Wall clock time and date at job start Tue Mar 31 2020 11:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99892 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00241 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47135 * 90.00125 * 8 6 4 10 10 H 1.48503 * 109.47215 * 210.00315 * 8 6 4 11 11 H 1.48508 * 109.46958 * 330.00276 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.50693 * 109.47360 * 180.02562 * 18 17 16 20 20 C 1.37794 * 120.11243 * 259.72240 * 19 18 17 21 21 C 1.38789 * 120.67077 * 179.76499 * 20 19 18 22 22 C 1.36665 * 120.52451 * 0.51576 * 21 20 19 23 23 C 1.39590 * 119.76185 * 359.74733 * 22 21 20 24 24 C 1.46496 * 134.02898 * 180.02562 * 23 22 21 25 25 C 1.34240 * 106.99637 * 179.97438 * 24 23 22 26 26 N 1.36837 * 109.93951 * 359.97438 * 25 24 23 27 27 H 0.96993 * 125.05954 * 179.97438 * 26 25 24 28 28 C 1.37695 * 109.87452 * 0.02562 * 26 25 24 29 29 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 30 30 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 32 32 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 33 33 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 34 34 H 0.97002 * 119.99998 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 36 36 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 37 37 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 38 38 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 39 39 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 40 40 H 1.00896 * 111.00687 * 303.95477 * 17 16 13 41 41 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 42 42 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 43 43 H 1.08004 * 119.66460 * 0.02891 * 20 19 18 44 44 H 1.07998 * 119.74035 * 180.23619 * 21 20 19 45 45 H 1.08001 * 120.11965 * 179.76607 * 22 21 20 46 46 H 1.07993 * 126.50319 * 0.02562 * 24 23 22 47 47 H 1.07999 * 125.03054 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9390 2.6618 8 14 2.9998 4.2763 0.2309 9 1 2.0631 4.9799 -0.6817 10 1 3.8862 5.2680 0.8913 11 1 3.8238 3.3176 -0.5485 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7564 -6.6545 -3.0458 20 6 2.5953 -7.6242 -2.5411 21 6 2.1619 -8.9359 -2.4077 22 6 0.8972 -9.2907 -2.7850 23 6 0.0324 -8.3256 -3.3038 24 6 -1.3482 -8.3531 -3.7930 25 6 -1.6549 -7.1026 -4.1728 26 7 -0.5839 -6.2763 -3.9664 27 1 -0.5660 -5.3271 -4.1651 28 6 0.4651 -6.9933 -3.4358 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.0797 1.3445 -0.1083 33 1 1.5610 1.9274 -0.8309 34 1 1.9882 4.8554 2.8235 35 1 1.5611 -0.3871 -2.0628 36 1 3.0797 -0.6610 -1.1757 37 1 3.1653 -2.6770 0.2786 38 1 1.8160 -2.6058 -3.0857 39 1 3.2698 -3.0086 -2.1409 40 1 2.0000 -4.8410 -1.1732 41 1 1.8742 -4.8135 -4.1181 42 1 3.3283 -5.2165 -3.1739 43 1 3.5990 -7.3599 -2.2423 44 1 2.8307 -9.6830 -2.0067 45 1 0.5679 -10.3142 -2.6818 46 1 -1.9966 -9.2155 -3.8385 47 1 -2.6064 -6.7942 -4.5801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569837002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:15 Heat of formation + Delta-G solvation = -9.821140 kcal Electronic energy + Delta-G solvation = -25603.245442 eV Core-core repulsion = 21978.192596 eV Total energy + Delta-G solvation = -3625.052846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.07738 -39.67287 -38.19119 -37.38087 -36.11215 -34.60826 -33.14672 -31.34064 -30.41958 -29.72827 -29.35928 -27.66812 -26.09587 -24.33898 -22.78721 -22.62805 -22.49457 -21.74947 -21.09947 -19.04066 -18.82646 -17.53126 -17.23379 -16.91712 -16.65770 -16.19923 -16.17512 -16.02134 -15.82473 -15.41808 -15.15405 -15.00138 -14.58884 -14.53516 -14.22383 -13.93352 -13.82748 -13.51809 -13.39134 -13.26627 -13.05570 -12.72948 -12.58672 -12.50314 -12.44180 -12.31459 -12.28945 -11.82932 -11.71236 -11.59915 -11.50908 -10.80520 -10.78765 -10.50690 -9.42537 -9.07248 -8.98401 -8.54071 -8.28705 -6.32566 0.20756 0.78336 1.33183 1.35471 1.46255 1.87531 2.33481 2.38999 2.82943 3.03486 3.09723 3.45767 3.69894 3.78978 3.92302 4.00876 4.12354 4.12593 4.24874 4.29532 4.38035 4.40870 4.46254 4.54302 4.62245 4.63724 4.65900 4.71475 4.78271 4.84880 4.88230 5.00103 5.01460 5.10228 5.17507 5.19926 5.24936 5.52353 5.62287 5.72102 5.87077 5.89837 5.95929 6.01215 6.32059 6.34227 6.36541 6.65785 6.74211 6.76143 6.97010 7.30899 8.88214 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026719 B = 0.002125 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.703823 B =13170.894633 C =13504.558616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.540 5.540 3 C 0.172 3.828 4 C -0.517 4.517 5 H 0.034 0.966 6 C 0.003 3.997 7 N -0.949 5.949 8 Si 0.952 3.048 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.246 1.246 12 C 0.022 3.978 13 C 0.125 3.875 14 H 0.090 0.910 15 O -0.564 6.564 16 C 0.040 3.960 17 N -0.686 5.686 18 C 0.107 3.893 19 C -0.104 4.104 20 C -0.105 4.105 21 C -0.154 4.154 22 C -0.086 4.086 23 C -0.142 4.142 24 C -0.232 4.232 25 C 0.056 3.944 26 N -0.587 5.587 27 H 0.423 0.577 28 C 0.098 3.902 29 H 0.020 0.980 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.031 0.969 33 H -0.014 1.014 34 H 0.267 0.733 35 H 0.043 0.957 36 H 0.078 0.922 37 H 0.380 0.620 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.347 0.653 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.133 0.867 46 H 0.158 0.842 47 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 -25.853 -19.490 32.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.264 5.264 3 C 0.045 3.955 4 C -0.555 4.555 5 H 0.052 0.948 6 C -0.193 4.193 7 N -0.590 5.590 8 Si 0.775 3.225 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.170 1.170 12 C -0.107 4.107 13 C 0.065 3.935 14 H 0.107 0.893 15 O -0.370 6.370 16 C -0.090 4.090 17 N -0.318 5.318 18 C -0.022 4.022 19 C -0.107 4.107 20 C -0.124 4.124 21 C -0.173 4.173 22 C -0.105 4.105 23 C -0.147 4.147 24 C -0.257 4.257 25 C -0.071 4.071 26 N -0.190 5.190 27 H 0.261 0.739 28 C -0.010 4.010 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.003 0.997 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.228 0.772 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.166 0.834 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.155 0.845 44 H 0.158 0.842 45 H 0.151 0.849 46 H 0.176 0.824 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.173 -25.766 -19.171 32.137 hybrid contribution 1.321 1.679 -0.581 2.214 sum 0.148 -24.087 -19.752 31.150 Atomic orbital electron populations 1.22175 0.87920 1.00758 0.99717 1.61732 1.07937 1.14408 1.42280 1.19965 0.95272 0.85864 0.94401 1.21279 1.34808 0.97510 1.01941 0.94817 1.25921 0.97083 0.98470 0.97873 1.70064 1.48658 1.13855 1.26446 0.85653 0.79153 0.78664 0.79043 1.19337 1.20696 1.16985 1.22875 1.00782 0.95004 0.92013 1.21817 0.98429 0.89422 0.83825 0.89261 1.86597 1.26152 1.84848 1.39363 1.22529 0.98348 0.89117 0.99036 1.60429 1.63853 1.01659 1.05899 1.20742 0.97742 0.89020 0.94674 1.18931 0.91561 0.95898 1.04334 1.21019 0.99700 0.92773 0.98941 1.20875 0.96517 0.96768 1.03103 1.20547 0.93285 0.98924 0.97712 1.19677 0.96157 0.93345 1.05541 1.21976 0.94929 0.98407 1.10384 1.22411 0.92971 0.90015 1.01693 1.41904 1.10607 1.11404 1.55059 0.73886 1.18212 0.90316 0.91593 1.00885 0.96144 0.90802 0.93848 0.95057 0.99654 0.92438 0.93864 0.90354 0.77238 0.89420 0.93524 0.83407 0.90595 0.93145 0.84484 0.84187 0.84884 0.82411 0.78168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.67 9.16 127.69 1.17 2.84 16 2 N -0.54 -22.13 4.62 -927.03 -4.28 -26.41 16 3 C 0.17 8.21 3.79 85.56 0.32 8.53 16 4 C -0.52 -30.38 9.07 25.60 0.23 -30.15 16 5 H 0.03 2.24 7.35 -2.91 -0.02 2.22 16 6 C 0.00 0.21 5.47 84.65 0.46 0.67 16 7 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 8 Si 0.95 43.87 27.47 68.60 1.88 45.75 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.25 -10.39 6.54 99.48 0.65 -9.74 16 12 C 0.02 0.65 4.62 86.30 0.40 1.05 16 13 C 0.12 3.10 3.08 30.59 0.09 3.20 16 14 H 0.09 2.48 6.47 -2.39 -0.02 2.46 16 15 O -0.56 -15.84 12.72 -148.98 -1.90 -17.73 16 16 C 0.04 0.71 5.36 86.30 0.46 1.17 16 17 N -0.69 -12.56 6.49 -517.95 -3.36 -15.92 16 18 C 0.11 1.69 5.83 85.55 0.50 2.18 16 19 C -0.10 -1.95 5.41 -19.77 -0.11 -2.06 16 20 C -0.10 -1.79 9.64 22.30 0.21 -1.58 16 21 C -0.15 -2.57 9.97 22.03 0.22 -2.35 16 22 C -0.09 -1.59 10.05 22.23 0.22 -1.37 16 23 C -0.14 -2.98 6.37 -20.20 -0.13 -3.11 16 24 C -0.23 -3.95 11.08 23.51 0.26 -3.69 16 25 C 0.06 0.78 11.81 83.00 0.98 1.76 16 26 N -0.59 -9.59 6.07 -187.60 -1.14 -10.73 16 27 H 0.42 5.52 8.96 -92.71 -0.83 4.69 16 28 C 0.10 2.01 6.98 39.03 0.27 2.28 16 29 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 2.51 6.30 -2.39 -0.02 2.49 16 31 H 0.04 1.98 6.86 -2.39 -0.02 1.96 16 32 H 0.03 1.46 6.99 -2.38 -0.02 1.45 16 33 H -0.01 -0.66 7.55 -2.39 -0.02 -0.68 16 34 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.04 1.18 8.12 -2.39 -0.02 1.16 16 36 H 0.08 2.17 7.93 -2.39 -0.02 2.15 16 37 H 0.38 8.34 9.04 -74.06 -0.67 7.67 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.35 7.10 8.28 -89.70 -0.74 6.36 16 41 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.05 0.70 8.00 -2.39 -0.02 0.68 16 43 H 0.14 1.79 8.03 -2.91 -0.02 1.77 16 44 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 45 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 46 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 47 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -74.19 382.77 -4.22 -78.41 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -1.30 Total: 27.03 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 5.58 Total: -20.61 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -8.48 Total: -112.85 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -1.90 Total: -17.73 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -74.19 -4.22 -78.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569837002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.588 kcal (2) G-P(sol) polarization free energy of solvation -74.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds