Wall clock time and date at job start Tue Mar 31 2020 11:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34940 * 126.03757 * 2 1 4 4 C 1.35317 * 107.74438 * 179.77616 * 3 2 1 5 5 C 1.50703 * 126.04130 * 180.25149 * 4 3 2 6 6 H 1.09005 * 115.54521 * 334.33527 * 5 4 3 7 7 C 1.52994 * 117.50272 * 188.62199 * 5 4 3 8 8 C 1.52995 * 60.00192 * 252.51251 * 7 5 4 9 9 H 1.08994 * 117.51843 * 107.48202 * 8 7 5 10 10 C 1.50706 * 117.49791 * 252.51172 * 8 7 5 11 11 O 1.21277 * 120.00200 * 68.61779 * 10 8 7 12 12 N 1.34780 * 119.99739 * 248.62610 * 10 8 7 13 13 C 1.46921 * 120.63095 * 359.71177 * 12 10 8 14 14 C 1.52761 * 109.00764 * 233.58971 * 13 12 10 15 15 C 1.53036 * 109.38225 * 305.58631 * 14 13 12 16 16 C 1.53006 * 109.45884 * 181.26256 * 15 14 13 17 17 C 1.50696 * 109.47163 * 64.93522 * 16 15 14 18 18 H 1.08003 * 120.00102 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99824 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00408 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99857 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47123 * 59.99652 * 21 19 17 23 23 H 1.48501 * 109.47263 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46916 * 299.99756 * 21 19 17 25 25 C 1.53041 * 109.53644 * 61.24448 * 15 14 13 26 26 C 1.46919 * 120.62650 * 179.97438 * 12 10 8 27 27 C 1.39872 * 107.92021 * 0.23195 * 4 3 2 28 28 N 1.30838 * 108.20312 * 359.97438 * 27 4 3 29 29 H 1.08998 * 109.47306 * 89.99468 * 1 2 3 30 30 H 1.09006 * 109.46968 * 209.99780 * 1 2 3 31 31 H 1.08996 * 109.46982 * 329.98985 * 1 2 3 32 32 H 1.08002 * 126.13053 * 0.04913 * 3 2 1 33 33 H 1.09003 * 117.49437 * 0.02562 * 7 5 4 34 34 H 1.09003 * 117.50061 * 145.01798 * 7 5 4 35 35 H 1.08999 * 109.58475 * 353.42585 * 13 12 10 36 36 H 1.08997 * 109.58805 * 113.84972 * 13 12 10 37 37 H 1.09008 * 109.56404 * 185.55620 * 14 13 12 38 38 H 1.08993 * 109.39125 * 65.52093 * 14 13 12 39 39 H 1.09000 * 109.45666 * 301.23257 * 15 14 13 40 40 H 1.09003 * 109.47125 * 184.93859 * 16 15 14 41 41 H 1.08998 * 109.46892 * 304.93299 * 16 15 14 42 42 H 0.96998 * 120.00235 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.49947 * 178.67973 * 25 15 14 44 44 H 1.08997 * 109.49718 * 58.58479 * 25 15 14 45 45 H 1.09000 * 109.59014 * 246.14938 * 26 12 10 46 46 H 1.09000 * 109.59256 * 6.57808 * 26 12 10 47 47 H 1.08001 * 125.89461 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6664 0.0050 5 6 4.7680 1.5451 0.0122 6 1 4.6350 2.5402 -0.4125 7 6 6.1252 0.8674 -0.1863 8 6 5.7323 1.4035 1.1917 9 1 5.4810 0.6751 1.9625 10 6 6.4259 2.6504 1.6769 11 8 6.2104 3.7140 1.1354 12 7 7.2858 2.5834 2.7126 13 6 7.5524 1.3034 3.3826 14 6 7.3124 1.4674 4.8824 15 6 8.1489 2.6372 5.4056 16 6 7.9340 2.7832 6.9134 17 6 8.4685 1.5628 7.6175 18 1 8.9170 0.7631 7.0467 19 6 8.3859 1.4675 8.9905 20 7 7.8402 2.4414 9.6856 21 14 9.0490 -0.0451 9.8633 22 1 10.5003 -0.1832 9.5807 23 1 8.8404 0.0965 11.3267 24 1 8.3329 -1.2514 9.3762 25 6 7.7208 3.9273 4.7023 26 6 7.9700 3.7901 3.1966 27 6 3.5346 -0.7322 0.0028 28 7 2.2891 -1.1329 -0.0027 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.9282 2.1193 0.0007 33 1 6.1325 -0.2141 -0.3226 34 1 6.8855 1.4164 -0.7420 35 1 6.8835 0.5383 2.9884 36 1 8.5880 1.0098 3.2111 37 1 7.6018 0.5529 5.4005 38 1 6.2559 1.6673 5.0600 39 1 9.2035 2.4476 5.2057 40 1 8.4597 3.6686 7.2713 41 1 6.8687 2.8848 7.1204 42 1 7.7818 2.3742 10.6515 43 1 8.3007 4.7639 5.0922 44 1 6.6603 4.1045 4.8811 45 1 9.0403 3.7032 3.0096 46 1 7.5766 4.6655 2.6798 47 1 4.4054 -1.3711 0.0061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583324016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:05 Heat of formation + Delta-G solvation = 55.670884 kcal Electronic energy + Delta-G solvation = -26087.131068 eV Core-core repulsion = 22464.918170 eV Total energy + Delta-G solvation = -3622.212898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51304 -40.12041 -37.78033 -36.36040 -33.96887 -33.28720 -32.12652 -30.87031 -30.32280 -28.13519 -27.11167 -25.25384 -23.71711 -23.14045 -22.71630 -21.44127 -21.23934 -20.08822 -19.52541 -18.51945 -17.49367 -16.77833 -16.29691 -15.85926 -15.62858 -15.15417 -14.65132 -14.55400 -14.44860 -14.04915 -13.67231 -13.52212 -13.28113 -13.09581 -13.00939 -12.79803 -12.69273 -12.45413 -12.13554 -12.04562 -11.80823 -11.17895 -11.03491 -10.98596 -10.78428 -10.74301 -10.68762 -10.56527 -10.44141 -10.12134 -9.75397 -9.67347 -9.52740 -9.24510 -8.97818 -8.46622 -8.36000 -8.30503 -6.00307 -4.02473 1.61720 2.25459 2.36937 2.71978 3.18343 3.31636 3.36864 3.38352 3.89093 4.19153 4.44619 4.53833 4.59142 4.70632 4.75855 4.79974 4.92157 5.02293 5.05312 5.17889 5.24813 5.34755 5.40484 5.42931 5.50442 5.54268 5.56525 5.71955 5.79853 5.81983 5.88655 6.01502 6.09849 6.12621 6.37917 6.39157 6.41515 6.53400 6.71201 6.72169 6.97393 7.00354 7.11362 7.43727 7.62125 7.66402 7.81388 7.99404 8.34195 8.41658 9.03904 9.61307 11.10937 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.002743 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.688337 B =10205.545392 C =11339.272747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.378 5.378 3 C 0.066 3.934 4 C -0.206 4.206 5 C -0.039 4.039 6 H 0.122 0.878 7 C -0.143 4.143 8 C -0.183 4.183 9 H 0.126 0.874 10 C 0.544 3.456 11 O -0.554 6.554 12 N -0.600 5.600 13 C 0.104 3.896 14 C -0.121 4.121 15 C -0.080 4.080 16 C 0.028 3.972 17 C -0.517 4.517 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.129 4.129 26 C 0.112 3.888 27 C 0.055 3.945 28 N -0.298 5.298 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.706 -3.590 -21.438 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.160 5.160 3 C -0.080 4.080 4 C -0.218 4.218 5 C -0.059 4.059 6 H 0.140 0.860 7 C -0.180 4.180 8 C -0.204 4.204 9 H 0.144 0.856 10 C 0.333 3.667 11 O -0.433 6.433 12 N -0.332 5.332 13 C -0.018 4.018 14 C -0.159 4.159 15 C -0.099 4.099 16 C -0.009 4.009 17 C -0.555 4.555 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.168 4.168 26 C -0.010 4.010 27 C -0.131 4.131 28 N -0.119 5.119 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.193 0.807 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -10.829 -3.984 -21.524 24.422 hybrid contribution 0.869 -0.161 0.916 1.273 sum -9.960 -4.145 -20.608 23.261 Atomic orbital electron populations 1.21864 0.74120 1.04645 1.03319 1.48447 1.06686 1.03837 1.57032 1.22285 0.90699 0.93474 1.01589 1.19284 0.93094 0.93123 1.16282 1.20177 0.86990 0.99198 0.99558 0.86023 1.23000 0.98163 1.00969 0.95900 1.22403 1.05063 0.99300 0.93604 0.85646 1.19596 0.78484 0.89158 0.79501 1.90641 1.64263 1.30680 1.57749 1.48078 1.43268 1.10055 1.31807 1.21880 1.01189 0.84338 0.94441 1.21838 1.00664 1.01119 0.92240 1.21188 0.98179 0.91946 0.98599 1.19119 0.97049 0.96989 0.87758 1.21199 1.38836 1.03885 0.91574 0.92643 1.25023 0.95475 0.96177 0.97788 1.69951 1.44713 1.32146 1.06701 0.86707 0.79489 0.83519 0.78574 1.20284 1.21381 1.20268 1.22035 1.01855 0.99715 0.93147 1.21678 0.96254 0.87500 0.95579 1.23760 0.95204 0.94438 0.99738 1.77368 1.01622 1.08304 1.24580 0.90775 0.89253 0.89367 0.80745 0.87793 0.88029 0.90210 0.91531 0.89681 0.92364 0.92344 0.96620 0.96683 0.92989 0.91165 0.92128 0.91829 0.89724 0.80077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 11.47 59.85 0.69 1.23 16 2 N -0.38 -3.63 4.01 -68.16 -0.27 -3.91 16 3 C 0.07 0.61 11.40 -17.23 -0.20 0.42 16 4 C -0.21 -2.12 5.76 -105.05 -0.61 -2.73 16 5 C -0.04 -0.41 5.76 -91.77 -0.53 -0.94 16 6 H 0.12 1.38 7.67 -51.93 -0.40 0.98 16 7 C -0.14 -1.30 9.73 -26.74 -0.26 -1.56 16 8 C -0.18 -2.09 4.84 -91.77 -0.44 -2.53 16 9 H 0.13 1.37 6.55 -51.93 -0.34 1.03 16 10 C 0.54 8.06 7.48 -10.98 -0.08 7.97 16 11 O -0.55 -9.76 15.67 5.56 0.09 -9.68 16 12 N -0.60 -8.82 2.98 -173.01 -0.52 -9.34 16 13 C 0.10 1.41 6.32 -3.94 -0.02 1.39 16 14 C -0.12 -2.07 5.17 -26.84 -0.14 -2.21 16 15 C -0.08 -1.55 2.10 -90.58 -0.19 -1.74 16 16 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 17 C -0.52 -13.95 8.39 -34.44 -0.29 -14.24 16 18 H 0.06 1.43 7.06 -52.48 -0.37 1.06 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 21 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.13 -2.19 5.36 -26.59 -0.14 -2.34 16 26 C 0.11 1.69 6.44 -3.69 -0.02 1.67 16 27 C 0.05 0.57 11.35 -17.36 -0.20 0.37 16 28 N -0.30 -3.48 12.58 30.63 0.39 -3.10 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.10 0.73 6.98 -51.93 -0.36 0.37 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.91 5.51 -51.93 -0.29 0.63 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.54 6.91 -51.92 -0.36 1.18 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.08 1.31 7.00 -51.93 -0.36 0.95 16 47 H 0.18 1.41 7.19 -52.49 -0.38 1.03 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -33.91 379.80 -9.02 -42.94 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.49 Total: 0.22 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.66 Total: -13.19 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.33 Total: -42.22 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.91 -9.02 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583324016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.607 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds