Wall clock time and date at job start Tue Mar 31 2020 11:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46493 * 120.00028 * 2 1 4 4 C 1.38456 * 119.99768 * 180.02562 * 2 1 3 5 5 C 1.39394 * 119.54331 * 4.99571 * 4 2 1 6 6 C 1.36857 * 119.38233 * 179.97438 * 5 4 2 7 7 C 1.40352 * 118.49133 * 359.97438 * 6 5 4 8 8 C 1.47535 * 120.47274 * 180.02562 * 7 6 5 9 9 O 1.21590 * 120.00211 * 50.49379 * 8 7 6 10 10 N 1.34781 * 120.00088 * 230.49115 * 8 7 6 11 11 C 1.46925 * 120.62884 * 176.18299 * 10 8 7 12 12 C 1.53198 * 108.88905 * 233.67896 * 11 10 8 13 13 C 1.53038 * 109.31516 * 305.29529 * 12 11 10 14 14 C 1.53000 * 109.46234 * 181.38815 * 13 12 11 15 15 C 1.50703 * 109.47139 * 175.00128 * 14 13 12 16 16 H 1.07997 * 119.99980 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99830 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99966 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99888 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47132 * 60.00245 * 19 17 15 21 21 H 1.48505 * 109.47118 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47312 * 300.00047 * 19 17 15 23 23 C 1.53041 * 109.53954 * 61.36302 * 13 12 11 24 24 C 1.47210 * 120.81323 * 356.32594 * 10 8 7 25 25 C 1.39552 * 119.04814 * 0.28377 * 7 6 5 26 26 N 1.31674 * 120.52104 * 359.42206 * 25 7 6 27 27 H 1.08998 * 109.46559 * 269.99812 * 1 2 3 28 28 H 1.08998 * 109.47434 * 29.99556 * 1 2 3 29 29 H 1.09000 * 109.47450 * 149.99987 * 1 2 3 30 30 H 1.09007 * 109.47546 * 270.00397 * 3 2 1 31 31 H 1.09000 * 109.47188 * 30.00340 * 3 2 1 32 32 H 1.09000 * 109.47233 * 150.00495 * 3 2 1 33 33 H 1.08006 * 120.30925 * 359.95803 * 5 4 2 34 34 H 1.08001 * 120.75457 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.58836 * 113.82922 * 11 10 8 36 36 H 1.08997 * 109.59063 * 353.53626 * 11 10 8 37 37 H 1.08997 * 109.49741 * 65.24979 * 12 11 10 38 38 H 1.08999 * 109.49378 * 185.31267 * 12 11 10 39 39 H 1.09002 * 109.46141 * 301.35801 * 13 12 11 40 40 H 1.09004 * 109.46614 * 294.99541 * 14 13 12 41 41 H 1.08994 * 109.46926 * 55.00028 * 14 13 12 42 42 H 0.97002 * 119.99845 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.49516 * 58.58485 * 23 13 12 44 44 H 1.09001 * 109.49938 * 178.68349 * 23 13 12 45 45 H 1.09000 * 109.53030 * 6.53017 * 24 10 8 46 46 H 1.08999 * 109.67751 * 246.22890 * 24 10 8 47 47 H 1.08006 * 119.74003 * 179.72421 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1573 -1.1991 -0.0005 5 6 1.4546 -2.3983 -0.1067 6 6 2.1422 -3.5816 -0.1074 7 6 3.5412 -3.5431 -0.0009 8 6 4.3260 -4.7924 0.0022 9 8 4.1450 -5.6262 -0.8641 10 7 5.2436 -5.0095 0.9652 11 6 5.9734 -6.2830 1.0304 12 6 5.8157 -6.8736 2.4351 13 6 6.2650 -5.8413 3.4717 14 6 6.1415 -6.4402 4.8742 15 6 6.6980 -5.4709 5.8851 16 1 7.1000 -4.5228 5.5597 17 6 6.6940 -5.7945 7.2253 18 7 6.2050 -6.9493 7.6215 19 14 7.3845 -4.5934 8.4782 20 1 6.6236 -3.3197 8.4145 21 1 7.2634 -5.1741 9.8397 22 1 8.8147 -4.3312 8.1768 23 6 5.3818 -4.5956 3.3696 24 6 5.5346 -3.9791 1.9756 25 6 4.1787 -2.3065 0.1076 26 7 3.4796 -1.1907 0.0986 27 1 -0.3632 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 2.3792 1.5834 -1.0277 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 0.3776 -2.3937 -0.1873 34 1 1.6203 -4.5236 -0.1889 35 1 7.0295 -6.1100 0.8233 36 1 5.5655 -6.9761 0.2947 37 1 4.7703 -7.1303 2.6066 38 1 6.4296 -7.7699 2.5238 39 1 7.3030 -5.5666 3.2843 40 1 5.0918 -6.6332 5.0956 41 1 6.7006 -7.3746 4.9207 42 1 6.2025 -7.1771 8.5643 43 1 4.3405 -4.8737 3.5322 44 1 5.6873 -3.8702 4.1236 45 1 4.8348 -3.1510 1.8635 46 1 6.5541 -3.6159 1.8463 47 1 5.2544 -2.2640 0.1946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583086322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:14 Heat of formation + Delta-G solvation = -11.134656 kcal Electronic energy + Delta-G solvation = -26560.404172 eV Core-core repulsion = 22935.294368 eV Total energy + Delta-G solvation = -3625.109804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.88571 -40.62340 -38.69032 -37.45740 -35.68795 -34.04722 -33.65256 -32.51704 -31.23531 -29.78039 -29.13110 -27.12078 -26.05048 -24.67205 -23.98945 -23.68721 -22.59375 -21.37653 -20.20753 -18.65135 -18.39848 -18.35637 -17.64055 -17.06612 -16.53081 -16.33317 -16.05608 -15.79024 -15.43564 -15.17717 -15.11409 -14.81329 -14.43410 -14.37791 -14.19938 -14.09804 -13.91188 -13.54712 -13.36342 -13.31851 -13.03192 -12.96353 -12.79284 -12.70149 -12.48060 -12.32364 -12.12863 -11.77512 -11.38772 -11.28964 -11.12624 -10.97469 -10.84071 -10.68068 -10.49520 -10.42311 -9.63856 -8.56936 -8.14915 -6.24400 -0.02205 0.31284 1.42449 1.44750 1.52140 1.62860 1.92152 2.05121 2.43995 2.81821 3.18785 3.38951 3.54760 3.84317 3.90737 3.95169 4.04985 4.12275 4.14213 4.21320 4.32893 4.41493 4.46319 4.52266 4.54841 4.65651 4.69346 4.79949 4.81901 4.86599 4.90449 4.93863 4.96605 4.99903 5.08091 5.18395 5.32779 5.34665 5.39770 5.42157 5.55055 5.60171 5.83018 5.91047 5.91294 6.25952 6.30196 6.38766 6.92408 6.99458 7.10202 7.44297 8.96934 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.003218 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.155502 B = 8699.368011 C =10190.808467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.613 5.613 3 C 0.093 3.907 4 C 0.404 3.596 5 C -0.239 4.239 6 C 0.006 3.994 7 C -0.260 4.260 8 C 0.572 3.428 9 O -0.584 6.584 10 N -0.599 5.599 11 C 0.119 3.881 12 C -0.121 4.121 13 C -0.072 4.072 14 C 0.033 3.967 15 C -0.527 4.527 16 H 0.068 0.932 17 C -0.004 4.004 18 N -0.938 5.938 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.112 4.112 24 C 0.108 3.892 25 C 0.187 3.813 26 N -0.558 5.558 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.165 0.835 34 H 0.141 0.859 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.067 0.933 40 H -0.017 1.017 41 H -0.013 1.013 42 H 0.261 0.739 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.027 16.183 -17.301 25.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.324 5.324 3 C -0.050 4.050 4 C 0.168 3.832 5 C -0.263 4.263 6 C -0.020 4.020 7 C -0.269 4.269 8 C 0.362 3.638 9 O -0.465 6.465 10 N -0.331 5.331 11 C -0.003 4.003 12 C -0.160 4.160 13 C -0.091 4.091 14 C -0.004 4.004 15 C -0.565 4.565 16 H 0.086 0.914 17 C -0.201 4.201 18 N -0.579 5.579 19 Si 0.784 3.216 20 H -0.191 1.191 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.150 4.150 24 C -0.014 4.014 25 C 0.028 3.972 26 N -0.276 5.276 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.182 0.818 34 H 0.159 0.841 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.001 0.999 41 H 0.006 0.994 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.093 0.907 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.859 16.669 -17.533 26.124 hybrid contribution -0.111 -0.955 1.152 1.500 sum -9.970 15.714 -16.382 24.793 Atomic orbital electron populations 1.22031 0.76281 1.04734 1.02781 1.46515 1.06700 1.02907 1.76260 1.21713 0.97656 0.83715 1.01875 1.18816 0.88554 0.87206 0.88609 1.21330 1.02536 0.90558 1.11897 1.21162 0.91914 0.99319 0.89600 1.20439 0.95636 0.94174 1.16645 1.18315 0.78721 0.86191 0.80592 1.90725 1.68820 1.48307 1.38650 1.48218 1.39065 1.17292 1.28493 1.21615 0.97000 0.84782 0.96925 1.21912 1.00944 0.98908 0.94188 1.21041 0.98880 0.94814 0.94357 1.19010 0.94355 0.94843 0.92186 1.21653 1.39163 1.03570 0.92115 0.91429 1.25964 0.95992 0.96991 1.01111 1.70108 1.47782 1.23801 1.16195 0.85584 0.79339 0.79110 0.77535 1.19087 1.21499 1.19071 1.21762 0.99020 0.97996 0.96208 1.22193 1.02856 0.90038 0.86342 1.22826 1.00285 0.85306 0.88832 1.67289 1.06695 1.31007 1.22639 0.91953 0.88693 0.90027 0.92777 0.89393 0.91473 0.81792 0.84127 0.89534 0.89939 0.93678 0.90676 0.91485 0.99897 0.99441 0.93075 0.94055 0.90663 0.88657 0.88790 0.80769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.27 127.77 1.31 1.98 16 2 N -0.61 -9.41 3.37 -754.09 -2.54 -11.95 16 3 C 0.09 1.18 10.49 127.77 1.34 2.52 16 4 C 0.40 8.46 7.36 133.25 0.98 9.44 16 5 C -0.24 -4.61 9.20 22.22 0.20 -4.40 16 6 C 0.01 0.14 9.83 22.46 0.22 0.36 16 7 C -0.26 -6.86 5.03 -19.99 -0.10 -6.96 16 8 C 0.57 17.71 7.25 86.69 0.63 18.34 16 9 O -0.58 -21.74 16.48 -4.00 -0.07 -21.80 16 10 N -0.60 -17.40 2.98 -821.94 -2.45 -19.85 16 11 C 0.12 3.47 6.41 86.36 0.55 4.02 16 12 C -0.12 -4.12 5.36 30.67 0.16 -3.96 16 13 C -0.07 -2.79 2.10 -10.77 -0.02 -2.82 16 14 C 0.03 1.70 4.45 29.85 0.13 1.83 16 15 C -0.53 -28.77 8.39 25.60 0.21 -28.56 16 16 H 0.07 3.45 7.06 -2.91 -0.02 3.43 16 17 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 18 N -0.94 -57.16 13.29 21.45 0.28 -56.87 16 19 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 C -0.11 -3.86 5.19 30.67 0.16 -3.70 16 24 C 0.11 2.84 5.38 86.31 0.46 3.31 16 25 C 0.19 4.38 8.54 85.03 0.73 5.11 16 26 N -0.56 -13.15 9.04 -192.33 -1.74 -14.89 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.09 0.38 8.07 -2.39 -0.02 0.36 16 29 H 0.08 0.54 5.95 -2.39 -0.01 0.52 16 30 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.09 0.69 8.07 -2.39 -0.02 0.67 16 32 H 0.07 1.09 7.28 -2.39 -0.02 1.07 16 33 H 0.16 2.12 5.99 -2.91 -0.02 2.10 16 34 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.08 2.51 7.02 -2.39 -0.02 2.49 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 40 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 41 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 42 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 2.74 6.91 -2.39 -0.02 2.73 16 45 H 0.10 2.31 4.56 -2.39 -0.01 2.30 16 46 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.18 3.43 7.04 -2.91 -0.02 3.41 16 Total: -1.00 -72.83 372.47 3.91 -68.92 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.96 Total: 14.08 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 7.44 Total: -3.21 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -6.45 Total: -103.57 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.07 Total: -21.80 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -72.83 3.91 -68.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583086322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.788 kcal (2) G-P(sol) polarization free energy of solvation -72.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds