Wall clock time and date at job start Tue Mar 31 2020 11:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00013 * 2 1 4 4 C 1.39071 * 119.99957 * 180.02562 * 2 1 3 5 5 C 1.39447 * 120.40147 * 179.71825 * 4 2 1 6 6 C 1.38231 * 118.43147 * 179.71042 * 5 4 2 7 7 C 1.39532 * 119.15120 * 0.60938 * 6 5 4 8 8 C 1.47839 * 119.63362 * 179.67864 * 7 6 5 9 9 O 1.21555 * 120.00154 * 9.70937 * 8 7 6 10 10 N 1.34781 * 119.99694 * 189.70525 * 8 7 6 11 11 C 1.46920 * 120.63205 * 7.49224 * 10 8 7 12 12 C 1.53626 * 108.54406 * 126.36881 * 11 10 8 13 13 C 1.53038 * 109.24262 * 54.85456 * 12 11 10 14 14 C 1.52998 * 109.44912 * 178.50088 * 13 12 11 15 15 C 1.50696 * 109.47185 * 295.05883 * 14 13 12 16 16 H 1.08004 * 119.99850 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00410 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00222 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99770 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47410 * 89.99785 * 19 17 15 21 21 H 1.48500 * 109.47124 * 209.99996 * 19 17 15 22 22 H 1.48503 * 109.46989 * 329.99303 * 19 17 15 23 23 C 1.53038 * 109.53809 * 298.51234 * 13 12 11 24 24 C 1.46932 * 120.62722 * 187.76875 * 10 8 7 25 25 N 1.32839 * 120.72973 * 359.65223 * 7 6 5 26 26 C 1.31323 * 121.71317 * 0.02562 * 25 7 6 27 27 H 1.08995 * 109.47737 * 89.99550 * 1 2 3 28 28 H 1.09005 * 109.47373 * 329.99614 * 1 2 3 29 29 H 1.09003 * 109.47346 * 210.00165 * 1 2 3 30 30 H 1.09001 * 109.46921 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.46678 * 120.00721 * 3 2 1 32 32 H 1.09003 * 109.47098 * 240.00274 * 3 2 1 33 33 H 1.07998 * 120.78684 * 359.97438 * 5 4 2 34 34 H 1.07993 * 120.42609 * 180.26304 * 6 5 4 35 35 H 1.09006 * 109.58691 * 246.20065 * 11 10 8 36 36 H 1.09001 * 109.59076 * 6.62512 * 11 10 8 37 37 H 1.09002 * 109.63323 * 294.86368 * 12 11 10 38 38 H 1.09003 * 109.43471 * 174.72590 * 12 11 10 39 39 H 1.08999 * 109.46298 * 58.53463 * 13 12 11 40 40 H 1.08996 * 109.47537 * 55.06384 * 14 13 12 41 41 H 1.09002 * 109.47014 * 175.05992 * 14 13 12 42 42 H 0.97002 * 120.00293 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.50231 * 301.41177 * 23 13 12 44 44 H 1.09001 * 109.50065 * 181.31523 * 23 13 12 45 45 H 1.09000 * 109.58778 * 353.37895 * 24 10 8 46 46 H 1.09005 * 109.58230 * 113.65558 * 24 10 8 47 47 H 1.08004 * 119.61164 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1603 -1.2044 -0.0005 5 6 3.5547 -1.2142 -0.0065 6 6 4.2043 -2.4343 -0.0006 7 6 3.4481 -3.6070 -0.0021 8 6 4.1319 -4.9177 -0.0031 9 8 5.3329 -4.9769 0.1749 10 7 3.4235 -6.0471 -0.2012 11 6 2.0051 -5.9845 -0.5791 12 6 1.8020 -6.8174 -1.8539 13 6 2.3275 -8.2354 -1.6191 14 6 2.0935 -9.0797 -2.8734 15 6 0.6126 -9.2350 -3.1052 16 1 -0.0913 -8.7770 -2.4261 17 6 0.1562 -9.9610 -4.1849 18 7 -1.1362 -10.0961 -4.3875 19 14 1.3736 -10.7526 -5.3599 20 1 1.6952 -12.1240 -4.8898 21 1 0.7771 -10.8221 -6.7181 22 1 2.6163 -9.9409 -5.4061 23 6 3.8260 -8.1817 -1.3130 24 6 4.0536 -7.3643 -0.0375 25 7 2.1206 -3.5586 -0.0020 26 6 1.4715 -2.4170 -0.0011 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 0.8900 0.5139 29 1 -0.3634 -0.8900 0.5139 30 1 1.4891 2.0972 0.0005 31 1 2.8242 1.3264 0.8899 32 1 2.8241 1.3265 -0.8900 33 1 4.1140 -0.2903 -0.0111 34 1 5.2833 -2.4795 -0.0007 35 1 1.3939 -6.3904 0.2271 36 1 1.7228 -4.9490 -0.7687 37 1 2.3456 -6.3602 -2.6806 38 1 0.7397 -6.8584 -2.0949 39 1 1.8006 -8.6831 -0.7765 40 1 2.5461 -8.5861 -3.7333 41 1 2.5453 -10.0625 -2.7393 42 1 -1.4573 -10.6072 -5.1469 43 1 4.3507 -7.7117 -2.1447 44 1 4.2044 -9.1937 -1.1689 45 1 5.1233 -7.2394 0.1305 46 1 3.6078 -7.8793 0.8135 47 1 0.3914 -2.4173 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584293748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:55 Heat of formation + Delta-G solvation = 20.772818 kcal Electronic energy + Delta-G solvation = -26569.661889 eV Core-core repulsion = 22945.935697 eV Total energy + Delta-G solvation = -3623.726192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93447 -39.41740 -37.36542 -36.95371 -33.99842 -32.63092 -32.03836 -31.13757 -30.17848 -28.87270 -28.44106 -26.15585 -24.47829 -23.56799 -22.74652 -22.30145 -21.19806 -20.03588 -18.98003 -17.65096 -17.38557 -16.64927 -16.61322 -15.74152 -15.68935 -15.10166 -14.97900 -14.57923 -14.35567 -14.04021 -13.87695 -13.64852 -13.50005 -13.14884 -13.11924 -12.97952 -12.81473 -12.63596 -12.49086 -12.26361 -12.13394 -11.73670 -11.35394 -11.03308 -10.81057 -10.60051 -10.57741 -10.24399 -10.05777 -9.91823 -9.79156 -9.62362 -9.42333 -9.00546 -8.69894 -8.47025 -8.23378 -7.77457 -5.98904 -3.95335 0.74717 1.07095 2.56470 2.85670 3.27093 3.34702 3.42113 3.47121 3.84465 4.17338 4.43456 4.46184 4.50643 4.56028 4.71157 4.83643 4.91624 5.03021 5.09131 5.17853 5.25442 5.34563 5.39141 5.46948 5.52823 5.59337 5.65881 5.76594 5.84126 5.85652 6.03954 6.10727 6.17402 6.43962 6.47065 6.51847 6.61731 6.65983 6.80281 6.94479 6.97160 7.01395 7.16693 7.35318 7.54401 7.62173 7.79214 7.86985 8.39675 8.60734 9.06687 9.64799 11.14456 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015856 B = 0.003048 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.514676 B = 9184.353388 C =10433.592334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.624 5.624 3 C 0.091 3.909 4 C 0.185 3.815 5 C -0.167 4.167 6 C -0.057 4.057 7 C 0.017 3.983 8 C 0.573 3.427 9 O -0.556 6.556 10 N -0.585 5.585 11 C 0.072 3.928 12 C -0.120 4.120 13 C -0.073 4.073 14 C -0.010 4.010 15 C -0.512 4.512 16 H 0.074 0.926 17 C 0.065 3.935 18 N -0.906 5.906 19 Si 0.877 3.123 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.130 4.130 24 C 0.111 3.889 25 N -0.400 5.400 26 C 0.023 3.977 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.137 0.863 34 H 0.146 0.854 35 H 0.060 0.940 36 H 0.141 0.859 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.014 0.986 41 H 0.010 0.990 42 H 0.261 0.739 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.065 0.935 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.972 23.645 10.916 26.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.334 5.334 3 C -0.052 4.052 4 C 0.078 3.922 5 C -0.197 4.197 6 C -0.079 4.079 7 C -0.121 4.121 8 C 0.361 3.639 9 O -0.435 6.435 10 N -0.316 5.316 11 C -0.050 4.050 12 C -0.158 4.158 13 C -0.092 4.092 14 C -0.047 4.047 15 C -0.550 4.550 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.546 5.546 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.191 1.191 23 C -0.169 4.169 24 C -0.012 4.012 25 N -0.111 5.111 26 C -0.142 4.142 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.155 0.845 34 H 0.164 0.836 35 H 0.079 0.921 36 H 0.157 0.843 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.032 0.968 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.083 0.917 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.926 22.902 10.892 26.044 hybrid contribution 0.793 0.210 -0.809 1.152 sum 6.719 23.112 10.084 26.096 Atomic orbital electron populations 1.21817 0.78636 1.03250 1.01973 1.46268 1.05557 1.03053 1.78537 1.21711 0.97295 0.84645 1.01585 1.19072 0.92203 0.87313 0.93568 1.21030 0.92035 0.98804 1.07862 1.21817 1.01753 0.90856 0.93429 1.20857 0.89438 0.94078 1.07747 1.17776 0.85910 0.83202 0.77031 1.90728 1.13785 1.86700 1.52252 1.48004 1.12551 1.05094 1.65927 1.23202 0.79089 1.05730 0.96959 1.22006 1.02894 0.94959 0.95912 1.21023 0.92504 0.95807 0.99880 1.19625 0.97687 0.94355 0.93043 1.21160 0.90464 1.32363 1.11006 0.90809 1.25023 0.94900 0.96073 0.97584 1.69915 1.12831 1.41829 1.29975 0.86818 0.82105 0.80113 0.80471 1.20419 1.21567 1.19065 1.22037 0.98828 0.99296 0.96697 1.21682 0.98851 0.82430 0.98204 1.67505 1.08799 1.26976 1.07819 1.22623 1.00458 0.85911 1.05238 0.92556 0.91045 0.90731 0.90439 0.92425 0.92357 0.84473 0.83634 0.92141 0.84301 0.92903 0.89567 0.91881 0.96772 0.97172 0.92896 0.92156 0.91310 0.89746 0.91679 0.82149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 10.16 59.85 0.61 1.01 16 2 N -0.62 -4.17 3.39 -187.39 -0.64 -4.81 16 3 C 0.09 0.39 9.42 59.85 0.56 0.95 16 4 C 0.19 1.71 6.57 -83.67 -0.55 1.16 16 5 C -0.17 -1.57 9.40 -39.13 -0.37 -1.93 16 6 C -0.06 -0.68 9.61 -39.10 -0.38 -1.05 16 7 C 0.02 0.25 6.58 -83.02 -0.55 -0.30 16 8 C 0.57 9.69 7.64 -12.33 -0.09 9.60 16 9 O -0.56 -10.45 15.78 5.32 0.08 -10.37 16 10 N -0.59 -9.78 2.97 -173.61 -0.51 -10.29 16 11 C 0.07 1.18 5.91 -3.49 -0.02 1.16 16 12 C -0.12 -2.27 5.20 -26.39 -0.14 -2.41 16 13 C -0.07 -1.47 2.10 -90.58 -0.19 -1.66 16 14 C -0.01 -0.24 3.52 -27.89 -0.10 -0.33 16 15 C -0.51 -14.45 8.94 -34.44 -0.31 -14.75 16 16 H 0.07 2.21 7.30 -52.48 -0.38 1.83 16 17 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 18 N -0.91 -28.01 13.96 55.43 0.77 -27.23 16 19 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 22 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 23 C -0.13 -2.26 5.36 -26.61 -0.14 -2.41 16 24 C 0.11 1.78 6.44 -3.71 -0.02 1.75 16 25 N -0.40 -5.35 6.10 -9.63 -0.06 -5.41 16 26 C 0.02 0.24 10.37 -17.31 -0.18 0.06 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.21 7.92 -51.93 -0.41 -0.20 16 29 H 0.07 0.33 6.20 -51.93 -0.32 0.01 16 30 H 0.08 0.20 7.79 -51.93 -0.40 -0.21 16 31 H 0.06 0.23 7.98 -51.93 -0.41 -0.19 16 32 H 0.06 0.24 7.96 -51.93 -0.41 -0.17 16 33 H 0.14 0.92 6.85 -52.49 -0.36 0.56 16 34 H 0.15 1.63 7.66 -52.49 -0.40 1.23 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.14 2.18 4.00 -85.43 -0.34 1.84 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.78 6.91 -51.93 -0.36 1.42 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 41 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.08 1.35 7.00 -51.93 -0.36 0.99 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.16 1.32 6.14 -52.48 -0.32 1.00 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -34.21 366.92 -8.84 -43.05 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.39 Total: -0.55 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.96 Total: -7.36 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.44 Total: -47.75 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.21 -8.84 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584293748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.826 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds