Wall clock time and date at job start Tue Mar 31 2020 11:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34264 * 125.75351 * 2 1 4 4 C 1.38043 * 107.41512 * 180.14846 * 3 2 1 5 5 C 1.47433 * 126.41045 * 179.87251 * 4 3 2 6 6 O 1.21602 * 119.99579 * 220.70222 * 5 4 3 7 7 N 1.34775 * 119.99969 * 40.43286 * 5 4 3 8 8 C 1.46927 * 120.62901 * 5.34452 * 7 5 4 9 9 C 1.53622 * 108.53974 * 126.37319 * 8 7 5 10 10 C 1.53049 * 109.24629 * 54.85498 * 9 8 7 11 11 C 1.52998 * 109.45242 * 178.49541 * 10 9 8 12 12 C 1.50697 * 109.47016 * 295.06432 * 11 10 9 13 13 H 1.07996 * 120.00463 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99361 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99513 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00418 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47203 * 89.99838 * 16 14 12 18 18 H 1.48501 * 109.47247 * 210.00045 * 16 14 12 19 19 H 1.48499 * 109.47136 * 330.00175 * 16 14 12 20 20 C 1.53035 * 109.53594 * 298.51412 * 10 9 8 21 21 C 1.46926 * 120.63169 * 185.63223 * 7 5 4 22 22 C 1.41287 * 107.17167 * 359.61302 * 4 3 2 23 23 C 1.50702 * 125.98837 * 180.27580 * 22 4 3 24 24 C 1.53000 * 117.49959 * 188.74565 * 23 22 4 25 25 C 1.52997 * 117.49688 * 120.08332 * 23 22 4 26 26 N 1.30451 * 108.02320 * 0.23793 * 22 4 3 27 27 H 1.08996 * 109.46778 * 270.30997 * 1 2 3 28 28 H 1.08999 * 109.47401 * 30.30990 * 1 2 3 29 29 H 1.09000 * 109.46546 * 150.31340 * 1 2 3 30 30 H 1.08005 * 126.29057 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.58782 * 246.20390 * 8 7 5 32 32 H 1.08999 * 109.59174 * 6.63703 * 8 7 5 33 33 H 1.08998 * 109.63683 * 294.86362 * 9 8 7 34 34 H 1.09005 * 109.43528 * 174.72482 * 9 8 7 35 35 H 1.09004 * 109.45168 * 58.53122 * 10 9 8 36 36 H 1.09001 * 109.47163 * 55.06541 * 11 10 9 37 37 H 1.08994 * 109.46643 * 175.06303 * 11 10 9 38 38 H 0.97005 * 120.00146 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.49628 * 301.41006 * 20 10 9 40 40 H 1.09001 * 109.49852 * 181.30820 * 20 10 9 41 41 H 1.09004 * 109.58035 * 353.36961 * 21 7 5 42 42 H 1.08993 * 109.58736 * 113.64775 * 21 7 5 43 43 H 1.09000 * 115.54894 * 334.41933 * 23 22 4 44 44 H 1.08998 * 117.49670 * 359.97438 * 24 23 22 45 45 H 1.08998 * 117.49762 * 145.02220 * 24 23 22 46 46 H 1.09005 * 117.50058 * 214.97475 * 25 23 22 47 47 H 1.08997 * 117.50463 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2496 1.0896 0.0000 4 6 3.5599 0.6553 -0.0034 5 6 4.7639 1.5062 -0.0073 6 8 5.7192 1.2047 -0.6966 7 7 4.8035 2.6211 0.7489 8 6 3.7043 2.9403 1.6701 9 6 4.2917 3.1685 3.0711 10 6 5.3785 4.2433 2.9936 11 6 5.9409 4.5011 4.3929 12 6 4.8620 5.0852 5.2681 13 1 3.8742 5.2558 4.8663 14 6 5.1365 5.4026 6.5815 15 7 4.1951 5.9128 7.3451 16 14 6.8452 5.1081 7.2761 17 1 7.6793 6.3191 7.0690 18 1 6.7456 4.8182 8.7292 19 1 7.4692 3.9528 6.5825 20 6 6.5036 3.7679 2.0715 21 6 5.9438 3.5437 0.6632 22 6 3.5311 -0.7573 0.0036 23 6 4.7323 -1.6674 0.0089 24 6 4.4853 -3.1642 -0.1901 25 6 4.8837 -2.6304 1.1881 26 7 2.2827 -1.1356 0.0056 27 1 -0.3633 0.0056 1.0276 28 1 -0.3634 0.8872 -0.5186 29 1 -0.3632 -0.8928 -0.5090 30 1 1.9166 2.1170 0.0004 31 1 3.1954 3.8433 1.3328 32 1 2.9988 2.1099 1.6990 33 1 4.7245 2.2396 3.4425 34 1 3.5019 3.4978 3.7463 35 1 4.9503 5.1647 2.5988 36 1 6.2891 3.5621 4.8232 37 1 6.7735 5.2012 4.3264 38 1 4.3882 6.1365 8.2690 39 1 6.9156 2.8333 2.4523 40 1 7.2880 4.5238 2.0350 41 1 6.7165 3.1113 0.0274 42 1 5.6143 4.4938 0.2431 43 1 5.6429 -1.2465 -0.4173 44 1 3.4541 -3.4906 -0.3244 45 1 5.2337 -3.7281 -0.7470 46 1 5.8941 -2.8434 1.5374 47 1 4.1149 -2.6054 1.9604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569931361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:09 Heat of formation + Delta-G solvation = 59.453632 kcal Electronic energy + Delta-G solvation = -26963.827406 eV Core-core repulsion = 23341.778540 eV Total energy + Delta-G solvation = -3622.048866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.67070 -39.54680 -37.39021 -37.06669 -34.04833 -33.23854 -32.23670 -31.23474 -29.98310 -28.52645 -27.48486 -24.94838 -23.51341 -22.89065 -22.56198 -22.34195 -21.09771 -20.07465 -19.37291 -18.78397 -17.19245 -16.76084 -16.47700 -15.81000 -15.63138 -15.50561 -14.93175 -14.64041 -14.34143 -13.89766 -13.69736 -13.56323 -13.22152 -13.12401 -13.01948 -12.91795 -12.66259 -12.28845 -12.07348 -11.94896 -11.63400 -11.46512 -11.19516 -11.09512 -10.94375 -10.86524 -10.65800 -10.45249 -10.32138 -9.90985 -9.71724 -9.65961 -9.48705 -9.28445 -9.07184 -8.69794 -8.54479 -8.31432 -6.05948 -4.03085 1.43624 2.05414 2.13982 3.07242 3.29968 3.36859 3.38075 3.42184 3.86079 4.12480 4.35696 4.44607 4.58083 4.78842 4.81565 4.84321 4.92184 5.05761 5.09562 5.14341 5.27895 5.35954 5.38090 5.45488 5.48720 5.55105 5.57123 5.63816 5.72284 5.75062 5.93698 6.03839 6.04535 6.10375 6.28440 6.31060 6.34745 6.45787 6.60333 6.69217 6.82676 6.87330 6.97638 7.25187 7.43055 7.44937 7.63545 7.79079 8.38284 8.51997 8.98377 9.57646 11.07265 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.003305 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.726652 B = 8469.857607 C = 8751.606530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.363 5.363 3 C 0.096 3.904 4 C -0.273 4.273 5 C 0.596 3.404 6 O -0.549 6.549 7 N -0.602 5.602 8 C 0.099 3.901 9 C -0.118 4.118 10 C -0.072 4.072 11 C -0.010 4.010 12 C -0.515 4.515 13 H 0.073 0.927 14 C 0.066 3.934 15 N -0.905 5.905 16 Si 0.877 3.123 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.266 1.266 20 C -0.132 4.132 21 C 0.115 3.885 22 C 0.158 3.842 23 C -0.086 4.086 24 C -0.165 4.165 25 C -0.161 4.161 26 N -0.299 5.299 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.185 0.815 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.015 0.985 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.135 0.865 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.575 -12.446 -16.368 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.141 5.141 3 C -0.054 4.054 4 C -0.288 4.288 5 C 0.384 3.616 6 O -0.428 6.428 7 N -0.335 5.335 8 C -0.023 4.023 9 C -0.156 4.156 10 C -0.090 4.090 11 C -0.047 4.047 12 C -0.553 4.553 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.544 5.544 16 Si 0.705 3.295 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.170 4.170 21 C -0.007 4.007 22 C -0.008 4.008 23 C -0.106 4.106 24 C -0.202 4.202 25 C -0.199 4.199 26 N -0.120 5.120 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.202 0.798 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.152 0.848 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.106 -13.515 -16.552 22.224 hybrid contribution 1.123 0.896 0.705 1.600 sum -4.983 -12.620 -15.847 20.861 Atomic orbital electron populations 1.21985 0.73470 1.04827 1.04019 1.48233 1.06992 1.03675 1.55231 1.23116 0.90124 0.93778 0.98392 1.20096 0.92915 0.93671 1.22083 1.17280 0.85760 0.79578 0.78957 1.90712 1.37192 1.71760 1.43086 1.48013 1.21923 1.22845 1.40707 1.22180 0.88979 1.00591 0.90576 1.21964 1.00012 0.99486 0.94185 1.21001 0.94122 0.97103 0.96795 1.19619 0.96683 0.96345 0.92060 1.21131 0.98002 1.41061 0.95107 0.90898 1.25023 0.96732 0.94647 0.97105 1.69911 1.33014 1.44005 1.07485 0.86816 0.85391 0.79206 0.78100 1.20369 1.21505 1.19029 1.22055 0.99017 1.01632 0.94311 1.21630 0.88522 0.92269 0.98305 1.21319 0.91988 0.91549 0.95984 1.20474 0.95382 0.89526 1.05197 1.22983 1.03118 0.94538 0.99576 1.23014 1.03166 1.02127 0.91631 1.77074 1.01098 1.07252 1.26615 0.90066 0.89066 0.88994 0.79802 0.91561 0.90183 0.92313 0.89399 0.91794 0.96677 0.97035 0.92818 0.92007 0.91176 0.89509 0.91743 0.84759 0.88143 0.88306 0.88022 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.55 11.44 59.85 0.68 1.24 16 2 N -0.36 -3.80 3.98 -67.59 -0.27 -4.07 16 3 C 0.10 1.04 9.10 -16.56 -0.15 0.89 16 4 C -0.27 -3.79 5.22 -105.07 -0.55 -4.34 16 5 C 0.60 9.34 7.44 -12.52 -0.09 9.25 16 6 O -0.55 -10.01 15.40 5.28 0.08 -9.93 16 7 N -0.60 -8.76 2.97 -173.77 -0.52 -9.28 16 8 C 0.10 1.33 5.50 -3.49 -0.02 1.31 16 9 C -0.12 -2.01 5.21 -26.38 -0.14 -2.15 16 10 C -0.07 -1.31 2.10 -90.58 -0.19 -1.50 16 11 C -0.01 -0.22 3.52 -27.89 -0.10 -0.32 16 12 C -0.52 -13.95 8.94 -34.44 -0.31 -14.26 16 13 H 0.07 2.09 7.30 -52.49 -0.38 1.71 16 14 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 15 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 16 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 20 C -0.13 -2.09 5.36 -26.61 -0.14 -2.24 16 21 C 0.11 1.65 6.44 -3.71 -0.02 1.62 16 22 C 0.16 2.21 6.79 -82.02 -0.56 1.66 16 23 C -0.09 -1.10 5.99 -91.77 -0.55 -1.65 16 24 C -0.16 -1.70 10.14 -26.69 -0.27 -1.97 16 25 C -0.16 -1.76 10.24 -26.69 -0.27 -2.04 16 26 N -0.30 -3.93 12.08 33.90 0.41 -3.52 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.19 1.40 7.32 -52.48 -0.38 1.01 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.98 4.79 -51.93 -0.25 0.73 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.64 6.91 -51.93 -0.36 1.28 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 37 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.13 1.86 7.15 -51.93 -0.37 1.49 16 44 H 0.10 1.06 7.90 -51.93 -0.41 0.65 16 45 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -33.96 374.65 -8.84 -42.80 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.53 Total: 0.74 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -2.77 Total: -12.73 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.40 Total: -43.37 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.96 -8.84 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569931361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.254 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds