Wall clock time and date at job start Tue Mar 31 2020 11:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46493 * 120.00028 * 2 1 4 4 C 1.38456 * 119.99768 * 180.02562 * 2 1 3 5 5 C 1.39394 * 119.54331 * 4.99571 * 4 2 1 6 6 C 1.36857 * 119.38233 * 179.97438 * 5 4 2 7 7 C 1.40352 * 118.49133 * 359.97438 * 6 5 4 8 8 C 1.47535 * 120.47274 * 180.02562 * 7 6 5 9 9 O 1.21590 * 120.00211 * 50.49379 * 8 7 6 10 10 N 1.34781 * 120.00088 * 230.49115 * 8 7 6 11 11 C 1.46925 * 120.62884 * 176.18299 * 10 8 7 12 12 C 1.53198 * 108.88905 * 233.67896 * 11 10 8 13 13 C 1.53038 * 109.31516 * 305.29529 * 12 11 10 14 14 C 1.53000 * 109.46234 * 181.38815 * 13 12 11 15 15 C 1.50703 * 109.47139 * 175.00128 * 14 13 12 16 16 H 1.07997 * 119.99980 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99830 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99966 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99888 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47132 * 60.00245 * 19 17 15 21 21 H 1.48505 * 109.47118 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47312 * 300.00047 * 19 17 15 23 23 C 1.53041 * 109.53954 * 61.36302 * 13 12 11 24 24 C 1.47210 * 120.81323 * 356.32594 * 10 8 7 25 25 C 1.39552 * 119.04814 * 0.28377 * 7 6 5 26 26 N 1.31674 * 120.52104 * 359.42206 * 25 7 6 27 27 H 1.08998 * 109.46559 * 269.99812 * 1 2 3 28 28 H 1.08998 * 109.47434 * 29.99556 * 1 2 3 29 29 H 1.09000 * 109.47450 * 149.99987 * 1 2 3 30 30 H 1.09007 * 109.47546 * 270.00397 * 3 2 1 31 31 H 1.09000 * 109.47188 * 30.00340 * 3 2 1 32 32 H 1.09000 * 109.47233 * 150.00495 * 3 2 1 33 33 H 1.08006 * 120.30925 * 359.95803 * 5 4 2 34 34 H 1.08001 * 120.75457 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.58836 * 113.82922 * 11 10 8 36 36 H 1.08997 * 109.59063 * 353.53626 * 11 10 8 37 37 H 1.08997 * 109.49741 * 65.24979 * 12 11 10 38 38 H 1.08999 * 109.49378 * 185.31267 * 12 11 10 39 39 H 1.09002 * 109.46141 * 301.35801 * 13 12 11 40 40 H 1.09004 * 109.46614 * 294.99541 * 14 13 12 41 41 H 1.08994 * 109.46926 * 55.00028 * 14 13 12 42 42 H 0.97002 * 119.99845 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.49516 * 58.58485 * 23 13 12 44 44 H 1.09001 * 109.49938 * 178.68349 * 23 13 12 45 45 H 1.09000 * 109.53030 * 6.53017 * 24 10 8 46 46 H 1.08999 * 109.67751 * 246.22890 * 24 10 8 47 47 H 1.08006 * 119.74003 * 179.72421 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1573 -1.1991 -0.0005 5 6 1.4546 -2.3983 -0.1067 6 6 2.1422 -3.5816 -0.1074 7 6 3.5412 -3.5431 -0.0009 8 6 4.3260 -4.7924 0.0022 9 8 4.1450 -5.6262 -0.8641 10 7 5.2436 -5.0095 0.9652 11 6 5.9734 -6.2830 1.0304 12 6 5.8157 -6.8736 2.4351 13 6 6.2650 -5.8413 3.4717 14 6 6.1415 -6.4402 4.8742 15 6 6.6980 -5.4709 5.8851 16 1 7.1000 -4.5228 5.5597 17 6 6.6940 -5.7945 7.2253 18 7 6.2050 -6.9493 7.6215 19 14 7.3845 -4.5934 8.4782 20 1 6.6236 -3.3197 8.4145 21 1 7.2634 -5.1741 9.8397 22 1 8.8147 -4.3312 8.1768 23 6 5.3818 -4.5956 3.3696 24 6 5.5346 -3.9791 1.9756 25 6 4.1787 -2.3065 0.1076 26 7 3.4796 -1.1907 0.0986 27 1 -0.3632 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 2.3792 1.5834 -1.0277 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 0.3776 -2.3937 -0.1873 34 1 1.6203 -4.5236 -0.1889 35 1 7.0295 -6.1100 0.8233 36 1 5.5655 -6.9761 0.2947 37 1 4.7703 -7.1303 2.6066 38 1 6.4296 -7.7699 2.5238 39 1 7.3030 -5.5666 3.2843 40 1 5.0918 -6.6332 5.0956 41 1 6.7006 -7.3746 4.9207 42 1 6.2025 -7.1771 8.5643 43 1 4.3405 -4.8737 3.5322 44 1 5.6873 -3.8702 4.1236 45 1 4.8348 -3.1510 1.8635 46 1 6.5541 -3.6159 1.8463 47 1 5.2544 -2.2640 0.1946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583086322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:14 Heat of formation + Delta-G solvation = 7.685755 kcal Electronic energy + Delta-G solvation = -26559.588058 eV Core-core repulsion = 22935.294368 eV Total energy + Delta-G solvation = -3624.293690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.89966 -39.53093 -37.32676 -36.67900 -33.99656 -32.78254 -32.25939 -31.29265 -30.15716 -28.59567 -28.05184 -26.09505 -24.57387 -23.64230 -22.75791 -22.42337 -21.41232 -20.00325 -18.89700 -17.73469 -17.41649 -16.70595 -16.30213 -15.87917 -15.61804 -14.99212 -14.93617 -14.56984 -14.54525 -14.03265 -13.71180 -13.60607 -13.34179 -13.19539 -12.97070 -12.90106 -12.73986 -12.58271 -12.44959 -12.20969 -12.14861 -11.77731 -11.17804 -10.99779 -10.79116 -10.68788 -10.47881 -10.33519 -10.13665 -10.01497 -9.91892 -9.61998 -9.43017 -9.23605 -8.97477 -8.36482 -8.33568 -7.80610 -5.99792 -4.01830 0.89657 1.19167 2.58466 2.80059 3.17997 3.32082 3.37191 3.38859 3.73226 4.20174 4.45184 4.55538 4.63524 4.72911 4.84383 4.89036 5.01749 5.05860 5.17683 5.27136 5.31242 5.35136 5.41682 5.50042 5.51347 5.53283 5.59227 5.70353 5.73576 5.80159 5.98434 6.05091 6.09181 6.25348 6.38792 6.41585 6.53714 6.55344 6.70698 6.97296 7.00702 7.01370 7.11850 7.57804 7.66962 7.81959 7.85019 7.99984 8.29331 8.42304 9.04528 9.61907 11.11455 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.003218 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.155502 B = 8699.368011 C =10190.808467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.613 5.613 3 C 0.096 3.904 4 C 0.414 3.586 5 C -0.244 4.244 6 C 0.016 3.984 7 C -0.238 4.238 8 C 0.570 3.430 9 O -0.549 6.549 10 N -0.599 5.599 11 C 0.113 3.887 12 C -0.129 4.129 13 C -0.081 4.081 14 C 0.028 3.972 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.118 4.118 24 C 0.096 3.904 25 C 0.185 3.815 26 N -0.543 5.543 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.811 13.351 -16.541 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.326 5.326 3 C -0.047 4.047 4 C 0.179 3.821 5 C -0.268 4.268 6 C -0.010 4.010 7 C -0.246 4.246 8 C 0.358 3.642 9 O -0.428 6.428 10 N -0.331 5.331 11 C -0.009 4.009 12 C -0.167 4.167 13 C -0.099 4.099 14 C -0.009 4.009 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.156 4.156 24 C -0.026 4.026 25 C 0.026 3.974 26 N -0.261 5.261 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.625 13.790 -16.768 23.748 hybrid contribution -0.079 -0.120 0.916 0.927 sum -9.704 13.670 -15.852 23.072 Atomic orbital electron populations 1.21775 0.78285 1.03187 1.01905 1.46149 1.05338 1.03311 1.77776 1.21617 0.97925 0.83741 1.01391 1.18454 0.88558 0.85944 0.89104 1.21096 1.01241 0.91475 1.12991 1.21007 0.92163 0.98430 0.89403 1.20540 0.95165 0.94841 1.14042 1.18001 0.79135 0.85868 0.81198 1.90752 1.67904 1.46854 1.37275 1.48161 1.39179 1.17234 1.28497 1.21684 0.95753 0.84679 0.98806 1.22028 1.01982 0.99238 0.93480 1.21196 0.97856 0.93668 0.97214 1.19116 0.97134 0.95893 0.88749 1.21205 1.39834 1.02973 0.91495 0.92639 1.25018 0.95554 0.95219 0.98653 1.69953 1.46122 1.21623 1.15809 0.86711 0.79616 0.81370 0.80614 1.20294 1.21380 1.20269 1.21885 1.00649 0.99053 0.93974 1.22232 1.00984 0.90379 0.89042 1.22666 0.99638 0.85746 0.89363 1.67229 1.05930 1.31127 1.21765 0.92586 0.90885 0.90823 0.93341 0.91767 0.89867 0.84495 0.84384 0.91667 0.89642 0.92101 0.91048 0.92284 0.96681 0.96590 0.92999 0.92341 0.89719 0.90099 0.91208 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 10.27 59.85 0.61 1.13 16 2 N -0.61 -5.49 3.37 -189.70 -0.64 -6.13 16 3 C 0.10 0.72 10.49 59.84 0.63 1.35 16 4 C 0.41 4.73 7.36 -155.28 -1.14 3.58 16 5 C -0.24 -2.57 9.20 -39.65 -0.36 -2.93 16 6 C 0.02 0.19 9.83 -39.29 -0.39 -0.19 16 7 C -0.24 -3.22 5.03 -104.82 -0.53 -3.75 16 8 C 0.57 8.96 7.25 -12.47 -0.09 8.87 16 9 O -0.55 -10.21 16.48 5.29 0.09 -10.12 16 10 N -0.60 -9.00 2.98 -173.77 -0.52 -9.51 16 11 C 0.11 1.70 6.41 -3.71 -0.02 1.67 16 12 C -0.13 -2.18 5.36 -26.61 -0.14 -2.32 16 13 C -0.08 -1.55 2.10 -90.58 -0.19 -1.74 16 14 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 15 C -0.52 -13.98 8.39 -34.44 -0.29 -14.27 16 16 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.12 -2.05 5.19 -26.61 -0.14 -2.19 16 24 C 0.10 1.35 5.38 -3.56 -0.02 1.33 16 25 C 0.18 2.30 8.54 -17.13 -0.15 2.15 16 26 N -0.54 -6.81 9.04 -12.14 -0.11 -6.92 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 29 H 0.07 0.36 5.95 -51.93 -0.31 0.05 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 32 H 0.08 0.74 7.28 -51.93 -0.38 0.36 16 33 H 0.14 1.07 5.99 -52.48 -0.31 0.75 16 34 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.32 7.02 -51.93 -0.36 0.95 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.57 6.91 -51.93 -0.36 1.21 16 45 H 0.08 1.05 4.56 -51.93 -0.24 0.82 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.16 1.74 7.04 -52.48 -0.37 1.37 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -33.05 372.47 -9.62 -42.67 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.32 Total: -0.72 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -2.44 Total: -5.25 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.53 Total: -48.44 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.05 -9.62 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583086322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.355 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds