Wall clock time and date at job start Tue Mar 31 2020 11:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99852 * 2 1 4 4 C 1.50697 * 109.47017 * 293.95433 * 3 2 1 5 5 H 1.08000 * 120.00271 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99988 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00287 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47165 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47102 * 119.99922 * 8 6 4 11 11 H 1.48498 * 109.47574 * 240.00332 * 8 6 4 12 12 C 1.46898 * 111.00361 * 123.95310 * 2 1 3 13 13 C 1.53000 * 109.47031 * 66.04808 * 12 2 1 14 14 H 1.08996 * 109.47157 * 304.99782 * 13 12 2 15 15 O 1.42896 * 109.47206 * 64.99962 * 13 12 2 16 16 C 1.53005 * 109.47248 * 184.99987 * 13 12 2 17 17 N 1.46893 * 109.47109 * 179.97438 * 16 13 12 18 18 C 1.46903 * 111.00040 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47343 * 179.97438 * 18 17 16 20 20 C 1.34242 * 125.03209 * 94.99829 * 19 18 17 21 21 C 1.46486 * 106.99231 * 180.02562 * 20 19 18 22 22 C 1.39635 * 134.02433 * 180.02562 * 21 20 19 23 23 C 1.36628 * 119.75966 * 179.97438 * 22 21 20 24 24 C 1.38831 * 120.53083 * 0.03734 * 23 22 21 25 25 C 1.37755 * 120.66440 * 359.94200 * 24 23 22 26 26 C 1.39127 * 119.78052 * 0.03895 * 25 24 23 27 27 N 1.36827 * 125.03383 * 275.02948 * 19 18 17 28 28 H 0.96998 * 125.06640 * 359.97438 * 27 19 18 29 29 H 1.09008 * 109.46761 * 296.04232 * 1 2 3 30 30 H 1.08997 * 109.47854 * 56.04465 * 1 2 3 31 31 H 1.09000 * 109.46913 * 176.05161 * 1 2 3 32 32 H 1.08997 * 109.47268 * 53.95454 * 3 2 1 33 33 H 1.08999 * 109.47305 * 173.95555 * 3 2 1 34 34 H 0.97003 * 120.00192 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47486 * 306.04447 * 12 2 1 36 36 H 1.09004 * 109.46934 * 186.04743 * 12 2 1 37 37 H 0.96698 * 114.00340 * 60.00234 * 15 13 12 38 38 H 1.09002 * 109.46537 * 59.99851 * 16 13 12 39 39 H 1.08996 * 109.46874 * 299.99968 * 16 13 12 40 40 H 1.00900 * 110.99928 * 56.04435 * 17 16 13 41 41 H 1.08998 * 109.46945 * 60.00113 * 18 17 16 42 42 H 1.08999 * 109.46957 * 300.00374 * 18 17 16 43 43 H 1.07994 * 126.50109 * 0.02562 * 20 19 18 44 44 H 1.07997 * 120.12300 * 359.71971 * 22 21 20 45 45 H 1.08002 * 119.73294 * 179.97438 * 23 22 21 46 46 H 1.07999 * 119.67172 * 179.97438 * 24 23 22 47 47 H 1.08000 * 120.10946 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2984 5 1 1.0738 1.5115 -2.0484 6 6 2.0266 3.3495 -1.5285 7 7 2.7117 4.0019 -0.6150 8 14 1.5816 4.1873 -3.1376 9 1 0.8134 3.2450 -3.9905 10 1 0.7539 5.3882 -2.8581 11 1 2.8229 4.5949 -3.8434 12 6 1.9955 -0.7659 1.1376 13 6 1.6315 -2.2426 0.9703 14 1 0.5533 -2.3389 0.8433 15 8 2.2956 -2.7695 -0.1800 16 6 2.0701 -3.0199 2.2131 17 7 1.7202 -4.4375 2.0527 18 6 2.1267 -5.2166 3.2300 19 6 1.7516 -6.6623 3.0296 20 6 2.5712 -7.6119 2.5515 21 6 1.8070 -8.8613 2.5208 22 6 2.1020 -10.1700 2.1333 23 6 1.1427 -11.1381 2.2292 24 6 -0.1237 -10.8312 2.7081 25 6 -0.4359 -9.5468 3.0962 26 6 0.5257 -8.5452 3.0075 27 7 0.5252 -7.2014 3.3076 28 1 -0.2319 -6.7102 3.6631 29 1 -0.3633 0.4512 0.9234 30 1 -0.3635 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0708 32 1 1.5610 1.9274 0.8309 33 1 3.0796 1.3445 0.1082 34 1 2.9857 4.9183 -0.7767 35 1 1.5612 -0.3872 2.0628 36 1 3.0798 -0.6610 1.1755 37 1 3.2602 -2.7166 -0.1361 38 1 1.5635 -2.6179 3.0905 39 1 3.1484 -2.9236 2.3401 40 1 2.1253 -4.8169 1.2101 41 1 1.6205 -4.8295 4.1142 42 1 3.2054 -5.1358 3.3643 43 1 3.5990 -7.4798 2.2472 44 1 3.0835 -10.4152 1.7554 45 1 1.3712 -12.1501 1.9290 46 1 -0.8716 -11.6072 2.7777 47 1 -1.4238 -9.3181 3.4678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591728175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:58 Heat of formation + Delta-G solvation = 10.926336 kcal Electronic energy + Delta-G solvation = -25056.151885 eV Core-core repulsion = 21431.998717 eV Total energy + Delta-G solvation = -3624.153167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51091 -38.45755 -37.40423 -35.98017 -34.92599 -32.54049 -32.20313 -30.75451 -29.55482 -28.98292 -27.16517 -26.46315 -24.94843 -23.21019 -22.40331 -21.72024 -21.33441 -20.47708 -20.17430 -17.98863 -17.02444 -16.50911 -16.08154 -16.03905 -15.42181 -15.29502 -14.89794 -14.78100 -14.31261 -14.29808 -14.18048 -14.00509 -13.77272 -13.47248 -13.21557 -13.03364 -12.52590 -12.34217 -12.02807 -11.91088 -11.82510 -11.68734 -11.34934 -11.13508 -11.11451 -10.89724 -10.77723 -10.67315 -10.31176 -10.04517 -9.97691 -9.65260 -9.12808 -8.73673 -8.44740 -8.39666 -7.94625 -7.21134 -6.03640 -4.04474 0.85891 1.40516 2.37776 2.85105 3.31010 3.38361 3.44163 3.68910 3.91677 4.37695 4.43355 4.50722 4.63043 4.76812 4.78975 4.87519 4.97362 5.10353 5.12159 5.17868 5.20034 5.27154 5.33239 5.33770 5.46696 5.59876 5.64396 5.68905 5.72690 5.81385 6.03143 6.18057 6.20584 6.30201 6.36784 6.38200 6.49809 6.54155 6.67340 6.77077 6.92634 7.14441 7.25645 7.29072 7.31368 7.79756 7.93066 8.08735 8.19167 8.54460 9.03974 9.59888 11.07363 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033748 B = 0.001773 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.470913 B =15791.680935 C =15938.095699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.104 0.896 15 O -0.545 6.545 16 C 0.027 3.973 17 N -0.682 5.682 18 C 0.115 3.885 19 C 0.093 3.907 20 C -0.199 4.199 21 C -0.108 4.108 22 C -0.071 4.071 23 C -0.150 4.150 24 C -0.102 4.102 25 C -0.130 4.130 26 C 0.098 3.902 27 N -0.582 5.582 28 H 0.416 0.584 29 H 0.008 0.992 30 H 0.075 0.925 31 H 0.047 0.953 32 H -0.011 1.011 33 H 0.028 0.972 34 H 0.260 0.740 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.367 0.633 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.355 0.645 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.145 0.855 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.993 -27.004 11.345 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.104 4.104 13 C 0.054 3.946 14 H 0.121 0.879 15 O -0.349 6.349 16 C -0.103 4.103 17 N -0.315 5.315 18 C -0.014 4.014 19 C -0.016 4.016 20 C -0.225 4.225 21 C -0.112 4.112 22 C -0.090 4.090 23 C -0.169 4.169 24 C -0.121 4.121 25 C -0.151 4.151 26 C -0.010 4.010 27 N -0.184 5.184 28 H 0.253 0.747 29 H 0.027 0.973 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.007 0.993 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.213 0.787 38 H 0.097 0.903 39 H 0.054 0.946 40 H 0.174 0.826 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.162 0.838 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.092 -26.955 11.017 29.283 hybrid contribution 0.692 1.396 0.315 1.590 sum -2.400 -25.559 11.332 28.061 Atomic orbital electron populations 1.22262 0.88963 0.99636 1.00415 1.62024 1.06863 1.17426 1.39075 1.19751 0.95259 0.81623 0.96664 1.21215 1.34590 0.96840 1.01692 0.91712 1.25001 0.95330 0.97368 0.97051 1.69969 1.38601 1.11378 1.34081 0.86431 0.78160 0.79266 0.83514 1.19601 1.21150 1.21009 1.22710 1.00425 0.93807 0.93507 1.21989 0.98311 0.90728 0.83555 0.87874 1.86624 1.22841 1.83776 1.41651 1.22720 0.98824 0.88454 1.00296 1.60406 1.64460 1.02000 1.04681 1.20540 0.99178 0.86690 0.95006 1.20137 0.85100 0.94700 1.01635 1.21484 0.99987 0.90825 1.10232 1.19189 0.93464 0.94110 1.04467 1.20287 0.99309 0.90896 0.98510 1.20621 0.93718 0.99273 1.03279 1.20792 0.96864 0.95315 0.99135 1.20042 0.97881 0.91764 1.05371 1.18249 0.96335 0.84314 1.02060 1.41693 1.12673 1.06955 1.57105 0.74727 0.97327 0.90662 0.93402 0.99296 0.95386 0.93020 0.95342 0.91252 0.78720 0.90258 0.94616 0.82552 0.90018 0.92379 0.83760 0.86140 0.86162 0.85888 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.14 60.06 0.55 1.26 16 2 N -0.53 -11.41 4.70 -244.37 -1.15 -12.56 16 3 C 0.19 5.02 4.72 -4.98 -0.02 4.99 16 4 C -0.50 -14.32 8.46 -34.44 -0.29 -14.61 16 5 H 0.06 1.84 7.12 -52.49 -0.37 1.47 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.03 0.43 4.60 -3.82 -0.02 0.41 16 13 C 0.11 1.57 3.19 -26.73 -0.09 1.49 16 14 H 0.10 1.57 6.34 -51.93 -0.33 1.24 16 15 O -0.55 -8.03 12.62 -35.23 -0.44 -8.48 16 16 C 0.03 0.28 5.39 -3.83 -0.02 0.26 16 17 N -0.68 -6.78 6.49 -115.06 -0.75 -7.53 16 18 C 0.12 0.94 6.19 -4.97 -0.03 0.91 16 19 C 0.09 0.87 6.60 -81.77 -0.54 0.33 16 20 C -0.20 -1.98 10.95 -37.67 -0.41 -2.39 16 21 C -0.11 -1.16 6.37 -105.14 -0.67 -1.83 16 22 C -0.07 -0.66 10.05 -39.64 -0.40 -1.06 16 23 C -0.15 -1.23 9.97 -39.94 -0.40 -1.63 16 24 C -0.10 -0.82 10.01 -39.54 -0.40 -1.21 16 25 C -0.13 -1.15 10.08 -39.43 -0.40 -1.54 16 26 C 0.10 1.01 7.28 -83.99 -0.61 0.40 16 27 N -0.58 -5.31 6.07 -6.95 -0.04 -5.36 16 28 H 0.42 2.96 8.96 -40.82 -0.37 2.60 16 29 H 0.01 0.16 8.14 -51.92 -0.42 -0.26 16 30 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 31 H 0.05 0.83 6.37 -51.93 -0.33 0.50 16 32 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 33 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.07 1.15 7.93 -51.93 -0.41 0.73 16 37 H 0.37 4.28 9.05 45.56 0.41 4.69 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.35 3.77 8.12 -39.29 -0.32 3.45 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 45 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -32.79 386.61 -11.37 -44.15 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.69 Total: 6.04 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -3.84 Total: -12.81 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -1.20 Total: -51.52 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.44 Total: -8.48 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.79 -11.37 -44.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591728175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.080 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds