Wall clock time and date at job start Tue Mar 31 2020 11:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99677 * 2 1 4 4 C 1.50692 * 109.47177 * 66.04533 * 3 2 1 5 5 H 1.08006 * 120.00361 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00150 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99811 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00500 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47154 * 89.99677 * 8 6 4 10 10 H 1.48497 * 109.47558 * 210.00050 * 8 6 4 11 11 H 1.48507 * 109.46713 * 329.99929 * 8 6 4 12 12 C 1.46898 * 111.00367 * 236.04463 * 2 1 3 13 13 C 1.53003 * 109.46898 * 293.95304 * 12 2 1 14 14 H 1.08994 * 109.47074 * 60.00230 * 13 12 2 15 15 O 1.42902 * 109.46873 * 299.99764 * 13 12 2 16 16 C 1.53005 * 109.46620 * 179.97438 * 13 12 2 17 17 N 1.46502 * 109.46567 * 184.99840 * 16 13 12 18 18 C 1.39572 * 119.99885 * 179.97438 * 17 16 13 19 19 C 1.38369 * 120.23812 * 0.02562 * 18 17 16 20 20 C 1.38700 * 120.29227 * 179.97438 * 19 18 17 21 21 C 1.37785 * 120.73818 * 0.02562 * 20 19 18 22 22 C 1.39210 * 120.06241 * 0.02562 * 21 20 19 23 23 C 1.40173 * 120.23949 * 179.97438 * 18 17 16 24 24 C 1.46463 * 133.98436 * 0.05152 * 23 18 17 25 25 C 1.34214 * 106.99308 * 179.97438 * 24 23 18 26 26 N 1.36956 * 109.88190 * 0.02562 * 25 24 23 27 27 C 1.46499 * 125.07568 * 180.02562 * 26 25 24 28 28 H 1.09001 * 109.46642 * 183.95456 * 1 2 3 29 29 H 1.09000 * 109.47292 * 303.95543 * 1 2 3 30 30 H 1.08998 * 109.47139 * 63.96113 * 1 2 3 31 31 H 1.08996 * 109.46828 * 186.04496 * 3 2 1 32 32 H 1.09001 * 109.46741 * 306.04277 * 3 2 1 33 33 H 0.97000 * 119.99847 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47505 * 173.95376 * 12 2 1 35 35 H 1.08999 * 109.46947 * 53.95325 * 12 2 1 36 36 H 0.96696 * 113.99934 * 299.99328 * 15 13 12 37 37 H 1.08998 * 109.47263 * 65.00105 * 16 13 12 38 38 H 1.08990 * 109.47180 * 304.99658 * 16 13 12 39 39 H 0.97001 * 120.00626 * 0.02562 * 17 16 13 40 40 H 1.08002 * 119.85336 * 359.97438 * 19 18 17 41 41 H 1.08001 * 119.63080 * 180.02562 * 20 19 18 42 42 H 1.07997 * 119.96899 * 179.72222 * 21 20 19 43 43 H 1.08000 * 126.50565 * 359.97421 * 24 23 18 44 44 H 1.07997 * 125.05966 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.47272 * 89.97237 * 27 26 25 46 46 H 1.08997 * 109.47351 * 209.97718 * 27 26 25 47 47 H 1.09000 * 109.46689 * 329.97373 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0738 1.5115 2.0485 6 6 2.0266 3.3495 1.5284 7 7 2.7117 4.0020 0.6148 8 14 1.5816 4.1874 3.1375 9 1 2.6581 3.9514 4.1328 10 1 1.4289 5.6469 2.9101 11 1 0.3037 3.6298 3.6490 12 6 1.9955 -0.7660 -1.1375 13 6 1.6315 -2.2426 -0.9702 14 1 0.5473 -2.3475 -0.9322 15 8 2.2010 -2.7390 0.2428 16 6 2.1794 -3.0403 -2.1554 17 7 1.7302 -4.4313 -2.0571 18 6 2.1059 -5.3564 -3.0323 19 6 2.9029 -4.9654 -4.0936 20 6 3.2773 -5.8839 -5.0631 21 6 2.8637 -7.1960 -4.9871 22 6 2.0605 -7.6140 -3.9297 23 6 1.6794 -6.6887 -2.9430 24 6 0.8539 -7.4306 -1.9872 25 6 0.7878 -8.6971 -2.4263 26 7 1.5050 -8.8261 -3.5859 27 6 1.6556 -10.0676 -4.3490 28 1 -0.3633 -1.0253 0.0709 29 1 -0.3634 0.5740 0.8524 30 1 -0.3633 0.4511 -0.9233 31 1 3.0796 1.3445 -0.1082 32 1 1.5610 1.9273 -0.8310 33 1 2.9863 4.9181 0.7768 34 1 3.0798 -0.6611 -1.1756 35 1 1.5612 -0.3873 -2.0627 36 1 3.1653 -2.6771 0.2788 37 1 3.2689 -3.0085 -2.1422 38 1 1.8145 -2.6055 -3.0857 39 1 1.1711 -4.7092 -1.3148 40 1 3.2349 -3.9403 -4.1675 41 1 3.8999 -5.5672 -5.8867 42 1 3.1589 -7.8998 -5.7512 43 1 0.3870 -7.0337 -1.0979 44 1 0.2499 -9.4959 -1.9375 45 1 0.8533 -10.1425 -5.0830 46 1 2.6176 -10.0648 -4.8613 47 1 1.6079 -10.9192 -3.6703 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571910418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:55 Heat of formation + Delta-G solvation = -1.757021 kcal Electronic energy + Delta-G solvation = -25598.185862 eV Core-core repulsion = 21973.482703 eV Total energy + Delta-G solvation = -3624.703159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.07514 -39.78389 -38.43482 -37.12802 -35.53983 -34.61836 -33.46390 -31.54577 -30.11108 -29.53628 -28.71516 -27.31043 -26.99883 -25.40382 -23.26399 -23.09280 -22.07840 -21.81549 -20.64390 -18.57398 -18.54459 -17.51258 -17.22129 -17.04312 -16.73609 -16.48588 -16.15556 -16.10542 -15.84358 -15.48515 -15.24467 -14.94770 -14.47566 -14.27732 -14.11004 -14.04444 -13.79707 -13.48685 -13.42176 -13.22272 -13.04491 -12.83959 -12.63071 -12.53968 -12.40635 -12.31160 -12.16120 -12.03051 -12.00967 -11.64695 -11.41976 -11.10344 -10.81090 -10.61576 -9.48453 -9.06063 -8.97319 -8.20730 -7.80954 -6.30358 0.48976 0.82306 1.41239 1.42678 1.53729 1.90146 2.02549 2.38531 2.46967 3.10656 3.11581 3.25270 3.61395 3.85856 3.96688 4.01275 4.03470 4.06797 4.18301 4.34061 4.41997 4.44114 4.50255 4.53715 4.62852 4.65735 4.71965 4.74646 4.75651 4.80837 4.91513 5.05601 5.09070 5.11937 5.13586 5.17855 5.31231 5.46931 5.64711 5.77397 5.79579 5.90954 6.04755 6.24886 6.31045 6.52150 6.56157 6.62799 6.82702 6.85535 6.92446 7.39190 8.90120 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.034108 B = 0.002046 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.715151 B =13680.441156 C =14239.105911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.538 5.538 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.026 3.974 13 C 0.120 3.880 14 H 0.099 0.901 15 O -0.558 6.558 16 C 0.105 3.895 17 N -0.731 5.731 18 C 0.253 3.747 19 C -0.259 4.259 20 C -0.051 4.051 21 C -0.205 4.205 22 C 0.119 3.881 23 C -0.199 4.199 24 C -0.216 4.216 25 C 0.039 3.961 26 N -0.493 5.493 27 C 0.074 3.926 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.012 0.988 31 H 0.006 0.994 32 H -0.038 1.038 33 H 0.264 0.736 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.383 0.617 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.403 0.597 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.131 0.869 43 H 0.147 0.853 44 H 0.199 0.801 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 -28.766 -11.805 31.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.262 5.262 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.574 5.574 8 Si 0.794 3.206 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.104 4.104 13 C 0.060 3.940 14 H 0.116 0.884 15 O -0.364 6.364 16 C -0.021 4.021 17 N -0.359 5.359 18 C 0.148 3.852 19 C -0.285 4.285 20 C -0.071 4.071 21 C -0.228 4.228 22 C 0.010 3.990 23 C -0.207 4.207 24 C -0.241 4.241 25 C -0.086 4.086 26 N -0.176 5.176 27 C -0.066 4.066 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.024 0.976 32 H -0.020 1.020 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.231 0.769 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.238 0.762 40 H 0.142 0.858 41 H 0.160 0.840 42 H 0.148 0.852 43 H 0.165 0.835 44 H 0.216 0.784 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.193 -29.070 -11.437 31.316 hybrid contribution 0.076 1.474 -0.004 1.476 sum -2.117 -27.596 -11.440 29.948 Atomic orbital electron populations 1.22233 0.87899 1.01059 0.99693 1.61921 1.07923 1.14920 1.41475 1.19400 0.93756 0.83836 0.94911 1.21468 1.34800 0.97461 1.02422 0.92093 1.25913 0.95092 0.98068 1.00690 1.70080 1.39383 1.11910 1.36065 0.85381 0.78925 0.77244 0.79051 1.19879 1.20714 1.18987 1.22749 1.00720 0.94551 0.92352 1.21899 0.98578 0.89792 0.83733 0.88374 1.86543 1.26512 1.84779 1.38528 1.21930 0.99778 0.81663 0.98709 1.44484 1.56990 1.07424 1.26994 1.17441 0.92017 0.86954 0.88825 1.20518 1.08642 1.01062 0.98229 1.20780 0.97061 0.91713 0.97563 1.19939 1.05848 0.97316 0.99667 1.18287 0.98414 0.85504 0.96761 1.18988 1.08543 0.92693 1.00455 1.21748 1.06502 0.93845 1.01983 1.22207 0.99119 0.98807 0.88461 1.44135 1.43312 1.08111 1.22064 1.22161 1.03760 0.83632 0.97077 0.90586 0.92676 0.96990 0.97601 1.02030 0.92690 0.90832 0.94497 0.76891 0.91163 0.90938 0.76237 0.85831 0.83955 0.85160 0.83545 0.78448 0.90544 0.89640 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 9.14 127.69 1.17 2.70 16 2 N -0.54 -23.10 4.62 -927.07 -4.28 -27.38 16 3 C 0.21 11.07 4.72 85.55 0.40 11.48 16 4 C -0.52 -30.02 8.46 25.60 0.22 -29.81 16 5 H 0.06 3.46 7.12 -2.91 -0.02 3.44 16 6 C 0.00 0.02 5.46 84.65 0.46 0.48 16 7 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 8 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 12 C 0.03 0.85 4.62 86.30 0.40 1.25 16 13 C 0.12 3.18 2.87 30.60 0.09 3.27 16 14 H 0.10 2.64 6.55 -2.39 -0.02 2.63 16 15 O -0.56 -16.08 13.15 -148.98 -1.96 -18.04 16 16 C 0.10 2.33 4.55 86.38 0.39 2.73 16 17 N -0.73 -17.12 5.68 -338.87 -1.92 -19.05 16 18 C 0.25 6.40 6.68 38.41 0.26 6.66 16 19 C -0.26 -6.09 9.31 22.41 0.21 -5.89 16 20 C -0.05 -1.05 10.00 22.27 0.22 -0.83 16 21 C -0.20 -4.15 9.94 22.40 0.22 -3.93 16 22 C 0.12 2.68 6.80 39.01 0.27 2.94 16 23 C -0.20 -4.99 6.27 -20.11 -0.13 -5.12 16 24 C -0.22 -4.56 10.86 23.50 0.26 -4.30 16 25 C 0.04 0.63 11.29 82.97 0.94 1.56 16 26 N -0.49 -8.38 3.18 -539.24 -1.72 -10.10 16 27 C 0.07 0.60 11.03 127.77 1.41 2.00 16 28 H 0.08 2.49 6.47 -2.39 -0.02 2.48 16 29 H 0.05 2.35 6.76 -2.39 -0.02 2.34 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.01 0.34 7.93 -2.39 -0.02 0.32 16 32 H -0.04 -2.20 8.12 -2.39 -0.02 -2.22 16 33 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.07 2.42 7.93 -2.39 -0.02 2.40 16 35 H 0.04 1.20 8.12 -2.39 -0.02 1.18 16 36 H 0.38 9.28 9.05 -74.06 -0.67 8.61 16 37 H 0.07 1.50 7.95 -2.39 -0.02 1.48 16 38 H 0.07 1.56 7.95 -2.39 -0.02 1.55 16 39 H 0.40 9.38 8.30 -92.71 -0.77 8.61 16 40 H 0.12 2.67 6.72 -2.91 -0.02 2.65 16 41 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 42 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 44 H 0.20 1.61 8.06 -2.91 -0.02 1.58 16 45 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.08 0.59 8.10 -2.39 -0.02 0.57 16 47 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -72.22 384.82 -1.25 -73.47 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -0.46 Total: 25.23 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 6.78 Total: -14.80 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -7.64 Total: -112.65 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -1.96 Total: -18.04 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -72.22 -1.25 -73.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571910418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.717 kcal (2) G-P(sol) polarization free energy of solvation -72.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds