Wall clock time and date at job start Tue Mar 31 2020 11:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34264 * 125.75351 * 2 1 4 4 C 1.38043 * 107.41512 * 180.14846 * 3 2 1 5 5 C 1.47433 * 126.41045 * 179.87251 * 4 3 2 6 6 O 1.21602 * 119.99579 * 220.70222 * 5 4 3 7 7 N 1.34775 * 119.99969 * 40.43286 * 5 4 3 8 8 C 1.46927 * 120.62901 * 5.34452 * 7 5 4 9 9 C 1.53622 * 108.53974 * 126.37319 * 8 7 5 10 10 C 1.53049 * 109.24629 * 54.85498 * 9 8 7 11 11 C 1.52998 * 109.45242 * 178.49541 * 10 9 8 12 12 C 1.50697 * 109.47016 * 295.06432 * 11 10 9 13 13 H 1.07996 * 120.00463 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99361 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99513 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00418 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47203 * 89.99838 * 16 14 12 18 18 H 1.48501 * 109.47247 * 210.00045 * 16 14 12 19 19 H 1.48499 * 109.47136 * 330.00175 * 16 14 12 20 20 C 1.53035 * 109.53594 * 298.51412 * 10 9 8 21 21 C 1.46926 * 120.63169 * 185.63223 * 7 5 4 22 22 C 1.41287 * 107.17167 * 359.61302 * 4 3 2 23 23 C 1.50702 * 125.98837 * 180.27580 * 22 4 3 24 24 C 1.53000 * 117.49959 * 188.74565 * 23 22 4 25 25 C 1.52997 * 117.49688 * 120.08332 * 23 22 4 26 26 N 1.30451 * 108.02320 * 0.23793 * 22 4 3 27 27 H 1.08996 * 109.46778 * 270.30997 * 1 2 3 28 28 H 1.08999 * 109.47401 * 30.30990 * 1 2 3 29 29 H 1.09000 * 109.46546 * 150.31340 * 1 2 3 30 30 H 1.08005 * 126.29057 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.58782 * 246.20390 * 8 7 5 32 32 H 1.08999 * 109.59174 * 6.63703 * 8 7 5 33 33 H 1.08998 * 109.63683 * 294.86362 * 9 8 7 34 34 H 1.09005 * 109.43528 * 174.72482 * 9 8 7 35 35 H 1.09004 * 109.45168 * 58.53122 * 10 9 8 36 36 H 1.09001 * 109.47163 * 55.06541 * 11 10 9 37 37 H 1.08994 * 109.46643 * 175.06303 * 11 10 9 38 38 H 0.97005 * 120.00146 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.49628 * 301.41006 * 20 10 9 40 40 H 1.09001 * 109.49852 * 181.30820 * 20 10 9 41 41 H 1.09004 * 109.58035 * 353.36961 * 21 7 5 42 42 H 1.08993 * 109.58736 * 113.64775 * 21 7 5 43 43 H 1.09000 * 115.54894 * 334.41933 * 23 22 4 44 44 H 1.08998 * 117.49670 * 359.97438 * 24 23 22 45 45 H 1.08998 * 117.49762 * 145.02220 * 24 23 22 46 46 H 1.09005 * 117.50058 * 214.97475 * 25 23 22 47 47 H 1.08997 * 117.50463 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2496 1.0896 0.0000 4 6 3.5599 0.6553 -0.0034 5 6 4.7639 1.5062 -0.0073 6 8 5.7192 1.2047 -0.6966 7 7 4.8035 2.6211 0.7489 8 6 3.7043 2.9403 1.6701 9 6 4.2917 3.1685 3.0711 10 6 5.3785 4.2433 2.9936 11 6 5.9409 4.5011 4.3929 12 6 4.8620 5.0852 5.2681 13 1 3.8742 5.2558 4.8663 14 6 5.1365 5.4026 6.5815 15 7 4.1951 5.9128 7.3451 16 14 6.8452 5.1081 7.2761 17 1 7.6793 6.3191 7.0690 18 1 6.7456 4.8182 8.7292 19 1 7.4692 3.9528 6.5825 20 6 6.5036 3.7679 2.0715 21 6 5.9438 3.5437 0.6632 22 6 3.5311 -0.7573 0.0036 23 6 4.7323 -1.6674 0.0089 24 6 4.4853 -3.1642 -0.1901 25 6 4.8837 -2.6304 1.1881 26 7 2.2827 -1.1356 0.0056 27 1 -0.3633 0.0056 1.0276 28 1 -0.3634 0.8872 -0.5186 29 1 -0.3632 -0.8928 -0.5090 30 1 1.9166 2.1170 0.0004 31 1 3.1954 3.8433 1.3328 32 1 2.9988 2.1099 1.6990 33 1 4.7245 2.2396 3.4425 34 1 3.5019 3.4978 3.7463 35 1 4.9503 5.1647 2.5988 36 1 6.2891 3.5621 4.8232 37 1 6.7735 5.2012 4.3264 38 1 4.3882 6.1365 8.2690 39 1 6.9156 2.8333 2.4523 40 1 7.2880 4.5238 2.0350 41 1 6.7165 3.1113 0.0274 42 1 5.6143 4.4938 0.2431 43 1 5.6429 -1.2465 -0.4173 44 1 3.4541 -3.4906 -0.3244 45 1 5.2337 -3.7281 -0.7470 46 1 5.8941 -2.8434 1.5374 47 1 4.1149 -2.6054 1.9604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569931361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:08 Heat of formation + Delta-G solvation = 39.227930 kcal Electronic energy + Delta-G solvation = -26964.704458 eV Core-core repulsion = 23341.778540 eV Total energy + Delta-G solvation = -3622.925918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.57771 -40.72272 -38.60585 -38.05982 -35.64849 -34.18779 -33.89835 -32.45046 -31.06768 -30.16140 -28.22345 -26.41790 -24.60198 -24.17136 -23.56289 -23.28755 -22.40395 -21.32864 -20.53617 -19.85916 -18.84118 -18.19632 -17.54742 -16.70394 -16.60434 -16.40385 -16.31995 -15.93042 -15.56769 -15.27580 -15.03918 -14.88056 -14.45496 -14.30564 -14.18324 -13.89466 -13.62481 -13.56863 -13.45627 -13.08240 -12.91439 -12.78988 -12.45016 -12.40518 -12.16828 -12.02110 -11.98078 -11.79182 -11.70954 -11.37394 -11.30456 -11.16458 -10.90874 -10.83777 -10.70246 -10.17578 -9.70706 -9.43832 -8.24580 -6.25234 0.57504 1.04899 1.35460 1.38168 1.43021 1.48681 1.95121 2.28183 2.38427 2.97765 3.11440 3.28814 3.54504 3.80041 3.91080 3.94795 3.97221 4.04224 4.10550 4.18032 4.26819 4.31288 4.42964 4.44092 4.47779 4.56382 4.66314 4.70555 4.72434 4.73986 4.83292 4.90303 4.92136 4.97510 5.11303 5.15256 5.20288 5.22416 5.26805 5.36442 5.39049 5.45479 5.65052 5.75780 5.75892 5.90245 6.35573 6.44366 6.57466 6.81965 7.22627 7.38631 8.91425 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.003305 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.726652 B = 8469.857607 C = 8751.606530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.357 5.357 3 C 0.114 3.886 4 C -0.309 4.309 5 C 0.596 3.404 6 O -0.583 6.583 7 N -0.602 5.602 8 C 0.110 3.890 9 C -0.114 4.114 10 C -0.068 4.068 11 C -0.009 4.009 12 C -0.512 4.512 13 H 0.046 0.954 14 C 0.006 3.994 15 N -0.951 5.951 16 Si 0.938 3.062 17 H -0.268 1.268 18 H -0.288 1.288 19 H -0.254 1.254 20 C -0.123 4.123 21 C 0.118 3.882 22 C 0.142 3.858 23 C -0.109 4.109 24 C -0.147 4.147 25 C -0.157 4.157 26 N -0.319 5.319 27 H 0.092 0.908 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.220 0.780 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.008 0.992 37 H 0.015 0.985 38 H 0.263 0.737 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.098 0.902 45 H 0.117 0.883 46 H 0.113 0.887 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.931 -12.668 -17.558 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.135 5.135 3 C -0.038 4.038 4 C -0.324 4.324 5 C 0.386 3.614 6 O -0.464 6.464 7 N -0.334 5.334 8 C -0.012 4.012 9 C -0.153 4.153 10 C -0.086 4.086 11 C -0.046 4.046 12 C -0.551 4.551 13 H 0.064 0.936 14 C -0.191 4.191 15 N -0.592 5.592 16 Si 0.763 3.237 17 H -0.193 1.193 18 H -0.214 1.214 19 H -0.178 1.178 20 C -0.161 4.161 21 C -0.004 4.004 22 C -0.024 4.024 23 C -0.129 4.129 24 C -0.184 4.184 25 C -0.196 4.196 26 N -0.141 5.141 27 H 0.111 0.889 28 H 0.141 0.859 29 H 0.116 0.884 30 H 0.237 0.763 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.026 0.974 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.135 0.865 44 H 0.117 0.883 45 H 0.136 0.864 46 H 0.131 0.869 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.483 -13.751 -17.750 23.371 hybrid contribution 1.100 0.975 1.070 1.818 sum -5.383 -12.776 -16.680 21.689 Atomic orbital electron populations 1.22426 0.70668 1.06761 1.05391 1.48657 1.08475 1.02932 1.53435 1.23558 0.89024 0.95171 0.96050 1.20112 0.93570 0.93617 1.25117 1.17536 0.85917 0.79520 0.78415 1.90684 1.38634 1.72484 1.44611 1.48054 1.22147 1.22662 1.40489 1.22146 0.88647 1.02373 0.88002 1.21849 0.99023 0.98130 0.96277 1.20916 0.95252 0.97792 0.94676 1.19593 0.95540 0.95486 0.93980 1.21454 0.98017 1.39991 0.95598 0.93617 1.25878 1.00616 0.94818 0.97770 1.70048 1.35264 1.45951 1.07939 0.85829 0.80803 0.79722 0.77312 1.19349 1.21420 1.17788 1.21947 0.98333 1.01255 0.94596 1.21620 0.88596 0.93169 0.97018 1.21511 0.92527 0.91977 0.96356 1.20447 0.94878 0.90709 1.06852 1.23028 1.03518 0.92848 0.98995 1.23043 1.03614 1.01379 0.91521 1.77011 1.01051 1.08729 1.27327 0.88924 0.85853 0.88444 0.76340 0.88983 0.88691 0.93841 0.91492 0.91572 0.97395 0.96693 0.92798 0.93244 0.89912 0.89920 0.89577 0.86518 0.88345 0.86438 0.86876 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.44 127.77 1.46 2.17 16 2 N -0.36 -6.65 3.98 -367.76 -1.46 -8.11 16 3 C 0.11 2.16 9.10 84.27 0.77 2.93 16 4 C -0.31 -8.29 5.22 -20.15 -0.11 -8.40 16 5 C 0.60 18.26 7.44 86.67 0.64 18.90 16 6 O -0.58 -21.40 15.40 -4.04 -0.06 -21.46 16 7 N -0.60 -16.52 2.97 -821.94 -2.44 -18.96 16 8 C 0.11 2.73 5.50 86.51 0.48 3.20 16 9 C -0.11 -3.82 5.21 30.82 0.16 -3.66 16 10 C -0.07 -2.42 2.10 -10.77 -0.02 -2.44 16 11 C -0.01 -0.39 3.52 29.85 0.10 -0.28 16 12 C -0.51 -28.03 8.94 25.60 0.23 -27.80 16 13 H 0.05 2.68 7.30 -2.91 -0.02 2.66 16 14 C 0.01 0.32 5.47 84.66 0.46 0.78 16 15 N -0.95 -58.32 13.96 21.45 0.30 -58.02 16 16 Si 0.94 44.20 27.47 68.60 1.88 46.09 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 19 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 20 C -0.12 -3.72 5.36 30.67 0.16 -3.55 16 21 C 0.12 3.17 6.44 86.36 0.56 3.72 16 22 C 0.14 3.94 6.79 43.51 0.30 4.24 16 23 C -0.11 -2.82 5.99 -11.54 -0.07 -2.89 16 24 C -0.15 -2.94 10.14 30.62 0.31 -2.62 16 25 C -0.16 -3.42 10.24 30.62 0.31 -3.10 16 26 N -0.32 -8.07 12.08 -46.68 -0.56 -8.64 16 27 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.22 2.39 7.32 -2.91 -0.02 2.37 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.10 2.09 4.79 -2.39 -0.01 2.08 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 2.51 6.91 -2.38 -0.02 2.49 16 35 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.01 0.36 7.20 -2.39 -0.02 0.34 16 37 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 38 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.08 2.34 7.00 -2.38 -0.02 2.32 16 42 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.12 3.39 7.15 -2.39 -0.02 3.37 16 44 H 0.10 2.01 7.90 -2.39 -0.02 1.99 16 45 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 47 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -75.41 374.65 4.31 -71.10 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.90 Total: 16.80 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 5.75 Total: -18.80 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -4.17 Total: -93.73 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.06 Total: -21.46 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.09 kcal Total: -75.41 4.31 -71.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569931361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.325 kcal (2) G-P(sol) polarization free energy of solvation -75.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds