Wall clock time and date at job start Tue Mar 31 2020 11:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 111.00238 * 2 1 4 4 C 1.50696 * 109.47182 * 293.95479 * 3 2 1 5 5 H 1.08005 * 120.00203 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00326 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99825 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00273 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47467 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47463 * 120.00458 * 8 6 4 11 11 H 1.48506 * 109.47343 * 240.00145 * 8 6 4 12 12 C 1.46898 * 111.00006 * 123.95415 * 2 1 3 13 13 C 1.53002 * 109.47268 * 66.04545 * 12 2 1 14 14 H 1.08996 * 109.46789 * 305.00419 * 13 12 2 15 15 O 1.42906 * 109.47033 * 64.99840 * 13 12 2 16 16 C 1.53000 * 109.47492 * 184.99946 * 13 12 2 17 17 N 1.46492 * 109.47048 * 180.02562 * 16 13 12 18 18 C 1.39573 * 119.99880 * 180.02562 * 17 16 13 19 19 C 1.38369 * 120.23846 * 359.97438 * 18 17 16 20 20 C 1.38700 * 120.29263 * 180.02562 * 19 18 17 21 21 C 1.37785 * 120.73818 * 359.97438 * 20 19 18 22 22 C 1.39210 * 120.06241 * 0.02562 * 21 20 19 23 23 C 1.40173 * 120.23949 * 179.97438 * 18 17 16 24 24 C 1.46464 * 133.98402 * 0.04750 * 23 18 17 25 25 C 1.34214 * 106.99262 * 179.97438 * 24 23 18 26 26 N 1.36957 * 109.88230 * 359.97438 * 25 24 23 27 27 C 1.46500 * 125.07604 * 180.02562 * 26 25 24 28 28 H 1.09008 * 109.46859 * 296.04560 * 1 2 3 29 29 H 1.08997 * 109.47052 * 56.04054 * 1 2 3 30 30 H 1.08997 * 109.47251 * 176.04499 * 1 2 3 31 31 H 1.09004 * 109.46774 * 53.95621 * 3 2 1 32 32 H 1.08998 * 109.47098 * 173.95477 * 3 2 1 33 33 H 0.96998 * 119.99774 * 180.02562 * 7 6 4 34 34 H 1.08992 * 109.47427 * 306.04637 * 12 2 1 35 35 H 1.09007 * 109.47466 * 186.04166 * 12 2 1 36 36 H 0.96696 * 114.00005 * 59.99854 * 15 13 12 37 37 H 1.09001 * 109.46679 * 59.99624 * 16 13 12 38 38 H 1.09003 * 109.46650 * 300.00064 * 16 13 12 39 39 H 0.97001 * 120.00597 * 359.97438 * 17 16 13 40 40 H 1.08002 * 119.85302 * 359.97438 * 19 18 17 41 41 H 1.08001 * 119.63080 * 179.97438 * 20 19 18 42 42 H 1.07997 * 119.96899 * 179.72222 * 21 20 19 43 43 H 1.08001 * 126.50581 * 359.97438 * 24 23 18 44 44 H 1.07997 * 125.05930 * 179.97438 * 25 24 23 45 45 H 1.09006 * 109.46984 * 89.97613 * 27 26 25 46 46 H 1.08993 * 109.47533 * 209.97579 * 27 26 25 47 47 H 1.08996 * 109.46784 * 329.98159 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0740 1.5116 -2.0485 6 6 2.0269 3.3494 -1.5285 7 7 2.7121 4.0019 -0.6149 8 14 1.5819 4.1872 -3.1376 9 1 0.8137 3.2451 -3.9904 10 1 0.7544 5.3883 -2.8582 11 1 2.8233 4.5948 -3.8434 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9704 14 1 0.5532 -2.3388 0.8432 15 8 2.2956 -2.7696 -0.1801 16 6 2.0699 -3.0200 2.2131 17 7 1.7219 -4.4339 2.0526 18 6 2.0246 -5.3462 3.0646 19 6 2.6538 -4.9207 4.2211 20 6 2.9556 -5.8265 5.2272 21 6 2.6353 -7.1599 5.0937 22 6 2.0020 -7.6128 3.9397 23 6 1.6934 -6.7002 2.9166 24 6 1.0442 -7.4789 1.8595 25 6 0.9985 -8.7520 2.2819 26 7 1.5667 -8.8513 3.5241 27 6 1.6932 -10.0903 4.2954 28 1 -0.3633 0.4513 0.9234 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 1.5612 1.9273 0.8310 32 1 3.0798 1.3444 0.1082 33 1 2.9860 4.9182 -0.7766 34 1 1.5612 -0.3873 2.0627 35 1 3.0798 -0.6612 1.1756 36 1 3.2601 -2.7167 -0.1361 37 1 1.5634 -2.6179 3.0905 38 1 3.1482 -2.9237 2.3401 39 1 1.2805 -4.7360 1.2434 40 1 2.9118 -3.8788 4.3406 41 1 3.4472 -5.4827 6.1254 42 1 2.8801 -7.8552 5.8830 43 1 0.6727 -7.1004 0.9187 44 1 0.5765 -9.5755 1.7251 45 1 2.6398 -10.5739 4.0536 46 1 1.6646 -9.8600 5.3603 47 1 0.8695 -10.7592 4.0460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571910419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:59 Heat of formation + Delta-G solvation = -1.841461 kcal Electronic energy + Delta-G solvation = -25599.604345 eV Core-core repulsion = 21974.897524 eV Total energy + Delta-G solvation = -3624.706821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.07430 -39.79381 -38.43201 -37.14888 -35.52837 -34.62826 -33.46154 -31.54871 -30.11130 -29.53735 -28.71552 -27.32357 -27.00294 -25.39894 -23.25776 -23.09185 -22.07504 -21.82948 -20.64057 -18.58002 -18.54520 -17.51853 -17.23453 -17.05141 -16.71717 -16.49800 -16.14211 -16.13176 -15.85961 -15.47580 -15.24218 -14.94522 -14.46686 -14.27758 -14.11162 -14.05618 -13.80583 -13.46840 -13.43608 -13.23598 -13.04338 -12.81659 -12.62648 -12.55456 -12.42478 -12.31685 -12.15849 -12.02920 -12.00993 -11.65376 -11.40564 -11.10292 -10.81876 -10.62715 -9.48316 -9.05981 -8.97442 -8.21217 -7.80826 -6.30810 0.49053 0.82380 1.40570 1.41386 1.55150 1.90223 2.02595 2.38329 2.46705 3.10723 3.11195 3.25740 3.60061 3.86760 3.96502 3.99513 4.03399 4.06756 4.19454 4.34288 4.42051 4.43599 4.50207 4.53075 4.62649 4.65817 4.72198 4.73940 4.75434 4.80949 4.91637 5.04864 5.10144 5.12022 5.13729 5.17546 5.31046 5.46993 5.64679 5.77477 5.79674 5.91056 6.04493 6.24995 6.30654 6.52170 6.56230 6.62712 6.82234 6.85424 6.92187 7.38866 8.89893 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.034075 B = 0.002046 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.511111 B =13682.413059 C =14236.743807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.540 5.540 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.026 3.974 13 C 0.120 3.880 14 H 0.099 0.901 15 O -0.558 6.558 16 C 0.104 3.896 17 N -0.731 5.731 18 C 0.253 3.747 19 C -0.260 4.260 20 C -0.051 4.051 21 C -0.205 4.205 22 C 0.119 3.881 23 C -0.199 4.199 24 C -0.216 4.216 25 C 0.039 3.961 26 N -0.493 5.493 27 C 0.074 3.926 28 H 0.013 0.987 29 H 0.055 0.945 30 H 0.076 0.924 31 H -0.037 1.037 32 H 0.006 0.994 33 H 0.264 0.736 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.383 0.617 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.403 0.597 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.130 0.870 43 H 0.147 0.853 44 H 0.199 0.801 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.096 -28.747 11.918 31.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.264 5.264 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.204 1.204 12 C -0.103 4.103 13 C 0.059 3.941 14 H 0.117 0.883 15 O -0.364 6.364 16 C -0.021 4.021 17 N -0.359 5.359 18 C 0.148 3.852 19 C -0.285 4.285 20 C -0.071 4.071 21 C -0.228 4.228 22 C 0.010 3.990 23 C -0.207 4.207 24 C -0.241 4.241 25 C -0.086 4.086 26 N -0.176 5.176 27 C -0.066 4.066 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.095 0.905 31 H -0.020 1.020 32 H 0.024 0.976 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.231 0.769 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.238 0.762 40 H 0.142 0.858 41 H 0.160 0.840 42 H 0.148 0.852 43 H 0.164 0.836 44 H 0.215 0.785 45 H 0.094 0.906 46 H 0.104 0.896 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.409 -29.049 11.505 31.337 hybrid contribution 0.143 1.469 0.004 1.475 sum -2.267 -27.581 11.509 29.971 Atomic orbital electron populations 1.22252 0.87865 1.01099 0.99786 1.61930 1.07956 1.14981 1.41553 1.19401 0.93746 0.83821 0.94936 1.21502 1.34706 0.97462 1.02426 0.92090 1.25914 0.95076 0.98086 1.00710 1.70086 1.39422 1.11867 1.36092 0.85329 0.78078 0.78157 0.79014 1.18892 1.20359 1.20362 1.22752 1.00681 0.94521 0.92350 1.21924 0.97850 0.89644 0.84635 0.88321 1.86548 1.24491 1.83706 1.41697 1.21920 1.00826 0.81183 0.98196 1.44466 1.66057 1.05811 1.19521 1.17442 0.92070 0.87043 0.88671 1.20517 1.11816 1.00687 0.95438 1.20779 0.96489 0.91750 0.98094 1.19938 1.08954 0.96667 0.97216 1.18287 0.99821 0.84971 0.95881 1.18986 1.11135 0.92171 0.98379 1.21748 1.08946 0.93199 1.00173 1.22206 1.01099 0.98884 0.86413 1.44135 1.50539 1.06802 1.16145 1.22162 1.04241 0.83569 0.96657 0.96893 0.92622 0.90526 1.01968 0.97633 0.92684 0.94400 0.90878 0.76899 0.90911 0.91203 0.76182 0.85832 0.83957 0.85163 0.83568 0.78455 0.90564 0.89625 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.48 9.14 127.69 1.17 2.65 16 2 N -0.54 -23.21 4.70 -927.04 -4.36 -27.57 16 3 C 0.21 11.08 4.72 85.55 0.40 11.49 16 4 C -0.52 -30.03 8.46 25.60 0.22 -29.81 16 5 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 6 C 0.00 0.00 5.46 84.65 0.46 0.46 16 7 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 8 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 9 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.03 0.87 4.60 86.30 0.40 1.27 16 13 C 0.12 3.17 3.01 30.60 0.09 3.26 16 14 H 0.10 2.68 6.33 -2.39 -0.02 2.67 16 15 O -0.56 -16.01 13.03 -148.98 -1.94 -17.95 16 16 C 0.10 2.32 4.58 86.38 0.40 2.72 16 17 N -0.73 -17.11 5.62 -338.88 -1.91 -19.02 16 18 C 0.25 6.40 6.68 38.41 0.26 6.65 16 19 C -0.26 -6.08 9.31 22.41 0.21 -5.87 16 20 C -0.05 -1.05 10.00 22.27 0.22 -0.82 16 21 C -0.20 -4.15 9.94 22.40 0.22 -3.92 16 22 C 0.12 2.68 6.80 39.01 0.27 2.94 16 23 C -0.20 -4.99 6.27 -20.11 -0.13 -5.12 16 24 C -0.22 -4.57 10.86 23.50 0.26 -4.31 16 25 C 0.04 0.63 11.29 82.97 0.94 1.56 16 26 N -0.49 -8.38 3.18 -539.23 -1.72 -10.10 16 27 C 0.07 0.60 11.03 127.77 1.41 2.00 16 28 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.05 2.36 6.76 -2.39 -0.02 2.35 16 30 H 0.08 2.49 6.37 -2.39 -0.02 2.47 16 31 H -0.04 -2.16 8.12 -2.38 -0.02 -2.18 16 32 H 0.01 0.32 7.93 -2.39 -0.02 0.30 16 33 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.04 1.22 8.12 -2.39 -0.02 1.20 16 35 H 0.07 2.42 7.93 -2.38 -0.02 2.40 16 36 H 0.38 9.14 9.05 -74.06 -0.67 8.47 16 37 H 0.07 1.56 7.95 -2.39 -0.02 1.55 16 38 H 0.07 1.49 7.95 -2.39 -0.02 1.47 16 39 H 0.40 9.45 8.18 -92.71 -0.76 8.70 16 40 H 0.12 2.66 6.72 -2.91 -0.02 2.64 16 41 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 42 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 44 H 0.20 1.62 8.06 -2.91 -0.02 1.59 16 45 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 46 H 0.09 0.58 8.10 -2.39 -0.02 0.57 16 47 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -72.35 384.43 -1.28 -73.62 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.45 Total: 25.19 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 6.79 Total: -14.85 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -7.70 Total: -112.84 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.94 Total: -17.95 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -72.35 -1.28 -73.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571910419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.781 kcal (2) G-P(sol) polarization free energy of solvation -72.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds