Wall clock time and date at job start Tue Mar 31 2020 11:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99668 * 2 1 4 4 C 1.50699 * 109.46727 * 293.94579 * 3 2 1 5 5 H 1.07994 * 120.00404 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99547 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00372 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99838 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46841 * 90.00226 * 8 6 4 10 10 H 1.48495 * 109.47046 * 210.00269 * 8 6 4 11 11 H 1.48500 * 109.47087 * 330.00872 * 8 6 4 12 12 C 1.46899 * 110.99753 * 123.95013 * 2 1 3 13 13 C 1.52998 * 109.47362 * 66.04994 * 12 2 1 14 14 H 1.08998 * 109.46732 * 304.99985 * 13 12 2 15 15 O 1.42899 * 109.47279 * 64.99636 * 13 12 2 16 16 C 1.53003 * 109.47202 * 185.00011 * 13 12 2 17 17 N 1.46903 * 109.47090 * 179.97438 * 16 13 12 18 18 C 1.46893 * 110.99924 * 179.97438 * 17 16 13 19 19 C 1.50706 * 109.47176 * 179.97438 * 18 17 16 20 20 C 1.37787 * 120.11034 * 259.72708 * 19 18 17 21 21 C 1.38792 * 120.66254 * 179.76387 * 20 19 18 22 22 C 1.36659 * 120.52786 * 0.51286 * 21 20 19 23 23 C 1.39591 * 119.76699 * 359.74773 * 22 21 20 24 24 C 1.46491 * 134.03514 * 179.97438 * 23 22 21 25 25 C 1.34236 * 106.99791 * 180.02562 * 24 23 22 26 26 N 1.36839 * 109.93874 * 359.97438 * 25 24 23 27 27 H 0.96995 * 125.06252 * 179.97438 * 26 25 24 28 28 C 1.37695 * 109.87617 * 0.02562 * 26 25 24 29 29 H 1.08999 * 109.47704 * 296.04778 * 1 2 3 30 30 H 1.08998 * 109.47140 * 56.05291 * 1 2 3 31 31 H 1.09008 * 109.46978 * 176.04825 * 1 2 3 32 32 H 1.08995 * 109.47593 * 53.95188 * 3 2 1 33 33 H 1.09006 * 109.46603 * 173.95367 * 3 2 1 34 34 H 0.96996 * 120.00268 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.47420 * 306.04737 * 12 2 1 36 36 H 1.09005 * 109.47091 * 186.05222 * 12 2 1 37 37 H 0.96700 * 113.99588 * 59.99856 * 15 13 12 38 38 H 1.08993 * 109.47042 * 60.00113 * 16 13 12 39 39 H 1.09003 * 109.46902 * 299.99343 * 16 13 12 40 40 H 1.00904 * 110.99923 * 56.04649 * 17 16 13 41 41 H 1.09001 * 109.46739 * 60.00281 * 18 17 16 42 42 H 1.09000 * 109.47767 * 300.00540 * 18 17 16 43 43 H 1.07994 * 119.66925 * 0.02562 * 20 19 18 44 44 H 1.08000 * 119.73712 * 180.23830 * 21 20 19 45 45 H 1.08007 * 120.11864 * 179.76745 * 22 21 20 46 46 H 1.07993 * 126.49986 * 0.02562 * 24 23 22 47 47 H 1.07998 * 125.03007 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0470 -1.2985 5 1 1.0741 1.5113 -2.0486 6 6 2.0267 3.3494 -1.5286 7 7 2.7117 4.0019 -0.6150 8 14 1.5819 4.1871 -3.1379 9 1 0.2693 4.8671 -2.9957 10 1 2.6238 5.1885 -3.4792 11 1 1.4986 3.1714 -4.2181 12 6 1.9954 -0.7659 1.1376 13 6 1.6315 -2.2425 0.9705 14 1 0.5532 -2.3388 0.8434 15 8 2.2956 -2.7696 -0.1798 16 6 2.0699 -3.0197 2.2134 17 7 1.7200 -4.4374 2.0531 18 6 2.1274 -5.2165 3.2299 19 6 1.7524 -6.6624 3.0296 20 6 0.6178 -7.1708 3.6236 21 6 0.2590 -8.4993 3.4430 22 6 1.0315 -9.3295 2.6803 23 6 2.1880 -8.8367 2.0736 24 6 3.2187 -9.4270 1.2161 25 6 4.1012 -8.4548 0.9372 26 7 3.7199 -7.2898 1.5455 27 1 4.2004 -6.4491 1.4900 28 6 2.5532 -7.4892 2.2490 29 1 -0.3634 0.4512 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3633 -1.0253 -0.0708 32 1 1.5610 1.9274 0.8308 33 1 3.0797 1.3444 0.1083 34 1 2.9863 4.9180 -0.7770 35 1 1.5610 -0.3871 2.0629 36 1 3.0797 -0.6610 1.1758 37 1 3.2602 -2.7166 -0.1357 38 1 1.5633 -2.6178 3.0907 39 1 3.1482 -2.9235 2.3404 40 1 2.1252 -4.8169 1.2105 41 1 1.6218 -4.8296 4.1146 42 1 3.2062 -5.1357 3.3635 43 1 -0.0006 -6.5281 4.2325 44 1 -0.6355 -8.8812 3.9125 45 1 0.7480 -10.3631 2.5472 46 1 3.2605 -10.4502 0.8733 47 1 4.9815 -8.5741 0.3230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569837001.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:11 Heat of formation + Delta-G solvation = -12.606126 kcal Electronic energy + Delta-G solvation = -25588.252070 eV Core-core repulsion = 21963.078458 eV Total energy + Delta-G solvation = -3625.173612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.13231 -39.67642 -38.16508 -37.39574 -36.16423 -34.63892 -33.15616 -31.23432 -30.33918 -29.70382 -29.01826 -27.69879 -26.18931 -24.54008 -22.77647 -22.75612 -22.57424 -21.81416 -21.21668 -18.71307 -18.58869 -17.69727 -17.26328 -16.93382 -16.71620 -16.44276 -16.01549 -15.98319 -15.71897 -15.38290 -15.25469 -14.98854 -14.80956 -14.46030 -13.96643 -13.95714 -13.78317 -13.43797 -13.26706 -13.21727 -12.95998 -12.74470 -12.60959 -12.55160 -12.45202 -12.39457 -12.34968 -12.02180 -11.72714 -11.64980 -11.42178 -10.79287 -10.63484 -10.54594 -9.44554 -9.09505 -8.98117 -8.55975 -8.22247 -6.32017 0.20872 0.75334 1.40081 1.41211 1.53317 1.84904 2.29967 2.39053 2.81938 3.09374 3.11966 3.48545 3.65136 3.76182 3.94281 3.99573 4.04160 4.11924 4.23759 4.23965 4.34190 4.43094 4.44534 4.53691 4.60587 4.66017 4.71675 4.71747 4.78256 4.83317 5.00377 5.04445 5.13170 5.15433 5.16166 5.19829 5.30402 5.63373 5.65415 5.71814 5.84593 5.86803 5.94537 6.03949 6.29236 6.30032 6.32158 6.61923 6.69155 6.83807 6.92057 7.37655 8.88640 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026265 B = 0.002072 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.807652 B =13511.614087 C =13918.200121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.208 3.792 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.267 1.267 12 C 0.025 3.975 13 C 0.128 3.872 14 H 0.092 0.908 15 O -0.561 6.561 16 C 0.038 3.962 17 N -0.684 5.684 18 C 0.105 3.895 19 C -0.102 4.102 20 C -0.095 4.095 21 C -0.152 4.152 22 C -0.086 4.086 23 C -0.138 4.138 24 C -0.229 4.229 25 C 0.057 3.943 26 N -0.593 5.593 27 H 0.421 0.579 28 C 0.084 3.916 29 H 0.012 0.988 30 H 0.055 0.945 31 H 0.074 0.926 32 H -0.039 1.039 33 H 0.005 0.995 34 H 0.265 0.735 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.378 0.622 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.343 0.657 41 H 0.089 0.911 42 H 0.038 0.962 43 H 0.136 0.864 44 H 0.141 0.859 45 H 0.135 0.865 46 H 0.160 0.840 47 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.496 -27.306 9.261 28.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.265 5.265 3 C 0.082 3.918 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.191 1.191 12 C -0.104 4.104 13 C 0.068 3.932 14 H 0.110 0.890 15 O -0.366 6.366 16 C -0.092 4.092 17 N -0.316 5.316 18 C -0.023 4.023 19 C -0.105 4.105 20 C -0.115 4.115 21 C -0.171 4.171 22 C -0.105 4.105 23 C -0.143 4.143 24 C -0.254 4.254 25 C -0.069 4.069 26 N -0.197 5.197 27 H 0.259 0.741 28 C -0.024 4.024 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.093 0.907 32 H -0.021 1.021 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.226 0.774 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.161 0.839 41 H 0.107 0.893 42 H 0.056 0.944 43 H 0.154 0.846 44 H 0.159 0.841 45 H 0.153 0.847 46 H 0.177 0.823 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.580 -27.282 8.867 28.692 hybrid contribution 1.364 1.762 0.216 2.239 sum 1.944 -25.520 9.083 27.158 Atomic orbital electron populations 1.22232 0.87914 1.01019 0.99702 1.61944 1.07933 1.14942 1.41687 1.19392 0.93653 0.83883 0.94901 1.21462 1.34803 0.97492 1.02416 0.92180 1.25914 0.95026 0.98040 1.00741 1.70073 1.39345 1.11876 1.36167 0.85384 0.78012 0.78074 0.79167 1.19782 1.20567 1.19092 1.22819 1.00285 0.95173 0.92094 1.21792 0.97680 0.88911 0.84801 0.89005 1.86592 1.23989 1.83685 1.42364 1.22540 0.99323 0.88742 0.98582 1.60385 1.64666 1.01566 1.04949 1.20794 0.98073 0.89098 0.94329 1.18892 0.96491 0.94370 1.00777 1.20987 0.95093 0.95958 0.99466 1.20909 1.01199 0.93779 1.01219 1.20558 0.93081 1.00444 0.96414 1.19656 0.98205 0.93503 1.02914 1.21995 0.96617 1.00717 1.06049 1.22415 1.01121 0.84270 0.99062 1.41891 1.21396 1.12583 1.43807 0.74139 1.18297 0.89920 0.95494 0.98677 0.96947 0.92642 0.90699 1.02111 0.97708 0.92656 0.94791 0.91216 0.77394 0.89518 0.93640 0.83869 0.89302 0.94425 0.84581 0.84101 0.84714 0.82272 0.77997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.14 127.69 1.17 2.75 16 2 N -0.54 -23.64 4.70 -927.03 -4.36 -27.99 16 3 C 0.21 11.20 4.72 85.56 0.40 11.60 16 4 C -0.52 -30.20 8.46 25.60 0.22 -29.98 16 5 H 0.06 3.44 7.12 -2.91 -0.02 3.42 16 6 C 0.00 0.04 5.46 84.65 0.46 0.50 16 7 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 8 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 C 0.03 0.86 4.59 86.30 0.40 1.26 16 13 C 0.13 3.48 3.19 30.59 0.10 3.58 16 14 H 0.09 2.76 6.33 -2.39 -0.02 2.75 16 15 O -0.56 -16.01 12.62 -148.98 -1.88 -17.89 16 16 C 0.04 0.78 5.39 86.30 0.47 1.24 16 17 N -0.68 -13.90 6.49 -517.93 -3.36 -17.27 16 18 C 0.11 1.84 5.83 85.56 0.50 2.34 16 19 C -0.10 -2.02 5.41 -19.77 -0.11 -2.13 16 20 C -0.10 -1.78 9.64 22.30 0.21 -1.57 16 21 C -0.15 -2.66 9.97 22.03 0.22 -2.44 16 22 C -0.09 -1.61 10.05 22.23 0.22 -1.38 16 23 C -0.14 -2.87 6.37 -20.20 -0.13 -2.99 16 24 C -0.23 -3.77 11.08 23.51 0.26 -3.51 16 25 C 0.06 0.76 11.81 83.00 0.98 1.74 16 26 N -0.59 -9.08 6.07 -187.60 -1.14 -10.21 16 27 H 0.42 4.75 8.96 -92.71 -0.83 3.92 16 28 C 0.08 1.70 6.98 39.03 0.27 1.97 16 29 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 2.41 6.76 -2.39 -0.02 2.39 16 31 H 0.07 2.58 6.37 -2.38 -0.02 2.56 16 32 H -0.04 -2.26 8.12 -2.39 -0.02 -2.28 16 33 H 0.00 0.28 7.93 -2.38 -0.02 0.26 16 34 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 35 H 0.03 1.12 8.12 -2.38 -0.02 1.10 16 36 H 0.07 2.31 7.93 -2.38 -0.02 2.29 16 37 H 0.38 8.33 9.05 -74.06 -0.67 7.66 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.34 7.31 8.11 -89.69 -0.73 6.58 16 41 H 0.09 1.45 7.99 -2.39 -0.02 1.43 16 42 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.14 2.10 8.02 -2.91 -0.02 2.08 16 44 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 45 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 46 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 47 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -71.75 386.09 -4.02 -75.77 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -1.24 Total: 23.96 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 5.64 Total: -17.04 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -8.57 Total: -111.60 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.88 Total: -17.89 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -71.75 -4.02 -75.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569837001.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.163 kcal (2) G-P(sol) polarization free energy of solvation -71.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds