Wall clock time and date at job start Tue Mar 31 2020 11:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99677 * 2 1 4 4 C 1.50692 * 109.47177 * 66.04533 * 3 2 1 5 5 H 1.08006 * 120.00361 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00150 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99811 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00500 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47154 * 89.99677 * 8 6 4 10 10 H 1.48497 * 109.47558 * 210.00050 * 8 6 4 11 11 H 1.48507 * 109.46713 * 329.99929 * 8 6 4 12 12 C 1.46898 * 111.00367 * 236.04463 * 2 1 3 13 13 C 1.53003 * 109.46898 * 293.95304 * 12 2 1 14 14 H 1.08994 * 109.47074 * 60.00230 * 13 12 2 15 15 O 1.42902 * 109.46873 * 299.99764 * 13 12 2 16 16 C 1.53005 * 109.46620 * 179.97438 * 13 12 2 17 17 N 1.46502 * 109.46567 * 184.99840 * 16 13 12 18 18 C 1.39572 * 119.99885 * 179.97438 * 17 16 13 19 19 C 1.38369 * 120.23812 * 0.02562 * 18 17 16 20 20 C 1.38700 * 120.29227 * 179.97438 * 19 18 17 21 21 C 1.37785 * 120.73818 * 0.02562 * 20 19 18 22 22 C 1.39210 * 120.06241 * 0.02562 * 21 20 19 23 23 C 1.40173 * 120.23949 * 179.97438 * 18 17 16 24 24 C 1.46463 * 133.98436 * 0.05152 * 23 18 17 25 25 C 1.34214 * 106.99308 * 179.97438 * 24 23 18 26 26 N 1.36956 * 109.88190 * 0.02562 * 25 24 23 27 27 C 1.46499 * 125.07568 * 180.02562 * 26 25 24 28 28 H 1.09001 * 109.46642 * 183.95456 * 1 2 3 29 29 H 1.09000 * 109.47292 * 303.95543 * 1 2 3 30 30 H 1.08998 * 109.47139 * 63.96113 * 1 2 3 31 31 H 1.08996 * 109.46828 * 186.04496 * 3 2 1 32 32 H 1.09001 * 109.46741 * 306.04277 * 3 2 1 33 33 H 0.97000 * 119.99847 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47505 * 173.95376 * 12 2 1 35 35 H 1.08999 * 109.46947 * 53.95325 * 12 2 1 36 36 H 0.96696 * 113.99934 * 299.99328 * 15 13 12 37 37 H 1.08998 * 109.47263 * 65.00105 * 16 13 12 38 38 H 1.08990 * 109.47180 * 304.99658 * 16 13 12 39 39 H 0.97001 * 120.00626 * 0.02562 * 17 16 13 40 40 H 1.08002 * 119.85336 * 359.97438 * 19 18 17 41 41 H 1.08001 * 119.63080 * 180.02562 * 20 19 18 42 42 H 1.07997 * 119.96899 * 179.72222 * 21 20 19 43 43 H 1.08000 * 126.50565 * 359.97421 * 24 23 18 44 44 H 1.07997 * 125.05966 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.47272 * 89.97237 * 27 26 25 46 46 H 1.08997 * 109.47351 * 209.97718 * 27 26 25 47 47 H 1.09000 * 109.46689 * 329.97373 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0738 1.5115 2.0485 6 6 2.0266 3.3495 1.5284 7 7 2.7117 4.0020 0.6148 8 14 1.5816 4.1874 3.1375 9 1 2.6581 3.9514 4.1328 10 1 1.4289 5.6469 2.9101 11 1 0.3037 3.6298 3.6490 12 6 1.9955 -0.7660 -1.1375 13 6 1.6315 -2.2426 -0.9702 14 1 0.5473 -2.3475 -0.9322 15 8 2.2010 -2.7390 0.2428 16 6 2.1794 -3.0403 -2.1554 17 7 1.7302 -4.4313 -2.0571 18 6 2.1059 -5.3564 -3.0323 19 6 2.9029 -4.9654 -4.0936 20 6 3.2773 -5.8839 -5.0631 21 6 2.8637 -7.1960 -4.9871 22 6 2.0605 -7.6140 -3.9297 23 6 1.6794 -6.6887 -2.9430 24 6 0.8539 -7.4306 -1.9872 25 6 0.7878 -8.6971 -2.4263 26 7 1.5050 -8.8261 -3.5859 27 6 1.6556 -10.0676 -4.3490 28 1 -0.3633 -1.0253 0.0709 29 1 -0.3634 0.5740 0.8524 30 1 -0.3633 0.4511 -0.9233 31 1 3.0796 1.3445 -0.1082 32 1 1.5610 1.9273 -0.8310 33 1 2.9863 4.9181 0.7768 34 1 3.0798 -0.6611 -1.1756 35 1 1.5612 -0.3873 -2.0627 36 1 3.1653 -2.6771 0.2788 37 1 3.2689 -3.0085 -2.1422 38 1 1.8145 -2.6055 -3.0857 39 1 1.1711 -4.7092 -1.3148 40 1 3.2349 -3.9403 -4.1675 41 1 3.8999 -5.5672 -5.8867 42 1 3.1589 -7.8998 -5.7512 43 1 0.3870 -7.0337 -1.0979 44 1 0.2499 -9.4959 -1.9375 45 1 0.8533 -10.1425 -5.0830 46 1 2.6176 -10.0648 -4.8613 47 1 1.6079 -10.9192 -3.6703 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571910418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:56 Heat of formation + Delta-G solvation = 21.483075 kcal Electronic energy + Delta-G solvation = -25597.178096 eV Core-core repulsion = 21973.482703 eV Total energy + Delta-G solvation = -3623.695393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33644 -38.63543 -37.40161 -35.67983 -34.59731 -32.79285 -32.51947 -30.40493 -29.29629 -28.23362 -27.05666 -26.50366 -25.80142 -23.88704 -22.32658 -21.95131 -21.04291 -20.32766 -19.81560 -17.74766 -16.74787 -16.39104 -16.10707 -15.94859 -15.65544 -15.50398 -15.19453 -14.80134 -14.50552 -14.20211 -13.91064 -13.64166 -13.43191 -13.39745 -13.25874 -12.83254 -12.76760 -12.50258 -12.45702 -11.92372 -11.55750 -11.44117 -11.36179 -11.24031 -11.13874 -10.90728 -10.79262 -10.64861 -10.33682 -10.26944 -10.03153 -9.67459 -9.15398 -8.71070 -8.43581 -8.26242 -7.22754 -6.98573 -6.02945 -4.03967 1.28472 1.67136 2.64327 2.65254 3.32930 3.38243 3.39081 3.42992 3.95197 4.40630 4.46693 4.57594 4.65327 4.72730 4.74630 4.84362 5.04312 5.05678 5.13914 5.15996 5.26776 5.34048 5.39561 5.41591 5.54346 5.59233 5.65561 5.68235 5.88643 5.91931 6.02629 6.16546 6.24633 6.28684 6.35285 6.57579 6.59718 6.69116 6.75362 7.02054 7.22665 7.25254 7.31450 7.38414 7.73584 7.79498 7.92638 8.08428 8.18377 8.53916 9.03919 9.60239 11.07976 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.034108 B = 0.002046 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.715151 B =13680.441156 C =14239.105911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.026 3.974 13 C 0.103 3.897 14 H 0.099 0.901 15 O -0.544 6.544 16 C 0.092 3.908 17 N -0.731 5.731 18 C 0.274 3.726 19 C -0.246 4.246 20 C -0.042 4.042 21 C -0.203 4.203 22 C 0.141 3.859 23 C -0.175 4.175 24 C -0.184 4.184 25 C 0.027 3.973 26 N -0.491 5.491 27 C 0.082 3.918 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.009 0.991 31 H 0.029 0.971 32 H -0.010 1.010 33 H 0.261 0.739 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.373 0.627 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.404 0.596 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.142 0.858 44 H 0.164 0.836 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 -26.686 -11.797 29.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.103 4.103 13 C 0.043 3.957 14 H 0.117 0.883 15 O -0.348 6.348 16 C -0.034 4.034 17 N -0.358 5.358 18 C 0.167 3.833 19 C -0.271 4.271 20 C -0.062 4.062 21 C -0.226 4.226 22 C 0.034 3.966 23 C -0.182 4.182 24 C -0.209 4.209 25 C -0.097 4.097 26 N -0.176 5.176 27 C -0.060 4.060 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.027 0.973 31 H 0.047 0.953 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.220 0.780 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.239 0.761 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.128 0.872 43 H 0.160 0.840 44 H 0.181 0.819 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.716 -26.945 -11.407 29.310 hybrid contribution -0.076 0.960 0.064 0.965 sum -1.793 -25.985 -11.344 28.410 Atomic orbital electron populations 1.22256 0.88968 0.99549 1.00489 1.62025 1.06863 1.17488 1.38928 1.19749 0.95303 0.81514 0.96680 1.21163 1.34745 0.96848 1.01675 0.91789 1.25002 0.95350 0.97358 0.97033 1.69961 1.38485 1.11475 1.34028 0.86478 0.78888 0.78354 0.83568 1.20617 1.21360 1.19859 1.22648 1.00769 0.93190 0.93743 1.22118 0.98645 0.91829 0.83147 0.88287 1.86573 1.25463 1.84854 1.37915 1.22127 0.99610 0.81866 0.99764 1.44587 1.56677 1.07593 1.26909 1.17247 0.91168 0.86552 0.88317 1.20314 1.08405 1.00505 0.97883 1.20477 0.96796 0.91725 0.97155 1.19637 1.06551 0.96885 0.99561 1.17978 0.97705 0.84470 0.96454 1.18616 1.07880 0.92298 0.99430 1.21527 1.05229 0.92897 1.01260 1.21636 1.00449 0.98547 0.89066 1.43804 1.44190 1.07661 1.21915 1.21867 1.02962 0.84663 0.96513 0.93552 0.90622 0.97265 0.95315 0.99231 0.92949 0.90884 0.95057 0.78016 0.91713 0.91416 0.76113 0.86176 0.86138 0.87191 0.84048 0.81911 0.91598 0.90261 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.14 60.06 0.55 1.25 16 2 N -0.53 -11.25 4.62 -244.38 -1.13 -12.38 16 3 C 0.19 4.99 4.72 -4.98 -0.02 4.97 16 4 C -0.51 -14.27 8.46 -34.44 -0.29 -14.56 16 5 H 0.06 1.80 7.12 -52.48 -0.37 1.43 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.75 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 12 C 0.03 0.44 4.62 -3.82 -0.02 0.42 16 13 C 0.10 1.40 2.87 -26.73 -0.08 1.32 16 14 H 0.10 1.40 6.55 -51.93 -0.34 1.06 16 15 O -0.54 -8.05 13.15 -35.23 -0.46 -8.51 16 16 C 0.09 1.05 4.55 -4.04 -0.02 1.04 16 17 N -0.73 -8.65 5.68 -58.46 -0.33 -8.98 16 18 C 0.27 3.46 6.68 -83.56 -0.56 2.91 16 19 C -0.25 -2.93 9.31 -39.36 -0.37 -3.30 16 20 C -0.04 -0.44 10.00 -39.58 -0.40 -0.84 16 21 C -0.20 -2.19 9.94 -39.39 -0.39 -2.58 16 22 C 0.14 1.67 6.80 -84.01 -0.57 1.09 16 23 C -0.17 -2.21 6.27 -105.00 -0.66 -2.87 16 24 C -0.18 -2.00 10.86 -37.69 -0.41 -2.41 16 25 C 0.03 0.24 11.29 -16.68 -0.19 0.05 16 26 N -0.49 -4.66 3.18 -121.79 -0.39 -5.05 16 27 C 0.08 0.44 11.03 59.85 0.66 1.10 16 28 H 0.05 0.79 6.47 -51.93 -0.34 0.45 16 29 H 0.08 1.61 6.76 -51.93 -0.35 1.26 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 32 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 33 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 34 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 35 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.37 4.63 9.05 45.56 0.41 5.05 16 37 H 0.06 0.71 7.95 -51.93 -0.41 0.30 16 38 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 39 H 0.40 4.73 8.30 -40.82 -0.34 4.39 16 40 H 0.12 1.32 6.72 -52.49 -0.35 0.97 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 44 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 47 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 384.82 15.07 5.80 5.80 Total: -1.00 -33.20 384.82 -10.34 -43.54 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.69 Total: 5.80 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.86 Total: -10.96 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -1.11 Total: -52.42 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.46 Total: -8.51 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.20 -10.34 -43.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571910418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.020 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds