Wall clock time and date at job start Tue Mar 31 2020 11:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34940 * 126.03757 * 2 1 4 4 C 1.35317 * 107.74438 * 179.77616 * 3 2 1 5 5 C 1.50703 * 126.04130 * 180.25149 * 4 3 2 6 6 H 1.09005 * 115.54521 * 334.33527 * 5 4 3 7 7 C 1.52994 * 117.50272 * 188.62199 * 5 4 3 8 8 C 1.52995 * 60.00192 * 252.51251 * 7 5 4 9 9 H 1.08994 * 117.51843 * 107.48202 * 8 7 5 10 10 C 1.50706 * 117.49791 * 252.51172 * 8 7 5 11 11 O 1.21277 * 120.00200 * 68.61779 * 10 8 7 12 12 N 1.34780 * 119.99739 * 248.62610 * 10 8 7 13 13 C 1.46921 * 120.63095 * 359.71177 * 12 10 8 14 14 C 1.52761 * 109.00764 * 233.58971 * 13 12 10 15 15 C 1.53036 * 109.38225 * 305.58631 * 14 13 12 16 16 C 1.53006 * 109.45884 * 181.26256 * 15 14 13 17 17 C 1.50696 * 109.47163 * 64.93522 * 16 15 14 18 18 H 1.08003 * 120.00102 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99824 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00408 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99857 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47123 * 59.99652 * 21 19 17 23 23 H 1.48501 * 109.47263 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46916 * 299.99756 * 21 19 17 25 25 C 1.53041 * 109.53644 * 61.24448 * 15 14 13 26 26 C 1.46919 * 120.62650 * 179.97438 * 12 10 8 27 27 C 1.39872 * 107.92021 * 0.23195 * 4 3 2 28 28 N 1.30838 * 108.20312 * 359.97438 * 27 4 3 29 29 H 1.08998 * 109.47306 * 89.99468 * 1 2 3 30 30 H 1.09006 * 109.46968 * 209.99780 * 1 2 3 31 31 H 1.08996 * 109.46982 * 329.98985 * 1 2 3 32 32 H 1.08002 * 126.13053 * 0.04913 * 3 2 1 33 33 H 1.09003 * 117.49437 * 0.02562 * 7 5 4 34 34 H 1.09003 * 117.50061 * 145.01798 * 7 5 4 35 35 H 1.08999 * 109.58475 * 353.42585 * 13 12 10 36 36 H 1.08997 * 109.58805 * 113.84972 * 13 12 10 37 37 H 1.09008 * 109.56404 * 185.55620 * 14 13 12 38 38 H 1.08993 * 109.39125 * 65.52093 * 14 13 12 39 39 H 1.09000 * 109.45666 * 301.23257 * 15 14 13 40 40 H 1.09003 * 109.47125 * 184.93859 * 16 15 14 41 41 H 1.08998 * 109.46892 * 304.93299 * 16 15 14 42 42 H 0.96998 * 120.00235 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.49947 * 178.67973 * 25 15 14 44 44 H 1.08997 * 109.49718 * 58.58479 * 25 15 14 45 45 H 1.09000 * 109.59014 * 246.14938 * 26 12 10 46 46 H 1.09000 * 109.59256 * 6.57808 * 26 12 10 47 47 H 1.08001 * 125.89461 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6664 0.0050 5 6 4.7680 1.5451 0.0122 6 1 4.6350 2.5402 -0.4125 7 6 6.1252 0.8674 -0.1863 8 6 5.7323 1.4035 1.1917 9 1 5.4810 0.6751 1.9625 10 6 6.4259 2.6504 1.6769 11 8 6.2104 3.7140 1.1354 12 7 7.2858 2.5834 2.7126 13 6 7.5524 1.3034 3.3826 14 6 7.3124 1.4674 4.8824 15 6 8.1489 2.6372 5.4056 16 6 7.9340 2.7832 6.9134 17 6 8.4685 1.5628 7.6175 18 1 8.9170 0.7631 7.0467 19 6 8.3859 1.4675 8.9905 20 7 7.8402 2.4414 9.6856 21 14 9.0490 -0.0451 9.8633 22 1 10.5003 -0.1832 9.5807 23 1 8.8404 0.0965 11.3267 24 1 8.3329 -1.2514 9.3762 25 6 7.7208 3.9273 4.7023 26 6 7.9700 3.7901 3.1966 27 6 3.5346 -0.7322 0.0028 28 7 2.2891 -1.1329 -0.0027 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.9282 2.1193 0.0007 33 1 6.1325 -0.2141 -0.3226 34 1 6.8855 1.4164 -0.7420 35 1 6.8835 0.5383 2.9884 36 1 8.5880 1.0098 3.2111 37 1 7.6018 0.5529 5.4005 38 1 6.2559 1.6673 5.0600 39 1 9.2035 2.4476 5.2057 40 1 8.4597 3.6686 7.2713 41 1 6.8687 2.8848 7.1204 42 1 7.7818 2.3742 10.6515 43 1 8.3007 4.7639 5.0922 44 1 6.6603 4.1045 4.8811 45 1 9.0403 3.7032 3.0096 46 1 7.5766 4.6655 2.6798 47 1 4.4054 -1.3711 0.0061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583324016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:04 Heat of formation + Delta-G solvation = 36.310075 kcal Electronic energy + Delta-G solvation = -26087.970615 eV Core-core repulsion = 22464.918170 eV Total energy + Delta-G solvation = -3623.052446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.22492 -41.25010 -39.01649 -37.36517 -35.66397 -34.01353 -33.84994 -32.14177 -31.08005 -29.85814 -27.75706 -26.69358 -25.09331 -24.06074 -23.85704 -22.92182 -21.92617 -21.15443 -20.63339 -19.68431 -18.49584 -18.35758 -17.58322 -16.97664 -16.53032 -16.29973 -16.20125 -15.44251 -15.34191 -15.24407 -14.91114 -14.84873 -14.49262 -14.18535 -14.09203 -13.86694 -13.61385 -13.40404 -13.32502 -13.24591 -12.95547 -12.77065 -12.70267 -12.47374 -12.31873 -12.12430 -11.80137 -11.72833 -11.53217 -11.38461 -11.31085 -11.09970 -10.84281 -10.68361 -10.50104 -10.36799 -9.57522 -9.17719 -8.15304 -6.25023 0.92334 1.42521 1.44902 1.46941 1.52281 1.69299 1.78447 2.09548 2.43784 3.07843 3.18392 3.46652 3.67296 3.85882 3.98040 3.99376 4.05828 4.10376 4.14746 4.22801 4.25699 4.36338 4.43924 4.44420 4.44713 4.61745 4.69684 4.70466 4.76811 4.85390 4.89785 4.91037 4.96343 5.06036 5.12408 5.16764 5.32664 5.34531 5.36676 5.42260 5.55802 5.62820 5.69632 5.83082 5.90507 6.11432 6.29778 6.48752 6.73446 6.91877 7.20163 7.43831 8.96597 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.002743 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.688337 B =10205.545392 C =11339.272747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.063 3.937 4 C -0.222 4.222 5 C -0.037 4.037 6 H 0.109 0.891 7 C -0.121 4.121 8 C -0.192 4.192 9 H 0.134 0.866 10 C 0.541 3.459 11 O -0.588 6.588 12 N -0.604 5.604 13 C 0.113 3.887 14 C -0.115 4.115 15 C -0.073 4.073 16 C 0.033 3.967 17 C -0.526 4.526 18 H 0.069 0.931 19 C -0.005 4.005 20 N -0.939 5.939 21 Si 0.960 3.040 22 H -0.266 1.266 23 H -0.290 1.290 24 H -0.265 1.265 25 C -0.122 4.122 26 C 0.118 3.882 27 C 0.052 3.948 28 N -0.334 5.334 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.197 0.803 33 H 0.131 0.869 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.064 0.936 40 H -0.015 1.015 41 H -0.018 1.018 42 H 0.261 0.739 43 H 0.071 0.929 44 H 0.043 0.957 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.251 -5.606 -23.095 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.164 5.164 3 C -0.084 4.084 4 C -0.234 4.234 5 C -0.057 4.057 6 H 0.127 0.873 7 C -0.158 4.158 8 C -0.213 4.213 9 H 0.152 0.848 10 C 0.331 3.669 11 O -0.469 6.469 12 N -0.335 5.335 13 C -0.009 4.009 14 C -0.153 4.153 15 C -0.091 4.091 16 C -0.005 4.005 17 C -0.564 4.564 18 H 0.087 0.913 19 C -0.202 4.202 20 N -0.580 5.580 21 Si 0.785 3.215 22 H -0.191 1.191 23 H -0.216 1.216 24 H -0.189 1.189 25 C -0.160 4.160 26 C -0.004 4.004 27 C -0.134 4.134 28 N -0.156 5.156 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.214 0.786 33 H 0.149 0.851 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.003 0.997 41 H 0.001 0.999 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -10.378 -6.026 -23.199 26.119 hybrid contribution 0.653 0.557 1.442 1.678 sum -9.725 -5.469 -21.757 24.451 Atomic orbital electron populations 1.22174 0.72161 1.05757 1.04626 1.48782 1.07925 1.03375 1.56329 1.22735 0.90772 0.94443 1.00494 1.19363 0.93329 0.93219 1.17459 1.20077 0.87822 0.98975 0.98863 0.87319 1.23136 0.96933 1.02413 0.93304 1.22350 1.06092 0.98132 0.94718 0.84850 1.20171 0.77911 0.89838 0.78994 1.90624 1.65228 1.32249 1.58829 1.48176 1.43260 1.10163 1.31922 1.21881 1.03118 0.84468 0.91386 1.21728 0.99071 0.99454 0.95083 1.21038 0.99071 0.94179 0.94859 1.19019 0.94299 0.95298 0.91838 1.21645 1.38155 1.04565 0.92039 0.91332 1.25984 0.95846 0.99403 0.98920 1.70109 1.46421 1.34529 1.06920 0.85567 0.79277 0.79694 0.76932 1.19085 1.21582 1.18933 1.21918 1.00672 0.98623 0.94797 1.21563 0.97413 0.87969 0.93452 1.24125 0.95528 0.94736 0.98976 1.77307 1.02492 1.09779 1.26041 0.89360 0.89260 0.87189 0.78614 0.85121 0.88016 0.87397 0.89629 0.90497 0.93972 0.91721 0.99661 0.99930 0.93079 0.91083 0.93834 0.89955 0.90205 0.78063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 11.47 127.77 1.47 2.31 16 2 N -0.38 -6.80 4.01 -369.56 -1.48 -8.28 16 3 C 0.06 1.07 11.40 83.54 0.95 2.03 16 4 C -0.22 -4.19 5.76 -20.14 -0.12 -4.30 16 5 C -0.04 -0.72 5.76 -11.54 -0.07 -0.78 16 6 H 0.11 2.38 7.67 -2.38 -0.02 2.36 16 7 C -0.12 -1.84 9.73 30.59 0.30 -1.54 16 8 C -0.19 -3.95 4.84 -11.54 -0.06 -4.01 16 9 H 0.13 2.54 6.55 -2.39 -0.02 2.53 16 10 C 0.54 15.21 7.48 87.66 0.66 15.86 16 11 O -0.59 -20.36 15.67 -3.02 -0.05 -20.41 16 12 N -0.60 -16.70 2.98 -819.68 -2.44 -19.14 16 13 C 0.11 2.78 6.32 86.22 0.54 3.32 16 14 C -0.12 -3.85 5.17 30.53 0.16 -3.69 16 15 C -0.07 -2.81 2.10 -10.77 -0.02 -2.83 16 16 C 0.03 1.67 4.45 29.85 0.13 1.81 16 17 C -0.53 -28.63 8.39 25.60 0.21 -28.42 16 18 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 19 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 20 N -0.94 -57.27 13.29 21.45 0.28 -56.98 16 21 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 24 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 25 C -0.12 -4.17 5.36 30.69 0.16 -4.01 16 26 C 0.12 3.44 6.44 86.38 0.56 4.00 16 27 C 0.05 0.97 11.35 85.24 0.97 1.94 16 28 N -0.33 -7.40 12.58 -57.02 -0.72 -8.11 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16 33 H 0.13 1.31 6.98 -2.39 -0.02 1.29 16 34 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.11 2.09 5.51 -2.39 -0.01 2.08 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 2.70 6.91 -2.38 -0.02 2.68 16 38 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 40 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 41 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 42 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 43 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 45 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.08 2.44 7.00 -2.39 -0.02 2.42 16 47 H 0.20 2.58 7.19 -2.91 -0.02 2.55 16 Total: -1.00 -75.14 379.80 4.89 -70.25 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.96 Total: 15.35 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 6.31 Total: -18.11 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -4.36 Total: -92.52 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.41 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -75.14 4.89 -70.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583324016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.562 kcal (2) G-P(sol) polarization free energy of solvation -75.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds