Wall clock time and date at job start Tue Mar 31 2020 11:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00013 * 2 1 4 4 C 1.39071 * 119.99957 * 180.02562 * 2 1 3 5 5 C 1.39447 * 120.40147 * 179.71825 * 4 2 1 6 6 C 1.38231 * 118.43147 * 179.71042 * 5 4 2 7 7 C 1.39532 * 119.15120 * 0.60938 * 6 5 4 8 8 C 1.47839 * 119.63362 * 179.67864 * 7 6 5 9 9 O 1.21555 * 120.00154 * 9.70937 * 8 7 6 10 10 N 1.34781 * 119.99694 * 189.70525 * 8 7 6 11 11 C 1.46920 * 120.63205 * 7.49224 * 10 8 7 12 12 C 1.53626 * 108.54406 * 126.36881 * 11 10 8 13 13 C 1.53038 * 109.24262 * 54.85456 * 12 11 10 14 14 C 1.52998 * 109.44912 * 178.50088 * 13 12 11 15 15 C 1.50696 * 109.47185 * 295.05883 * 14 13 12 16 16 H 1.08004 * 119.99850 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00410 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00222 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99770 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47410 * 89.99785 * 19 17 15 21 21 H 1.48500 * 109.47124 * 209.99996 * 19 17 15 22 22 H 1.48503 * 109.46989 * 329.99303 * 19 17 15 23 23 C 1.53038 * 109.53809 * 298.51234 * 13 12 11 24 24 C 1.46932 * 120.62722 * 187.76875 * 10 8 7 25 25 N 1.32839 * 120.72973 * 359.65223 * 7 6 5 26 26 C 1.31323 * 121.71317 * 0.02562 * 25 7 6 27 27 H 1.08995 * 109.47737 * 89.99550 * 1 2 3 28 28 H 1.09005 * 109.47373 * 329.99614 * 1 2 3 29 29 H 1.09003 * 109.47346 * 210.00165 * 1 2 3 30 30 H 1.09001 * 109.46921 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.46678 * 120.00721 * 3 2 1 32 32 H 1.09003 * 109.47098 * 240.00274 * 3 2 1 33 33 H 1.07998 * 120.78684 * 359.97438 * 5 4 2 34 34 H 1.07993 * 120.42609 * 180.26304 * 6 5 4 35 35 H 1.09006 * 109.58691 * 246.20065 * 11 10 8 36 36 H 1.09001 * 109.59076 * 6.62512 * 11 10 8 37 37 H 1.09002 * 109.63323 * 294.86368 * 12 11 10 38 38 H 1.09003 * 109.43471 * 174.72590 * 12 11 10 39 39 H 1.08999 * 109.46298 * 58.53463 * 13 12 11 40 40 H 1.08996 * 109.47537 * 55.06384 * 14 13 12 41 41 H 1.09002 * 109.47014 * 175.05992 * 14 13 12 42 42 H 0.97002 * 120.00293 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.50231 * 301.41177 * 23 13 12 44 44 H 1.09001 * 109.50065 * 181.31523 * 23 13 12 45 45 H 1.09000 * 109.58778 * 353.37895 * 24 10 8 46 46 H 1.09005 * 109.58230 * 113.65558 * 24 10 8 47 47 H 1.08004 * 119.61164 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1603 -1.2044 -0.0005 5 6 3.5547 -1.2142 -0.0065 6 6 4.2043 -2.4343 -0.0006 7 6 3.4481 -3.6070 -0.0021 8 6 4.1319 -4.9177 -0.0031 9 8 5.3329 -4.9769 0.1749 10 7 3.4235 -6.0471 -0.2012 11 6 2.0051 -5.9845 -0.5791 12 6 1.8020 -6.8174 -1.8539 13 6 2.3275 -8.2354 -1.6191 14 6 2.0935 -9.0797 -2.8734 15 6 0.6126 -9.2350 -3.1052 16 1 -0.0913 -8.7770 -2.4261 17 6 0.1562 -9.9610 -4.1849 18 7 -1.1362 -10.0961 -4.3875 19 14 1.3736 -10.7526 -5.3599 20 1 1.6952 -12.1240 -4.8898 21 1 0.7771 -10.8221 -6.7181 22 1 2.6163 -9.9409 -5.4061 23 6 3.8260 -8.1817 -1.3130 24 6 4.0536 -7.3643 -0.0375 25 7 2.1206 -3.5586 -0.0020 26 6 1.4715 -2.4170 -0.0011 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 0.8900 0.5139 29 1 -0.3634 -0.8900 0.5139 30 1 1.4891 2.0972 0.0005 31 1 2.8242 1.3264 0.8899 32 1 2.8241 1.3265 -0.8900 33 1 4.1140 -0.2903 -0.0111 34 1 5.2833 -2.4795 -0.0007 35 1 1.3939 -6.3904 0.2271 36 1 1.7228 -4.9490 -0.7687 37 1 2.3456 -6.3602 -2.6806 38 1 0.7397 -6.8584 -2.0949 39 1 1.8006 -8.6831 -0.7765 40 1 2.5461 -8.5861 -3.7333 41 1 2.5453 -10.0625 -2.7393 42 1 -1.4573 -10.6072 -5.1469 43 1 4.3507 -7.7117 -2.1447 44 1 4.2044 -9.1937 -1.1689 45 1 5.1233 -7.2394 0.1305 46 1 3.6078 -7.8793 0.8135 47 1 0.3914 -2.4173 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584293748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:54 Heat of formation + Delta-G solvation = -0.064956 kcal Electronic energy + Delta-G solvation = -26570.565483 eV Core-core repulsion = 22945.935697 eV Total energy + Delta-G solvation = -3624.629786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90101 -40.52789 -38.70152 -37.74999 -35.68347 -34.13985 -33.33413 -32.30703 -31.27240 -30.22529 -29.28135 -27.14547 -25.87287 -24.49975 -24.03181 -23.52038 -22.44099 -21.43504 -20.38938 -18.88064 -18.47222 -18.31600 -17.51197 -16.83053 -16.52433 -16.36059 -16.01743 -15.86389 -15.42738 -15.21716 -15.09869 -14.93949 -14.79868 -14.53719 -14.27736 -14.09729 -13.90967 -13.62362 -13.45662 -13.31350 -13.06750 -13.04202 -12.84160 -12.50357 -12.38953 -12.11883 -11.98613 -11.75016 -11.44262 -11.31487 -11.27482 -11.22582 -10.92179 -10.71856 -10.63722 -9.84361 -9.57538 -8.43785 -8.24764 -6.26014 -0.16299 0.27589 1.35389 1.37202 1.48959 1.75481 1.99656 2.11121 2.38276 2.89014 3.10468 3.21919 3.67282 3.77316 3.88678 4.00658 4.07295 4.09268 4.13781 4.27589 4.30505 4.45996 4.47431 4.52761 4.63714 4.68204 4.74204 4.77601 4.88493 4.90258 4.91084 4.95872 4.99393 5.02445 5.06959 5.14477 5.22345 5.28080 5.37153 5.42182 5.54185 5.69014 5.74708 5.83157 6.10196 6.21362 6.35845 6.44153 6.78460 6.80765 7.17422 7.37372 8.91622 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015856 B = 0.003048 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.514676 B = 9184.353388 C =10433.592334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.618 5.618 3 C 0.081 3.919 4 C 0.196 3.804 5 C -0.166 4.166 6 C -0.057 4.057 7 C -0.021 4.021 8 C 0.569 3.431 9 O -0.583 6.583 10 N -0.592 5.592 11 C 0.084 3.916 12 C -0.113 4.113 13 C -0.070 4.070 14 C -0.006 4.006 15 C -0.515 4.515 16 H 0.041 0.959 17 C 0.004 3.996 18 N -0.951 5.951 19 Si 0.943 3.057 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.253 1.253 23 C -0.121 4.121 24 C 0.112 3.888 25 N -0.419 5.419 26 C 0.015 3.985 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.166 0.834 34 H 0.146 0.854 35 H 0.063 0.937 36 H 0.152 0.848 37 H 0.043 0.957 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.010 0.990 41 H 0.016 0.984 42 H 0.264 0.736 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.862 25.823 11.231 28.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.325 5.325 3 C -0.061 4.061 4 C 0.086 3.914 5 C -0.196 4.196 6 C -0.078 4.078 7 C -0.158 4.158 8 C 0.359 3.641 9 O -0.464 6.464 10 N -0.322 5.322 11 C -0.037 4.037 12 C -0.151 4.151 13 C -0.089 4.089 14 C -0.044 4.044 15 C -0.553 4.553 16 H 0.059 0.941 17 C -0.192 4.192 18 N -0.593 5.593 19 Si 0.768 3.232 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.177 1.177 23 C -0.159 4.159 24 C -0.010 4.010 25 N -0.130 5.130 26 C -0.152 4.152 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.184 0.816 34 H 0.164 0.836 35 H 0.081 0.919 36 H 0.168 0.832 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.028 0.972 41 H 0.034 0.966 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.814 25.119 11.221 28.343 hybrid contribution 0.348 -0.235 -0.850 0.949 sum 7.162 24.884 10.370 27.894 Atomic orbital electron populations 1.22038 0.77349 1.04525 1.02622 1.46628 1.06614 1.02960 1.76294 1.21966 0.98027 0.83955 1.02135 1.19160 0.92395 0.88006 0.91815 1.21264 0.92264 0.98892 1.07188 1.21871 1.01756 0.91070 0.93132 1.20557 0.90069 0.93402 1.11791 1.18213 0.85724 0.84071 0.76096 1.90688 1.14880 1.87265 1.53612 1.48072 1.12485 1.05466 1.66166 1.23117 0.79280 1.05927 0.95426 1.21887 1.01024 0.95015 0.97192 1.20944 0.94705 0.95493 0.97772 1.19579 0.94687 0.95325 0.94787 1.21445 0.92266 1.31397 1.10189 0.94104 1.25921 0.96714 0.96943 0.99630 1.70058 1.14960 1.43221 1.31027 0.85761 0.79932 0.79524 0.78032 1.19268 1.21164 1.17710 1.21926 0.96282 1.00511 0.97161 1.21682 0.99153 0.82285 0.97867 1.67206 1.08588 1.28644 1.08577 1.22961 1.01347 0.85799 1.05074 0.92161 0.88738 0.90616 0.88228 0.91654 0.91937 0.81628 0.83642 0.91910 0.83177 0.93785 0.91992 0.92396 0.97160 0.96588 0.92718 0.92874 0.89729 0.89543 0.90320 0.80236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.47 10.16 127.77 1.30 1.77 16 2 N -0.62 -6.25 3.39 -746.78 -2.53 -8.78 16 3 C 0.08 0.39 9.42 127.77 1.20 1.59 16 4 C 0.20 3.18 6.57 38.58 0.25 3.43 16 5 C -0.17 -2.76 9.40 22.56 0.21 -2.55 16 6 C -0.06 -1.30 9.61 22.58 0.22 -1.09 16 7 C -0.02 -0.61 6.58 41.85 0.28 -0.33 16 8 C 0.57 19.46 7.64 86.78 0.66 20.13 16 9 O -0.58 -22.23 15.78 -3.89 -0.06 -22.29 16 10 N -0.59 -19.84 2.97 -821.45 -2.44 -22.28 16 11 C 0.08 2.80 5.91 86.51 0.51 3.31 16 12 C -0.11 -4.41 5.20 30.82 0.16 -4.25 16 13 C -0.07 -2.84 2.10 -10.77 -0.02 -2.87 16 14 C -0.01 -0.31 3.52 29.85 0.10 -0.20 16 15 C -0.51 -29.78 8.94 25.60 0.23 -29.55 16 16 H 0.04 2.56 7.30 -2.91 -0.02 2.54 16 17 C 0.00 0.25 5.47 84.65 0.46 0.71 16 18 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 19 Si 0.94 45.58 27.47 68.60 1.88 47.46 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 22 H -0.25 -11.62 6.54 99.48 0.65 -10.97 16 23 C -0.12 -4.10 5.36 30.67 0.16 -3.93 16 24 C 0.11 3.54 6.44 86.36 0.56 4.10 16 25 N -0.42 -11.07 6.10 -184.38 -1.12 -12.20 16 26 C 0.01 0.29 10.37 85.06 0.88 1.18 16 27 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.09 0.19 7.92 -2.38 -0.02 0.17 16 29 H 0.08 0.47 6.20 -2.39 -0.01 0.46 16 30 H 0.10 0.08 7.79 -2.39 -0.02 0.06 16 31 H 0.06 0.27 7.98 -2.39 -0.02 0.25 16 32 H 0.06 0.30 7.96 -2.39 -0.02 0.28 16 33 H 0.17 1.70 6.85 -2.91 -0.02 1.68 16 34 H 0.15 3.23 7.66 -2.91 -0.02 3.21 16 35 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.15 4.77 4.00 -68.54 -0.27 4.49 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 2.69 6.91 -2.39 -0.02 2.67 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 41 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16 42 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 45 H 0.09 2.73 7.00 -2.39 -0.02 2.71 16 46 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 47 H 0.18 2.65 6.14 -2.91 -0.02 2.63 16 Total: -1.00 -75.48 366.92 3.84 -71.64 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.64 Total: 14.88 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 7.17 Total: -8.55 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -5.80 Total: -103.15 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.06 Total: -22.29 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.88 Total: 47.46 kcal Total: -75.48 3.84 -71.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584293748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.575 kcal (2) G-P(sol) polarization free energy of solvation -75.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds