49 16 20 C -0.08 -0.80 9.64 -39.54 -0.38 -1.18 16 21 C -0.15 -1.33 9.97 -39.95 -0.40 -1.73 16 22 C -0.07 -0.70 10.05 -39.65 -0.40 -1.10 16 23 C -0.11 -1.18 6.37 -105.14 -0.67 -1.85 16 24 C -0.21 -1.81 11.08 -37.67 -0.42 -2.23 16 25 C 0.05 0.38 11.81 -16.73 -0.20 0.19 16 26 N -0.60 -4.96 6.07 -10.65 -0.06 -5.02 16 27 H 0.41 2.66 8.96 -40.82 -0.37 2.29 16 28 C 0.10 1.09 6.98 -83.99 -0.59 0.50 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 31 H 0.05 0.86 6.37 -51.92 -0.33 0.53 16 32 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 33 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 37 H 0.36 4.30 9.05 45.56 0.41 4.72 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.35 3.94 8.11 -39.29 -0.32 3.62 16 41 H 0.08 0.75 7.99 -51.93 -0.42 0.34 16 42 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.13 1.03 8.02 -52.49 -0.42 0.61 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 45 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 46 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 386.09 15.07 5.82 5.82 Total: -1.00 -33.29 386.09 -11.18 -44.47 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.68 Total: 6.26 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -3.63 Total: -12.66 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -1.22 Total: -52.09 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.44 Total: -8.63 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.29 -11.18 -44.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569837001.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.995 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds