Wall clock time and date at job start Tue Mar 31 2020 11:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99892 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00241 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47135 * 90.00125 * 8 6 4 10 10 H 1.48503 * 109.47215 * 210.00315 * 8 6 4 11 11 H 1.48508 * 109.46958 * 330.00276 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.50693 * 109.47360 * 180.02562 * 18 17 16 20 20 C 1.37794 * 120.11243 * 259.72240 * 19 18 17 21 21 C 1.38789 * 120.67077 * 179.76499 * 20 19 18 22 22 C 1.36665 * 120.52451 * 0.51576 * 21 20 19 23 23 C 1.39590 * 119.76185 * 359.74733 * 22 21 20 24 24 C 1.46496 * 134.02898 * 180.02562 * 23 22 21 25 25 C 1.34240 * 106.99637 * 179.97438 * 24 23 22 26 26 N 1.36837 * 109.93951 * 359.97438 * 25 24 23 27 27 H 0.96993 * 125.05954 * 179.97438 * 26 25 24 28 28 C 1.37695 * 109.87452 * 0.02562 * 26 25 24 29 29 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 30 30 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 32 32 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 33 33 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 34 34 H 0.97002 * 119.99998 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 36 36 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 37 37 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 38 38 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 39 39 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 40 40 H 1.00896 * 111.00687 * 303.95477 * 17 16 13 41 41 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 42 42 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 43 43 H 1.08004 * 119.66460 * 0.02891 * 20 19 18 44 44 H 1.07998 * 119.74035 * 180.23619 * 21 20 19 45 45 H 1.08001 * 120.11965 * 179.76607 * 22 21 20 46 46 H 1.07993 * 126.50319 * 0.02562 * 24 23 22 47 47 H 1.07999 * 125.03054 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9390 2.6618 8 14 2.9998 4.2763 0.2309 9 1 2.0631 4.9799 -0.6817 10 1 3.8862 5.2680 0.8913 11 1 3.8238 3.3176 -0.5485 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7564 -6.6545 -3.0458 20 6 2.5953 -7.6242 -2.5411 21 6 2.1619 -8.9359 -2.4077 22 6 0.8972 -9.2907 -2.7850 23 6 0.0324 -8.3256 -3.3038 24 6 -1.3482 -8.3531 -3.7930 25 6 -1.6549 -7.1026 -4.1728 26 7 -0.5839 -6.2763 -3.9664 27 1 -0.5660 -5.3271 -4.1651 28 6 0.4651 -6.9933 -3.4358 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.0797 1.3445 -0.1083 33 1 1.5610 1.9274 -0.8309 34 1 1.9882 4.8554 2.8235 35 1 1.5611 -0.3871 -2.0628 36 1 3.0797 -0.6610 -1.1757 37 1 3.1653 -2.6770 0.2786 38 1 1.8160 -2.6058 -3.0857 39 1 3.2698 -3.0086 -2.1409 40 1 2.0000 -4.8410 -1.1732 41 1 1.8742 -4.8135 -4.1181 42 1 3.3283 -5.2165 -3.1739 43 1 3.5990 -7.3599 -2.2423 44 1 2.8307 -9.6830 -2.0067 45 1 0.5679 -10.3142 -2.6818 46 1 -1.9966 -9.2155 -3.8385 47 1 -2.6064 -6.7942 -4.5801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569837002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:16 Heat of formation + Delta-G solvation = 16.417292 kcal Electronic energy + Delta-G solvation = -25602.107658 eV Core-core repulsion = 21978.192596 eV Total energy + Delta-G solvation = -3623.915062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.44176 -38.52365 -37.42223 -36.12503 -35.12566 -32.52507 -32.34022 -30.28365 -29.45738 -28.99398 -27.73381 -26.47334 -24.86444 -23.07702 -22.12392 -21.96945 -21.23524 -20.46272 -20.12560 -18.16234 -16.99963 -16.57221 -16.20803 -16.09270 -15.54766 -15.33603 -14.92680 -14.86023 -14.41418 -14.30177 -14.14659 -14.01125 -13.64903 -13.28086 -13.07688 -12.88700 -12.67503 -12.52902 -12.31657 -12.04936 -11.80023 -11.67949 -11.60403 -11.28645 -11.04002 -11.01467 -10.76020 -10.70535 -10.28879 -9.94910 -9.87468 -9.59882 -9.24659 -8.68079 -8.58924 -8.39866 -7.89242 -7.36218 -6.05632 -4.02836 0.87304 1.47106 2.49928 2.98629 3.25603 3.33369 3.34424 3.60666 4.01942 4.40134 4.45982 4.52480 4.57316 4.68532 4.81690 4.87365 4.99542 5.05223 5.12023 5.15769 5.24730 5.27510 5.33339 5.39527 5.43273 5.53766 5.61007 5.63052 5.79629 5.83815 5.90422 6.09090 6.21283 6.28550 6.29533 6.38835 6.50828 6.55222 6.68587 6.73201 6.81712 6.97345 6.97928 7.17832 7.33692 7.57549 7.87777 7.89594 8.06772 8.65560 9.04242 9.55749 11.07579 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026719 B = 0.002125 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.703823 B =13170.894633 C =13504.558616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.519 5.519 3 C 0.162 3.838 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.022 3.978 13 C 0.115 3.885 14 H 0.104 0.896 15 O -0.544 6.544 16 C 0.027 3.973 17 N -0.681 5.681 18 C 0.100 3.900 19 C -0.093 4.093 20 C -0.095 4.095 21 C -0.147 4.147 22 C -0.072 4.072 23 C -0.115 4.115 24 C -0.210 4.210 25 C 0.052 3.948 26 N -0.587 5.587 27 H 0.417 0.583 28 C 0.121 3.879 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.026 0.974 33 H -0.018 1.018 34 H 0.263 0.737 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.367 0.633 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.353 0.647 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.144 0.856 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 -25.274 -16.843 30.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.243 5.243 3 C 0.036 3.964 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.539 5.539 8 Si 0.704 3.296 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.194 1.194 12 C -0.108 4.108 13 C 0.055 3.945 14 H 0.121 0.879 15 O -0.347 6.347 16 C -0.103 4.103 17 N -0.314 5.314 18 C -0.029 4.029 19 C -0.096 4.096 20 C -0.115 4.115 21 C -0.167 4.167 22 C -0.090 4.090 23 C -0.119 4.119 24 C -0.235 4.235 25 C -0.075 4.075 26 N -0.189 5.189 27 H 0.255 0.745 28 C 0.013 3.987 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.044 0.956 33 H -0.001 1.001 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.214 0.786 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.172 0.828 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.162 0.838 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.207 -25.160 -16.502 30.169 hybrid contribution 1.717 1.604 -1.482 2.778 sum -0.490 -23.555 -17.984 29.639 Atomic orbital electron populations 1.22279 0.88249 0.99669 1.01027 1.61866 1.07392 1.15958 1.39056 1.20213 0.95036 0.84143 0.97034 1.21037 1.35467 0.97143 1.00913 0.90036 1.24913 0.95827 0.97378 0.95335 1.69895 1.46931 1.13208 1.23857 0.86857 0.80611 0.80025 0.82156 1.20411 1.21115 1.19351 1.22759 1.00351 0.94293 0.93408 1.21956 0.99087 0.90594 0.82902 0.87869 1.86629 1.24880 1.84802 1.38408 1.22712 0.97767 0.89466 1.00368 1.60460 1.63459 1.01666 1.05788 1.20781 0.97281 0.89725 0.95121 1.18746 0.91510 0.95253 1.04066 1.20738 0.98984 0.92654 0.99168 1.20576 0.96351 0.96252 1.03473 1.20260 0.92956 0.98227 0.97599 1.19240 0.95035 0.92782 1.04890 1.21661 0.95132 0.97173 1.09551 1.21843 0.92255 0.90481 1.02944 1.41814 1.10702 1.11033 1.55342 0.74549 1.17940 0.89577 0.91132 1.00062 0.97220 0.93105 0.90233 0.95602 1.00072 0.92670 0.95293 0.91312 0.78638 0.90538 0.94829 0.82779 0.91106 0.94118 0.86029 0.86106 0.86248 0.83815 0.81419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.16 60.06 0.55 1.26 16 2 N -0.52 -10.87 4.62 -244.36 -1.13 -12.00 16 3 C 0.16 3.95 3.79 -4.97 -0.02 3.93 16 4 C -0.51 -14.57 9.07 -34.44 -0.31 -14.88 16 5 H 0.08 2.56 7.35 -52.48 -0.39 2.18 16 6 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 7 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 8 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 12 C 0.02 0.35 4.62 -3.82 -0.02 0.33 16 13 C 0.11 1.55 3.08 -26.73 -0.08 1.46 16 14 H 0.10 1.53 6.47 -51.93 -0.34 1.19 16 15 O -0.54 -8.02 12.72 -35.23 -0.45 -8.47 16 16 C 0.03 0.28 5.36 -3.83 -0.02 0.26 16 17 N -0.68 -6.94 6.49 -115.06 -0.75 -7.68 16 18 C 0.10 0.89 5.83 -4.98 -0.03 0.86 16 19 C -0.09 -0.92 5.41 -104.47 -0.56 -1.49 16 20 C -0.10 -0.87 9.64 -39.54 -0.38 -1.26 16 21 C -0.15 -1.30 9.97 -39.95 -0.40 -1.70 16 22 C -0.07 -0.68 10.05 -39.65 -0.40 -1.08 16 23 C -0.11 -1.22 6.37 -105.14 -0.67 -1.89 16 24 C -0.21 -1.87 11.08 -37.67 -0.42 -2.29 16 25 C 0.05 0.40 11.81 -16.73 -0.20 0.20 16 26 N -0.59 -5.16 6.07 -10.65 -0.06 -5.22 16 27 H 0.42 3.04 8.96 -40.82 -0.37 2.67 16 28 C 0.12 1.28 6.98 -83.99 -0.59 0.70 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.05 0.88 6.30 -51.93 -0.33 0.55 16 31 H 0.08 1.75 6.86 -51.93 -0.36 1.39 16 32 H 0.03 0.63 6.99 -51.93 -0.36 0.27 16 33 H -0.02 -0.45 7.55 -51.93 -0.39 -0.84 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.03 0.45 8.12 -51.93 -0.42 0.02 16 36 H 0.07 1.06 7.93 -51.93 -0.41 0.65 16 37 H 0.37 4.35 9.04 45.56 0.41 4.77 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.35 3.89 8.28 -39.29 -0.33 3.57 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.04 0.34 8.00 -51.93 -0.42 -0.08 16 43 H 0.12 0.90 8.03 -52.48 -0.42 0.48 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 382.77 15.07 5.77 5.77 Total: -1.00 -33.50 382.77 -10.82 -44.32 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.66 Total: 7.11 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -3.64 Total: -13.73 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -1.17 Total: -51.86 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.45 Total: -8.47 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.50 -10.82 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569837002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.736 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds