Wall clock time and date at job start Tue Mar 31 2020 11:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99852 * 2 1 4 4 C 1.50697 * 109.47017 * 293.95433 * 3 2 1 5 5 H 1.08000 * 120.00271 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99988 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00287 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47165 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47102 * 119.99922 * 8 6 4 11 11 H 1.48498 * 109.47574 * 240.00332 * 8 6 4 12 12 C 1.46898 * 111.00361 * 123.95310 * 2 1 3 13 13 C 1.53000 * 109.47031 * 66.04808 * 12 2 1 14 14 H 1.08996 * 109.47157 * 304.99782 * 13 12 2 15 15 O 1.42896 * 109.47206 * 64.99962 * 13 12 2 16 16 C 1.53005 * 109.47248 * 184.99987 * 13 12 2 17 17 N 1.46893 * 109.47109 * 179.97438 * 16 13 12 18 18 C 1.46903 * 111.00040 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47343 * 179.97438 * 18 17 16 20 20 C 1.34242 * 125.03209 * 94.99829 * 19 18 17 21 21 C 1.46486 * 106.99231 * 180.02562 * 20 19 18 22 22 C 1.39635 * 134.02433 * 180.02562 * 21 20 19 23 23 C 1.36628 * 119.75966 * 179.97438 * 22 21 20 24 24 C 1.38831 * 120.53083 * 0.03734 * 23 22 21 25 25 C 1.37755 * 120.66440 * 359.94200 * 24 23 22 26 26 C 1.39127 * 119.78052 * 0.03895 * 25 24 23 27 27 N 1.36827 * 125.03383 * 275.02948 * 19 18 17 28 28 H 0.96998 * 125.06640 * 359.97438 * 27 19 18 29 29 H 1.09008 * 109.46761 * 296.04232 * 1 2 3 30 30 H 1.08997 * 109.47854 * 56.04465 * 1 2 3 31 31 H 1.09000 * 109.46913 * 176.05161 * 1 2 3 32 32 H 1.08997 * 109.47268 * 53.95454 * 3 2 1 33 33 H 1.08999 * 109.47305 * 173.95555 * 3 2 1 34 34 H 0.97003 * 120.00192 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47486 * 306.04447 * 12 2 1 36 36 H 1.09004 * 109.46934 * 186.04743 * 12 2 1 37 37 H 0.96698 * 114.00340 * 60.00234 * 15 13 12 38 38 H 1.09002 * 109.46537 * 59.99851 * 16 13 12 39 39 H 1.08996 * 109.46874 * 299.99968 * 16 13 12 40 40 H 1.00900 * 110.99928 * 56.04435 * 17 16 13 41 41 H 1.08998 * 109.46945 * 60.00113 * 18 17 16 42 42 H 1.08999 * 109.46957 * 300.00374 * 18 17 16 43 43 H 1.07994 * 126.50109 * 0.02562 * 20 19 18 44 44 H 1.07997 * 120.12300 * 359.71971 * 22 21 20 45 45 H 1.08002 * 119.73294 * 179.97438 * 23 22 21 46 46 H 1.07999 * 119.67172 * 179.97438 * 24 23 22 47 47 H 1.08000 * 120.10946 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2984 5 1 1.0738 1.5115 -2.0484 6 6 2.0266 3.3495 -1.5285 7 7 2.7117 4.0019 -0.6150 8 14 1.5816 4.1873 -3.1376 9 1 0.8134 3.2450 -3.9905 10 1 0.7539 5.3882 -2.8581 11 1 2.8229 4.5949 -3.8434 12 6 1.9955 -0.7659 1.1376 13 6 1.6315 -2.2426 0.9703 14 1 0.5533 -2.3389 0.8433 15 8 2.2956 -2.7695 -0.1800 16 6 2.0701 -3.0199 2.2131 17 7 1.7202 -4.4375 2.0527 18 6 2.1267 -5.2166 3.2300 19 6 1.7516 -6.6623 3.0296 20 6 2.5712 -7.6119 2.5515 21 6 1.8070 -8.8613 2.5208 22 6 2.1020 -10.1700 2.1333 23 6 1.1427 -11.1381 2.2292 24 6 -0.1237 -10.8312 2.7081 25 6 -0.4359 -9.5468 3.0962 26 6 0.5257 -8.5452 3.0075 27 7 0.5252 -7.2014 3.3076 28 1 -0.2319 -6.7102 3.6631 29 1 -0.3633 0.4512 0.9234 30 1 -0.3635 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0708 32 1 1.5610 1.9274 0.8309 33 1 3.0796 1.3445 0.1082 34 1 2.9857 4.9183 -0.7767 35 1 1.5612 -0.3872 2.0628 36 1 3.0798 -0.6610 1.1755 37 1 3.2602 -2.7166 -0.1361 38 1 1.5635 -2.6179 3.0905 39 1 3.1484 -2.9236 2.3401 40 1 2.1253 -4.8169 1.2101 41 1 1.6205 -4.8295 4.1142 42 1 3.2054 -5.1358 3.3643 43 1 3.5990 -7.4798 2.2472 44 1 3.0835 -10.4152 1.7554 45 1 1.3712 -12.1501 1.9290 46 1 -0.8716 -11.6072 2.7777 47 1 -1.4238 -9.3181 3.4678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591728175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:57 Heat of formation + Delta-G solvation = -13.802334 kcal Electronic energy + Delta-G solvation = -25057.224200 eV Core-core repulsion = 21431.998717 eV Total energy + Delta-G solvation = -3625.225483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.17007 -39.63882 -38.15328 -37.34476 -35.91146 -34.62930 -32.87849 -31.74043 -30.32751 -29.99633 -28.95302 -27.65542 -26.25229 -24.55563 -23.07482 -22.64783 -22.35236 -21.80469 -21.13264 -18.66437 -18.57751 -17.78386 -17.23717 -16.96580 -16.70465 -16.32775 -16.03679 -15.91978 -15.68928 -15.31071 -15.10058 -14.84939 -14.73382 -14.63693 -14.40357 -13.92329 -13.79648 -13.65077 -13.26283 -13.01702 -12.93789 -12.72227 -12.57596 -12.52696 -12.45700 -12.38156 -12.31314 -12.01325 -11.73519 -11.62832 -11.40264 -10.76547 -10.63967 -10.63226 -9.47536 -9.07866 -8.96125 -8.61304 -8.21834 -6.31444 0.20150 0.74042 1.40072 1.40910 1.54761 1.67925 2.21376 2.39632 2.98375 3.03089 3.10802 3.45820 3.69393 3.72043 3.88346 4.00457 4.11259 4.21163 4.25681 4.29550 4.33955 4.45052 4.49122 4.55865 4.57671 4.58460 4.69011 4.70398 4.72720 4.80799 5.03868 5.05823 5.07464 5.15695 5.17154 5.19885 5.31981 5.57935 5.64305 5.73056 5.84113 5.85781 5.92514 6.04915 6.27347 6.31581 6.35406 6.63783 6.67927 6.84903 6.96987 7.38351 8.89204 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033748 B = 0.001773 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.470913 B =15791.680935 C =15938.095699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.025 3.975 13 C 0.127 3.873 14 H 0.092 0.908 15 O -0.562 6.562 16 C 0.039 3.961 17 N -0.688 5.688 18 C 0.121 3.879 19 C 0.090 3.910 20 C -0.216 4.216 21 C -0.136 4.136 22 C -0.088 4.088 23 C -0.154 4.154 24 C -0.106 4.106 25 C -0.141 4.141 26 C 0.077 3.923 27 N -0.581 5.581 28 H 0.423 0.577 29 H 0.012 0.988 30 H 0.053 0.947 31 H 0.075 0.925 32 H -0.038 1.038 33 H 0.005 0.995 34 H 0.264 0.736 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.380 0.620 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.350 0.650 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.154 0.846 44 H 0.132 0.868 45 H 0.143 0.857 46 H 0.148 0.852 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.522 -28.283 11.302 30.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.265 5.265 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.105 4.105 13 C 0.068 3.932 14 H 0.110 0.890 15 O -0.368 6.368 16 C -0.090 4.090 17 N -0.321 5.321 18 C -0.008 4.008 19 C -0.019 4.019 20 C -0.242 4.242 21 C -0.141 4.141 22 C -0.107 4.107 23 C -0.173 4.173 24 C -0.125 4.125 25 C -0.162 4.162 26 C -0.030 4.030 27 N -0.184 5.184 28 H 0.261 0.739 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.093 0.907 32 H -0.021 1.021 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.228 0.772 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.170 0.830 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.172 0.828 44 H 0.150 0.850 45 H 0.160 0.840 46 H 0.166 0.834 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.627 -28.256 10.992 30.534 hybrid contribution 0.857 1.695 0.364 1.934 sum -2.771 -26.560 11.355 29.018 Atomic orbital electron populations 1.22222 0.87951 1.00988 0.99641 1.61930 1.07896 1.14907 1.41798 1.19402 0.93713 0.83936 0.94882 1.21508 1.34729 0.97494 1.02447 0.92185 1.25902 0.95040 0.98042 1.00693 1.70081 1.39426 1.11863 1.36088 0.85336 0.78107 0.78154 0.79026 1.18970 1.20322 1.20292 1.22835 1.00339 0.95242 0.92048 1.21793 0.97642 0.88875 0.84934 0.89044 1.86585 1.24153 1.83666 1.42363 1.22514 0.99677 0.88360 0.98482 1.60365 1.64803 1.01769 1.05180 1.20555 1.00056 0.85688 0.94478 1.20313 0.85101 0.95134 1.01384 1.21727 1.00689 0.90967 1.10790 1.19550 0.94126 0.94983 1.05412 1.20562 1.00333 0.90832 0.98923 1.20968 0.93610 1.00126 1.02562 1.21175 0.97417 0.95686 0.98196 1.20361 0.98468 0.91893 1.05438 1.18564 0.96769 0.85007 1.02697 1.41731 1.12934 1.06777 1.56946 0.73880 0.96953 0.92774 0.90676 1.02050 0.97650 0.92674 0.94732 0.91191 0.77226 0.89371 0.93246 0.83025 0.88952 0.91102 0.82833 0.85015 0.83968 0.83407 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.14 127.69 1.17 2.75 16 2 N -0.54 -23.41 4.70 -927.06 -4.36 -27.77 16 3 C 0.21 11.09 4.72 85.56 0.40 11.49 16 4 C -0.52 -30.16 8.46 25.60 0.22 -29.94 16 5 H 0.06 3.44 7.12 -2.91 -0.02 3.42 16 6 C 0.00 0.06 5.46 84.65 0.46 0.53 16 7 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 8 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.02 0.81 4.60 86.30 0.40 1.21 16 13 C 0.13 3.33 3.19 30.60 0.10 3.43 16 14 H 0.09 2.63 6.34 -2.39 -0.02 2.61 16 15 O -0.56 -15.83 12.62 -148.98 -1.88 -17.71 16 16 C 0.04 0.74 5.39 86.31 0.47 1.20 16 17 N -0.69 -12.39 6.49 -517.93 -3.36 -15.75 16 18 C 0.12 1.75 6.19 85.56 0.53 2.28 16 19 C 0.09 1.59 6.60 40.87 0.27 1.86 16 20 C -0.22 -4.19 10.95 23.51 0.26 -3.94 16 21 C -0.14 -2.89 6.37 -20.20 -0.13 -3.02 16 22 C -0.09 -1.59 10.05 22.23 0.22 -1.37 16 23 C -0.15 -2.32 9.97 22.03 0.22 -2.10 16 24 C -0.11 -1.53 10.01 22.30 0.22 -1.31 16 25 C -0.14 -2.34 10.08 22.37 0.23 -2.12 16 26 C 0.08 1.55 7.28 39.03 0.28 1.84 16 27 N -0.58 -10.17 6.07 -175.91 -1.07 -11.24 16 28 H 0.42 5.65 8.96 -92.71 -0.83 4.82 16 29 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.05 2.33 6.76 -2.39 -0.02 2.32 16 31 H 0.07 2.53 6.37 -2.39 -0.02 2.52 16 32 H -0.04 -2.21 8.12 -2.39 -0.02 -2.23 16 33 H 0.01 0.31 7.93 -2.39 -0.02 0.29 16 34 H 0.26 14.92 8.31 -92.71 -0.77 14.14 16 35 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 36 H 0.07 2.28 7.93 -2.38 -0.02 2.26 16 37 H 0.38 8.37 9.05 -74.06 -0.67 7.70 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.35 6.92 8.12 -89.69 -0.73 6.19 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 43 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 44 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 45 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 46 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 47 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -70.79 386.61 -4.28 -75.07 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -1.24 Total: 23.82 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 5.31 Total: -17.21 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -8.50 Total: -110.77 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -1.88 Total: -17.71 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -70.79 -4.28 -75.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591728175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.268 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds