Wall clock time and date at job start Tue Mar 31 2020 11:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 110.99898 * 2 1 4 4 C 1.50700 * 109.47280 * 66.05018 * 3 2 1 5 5 H 1.07992 * 120.00060 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00105 * 180.02562 * 4 3 2 7 7 N 1.31523 * 119.99864 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00117 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47231 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47485 * 119.99644 * 8 6 4 11 11 H 1.48504 * 109.47129 * 239.99500 * 8 6 4 12 12 C 1.46904 * 111.00003 * 236.04312 * 2 1 3 13 13 C 1.52996 * 109.47144 * 293.95721 * 12 2 1 14 14 H 1.09004 * 109.47216 * 59.99822 * 13 12 2 15 15 O 1.42901 * 109.47053 * 299.99502 * 13 12 2 16 16 C 1.53008 * 109.47129 * 179.97438 * 13 12 2 17 17 N 1.46898 * 109.47038 * 184.99635 * 16 13 12 18 18 C 1.46904 * 110.99765 * 180.02562 * 17 16 13 19 19 C 1.50697 * 109.47289 * 180.02562 * 18 17 16 20 20 C 1.34233 * 125.03310 * 265.00694 * 19 18 17 21 21 C 1.46493 * 106.99292 * 179.97438 * 20 19 18 22 22 C 1.39635 * 134.02690 * 180.02562 * 21 20 19 23 23 C 1.36628 * 119.75966 * 179.97438 * 22 21 20 24 24 C 1.38829 * 120.53083 * 359.97438 * 23 22 21 25 25 C 1.37756 * 120.66464 * 0.03446 * 24 23 22 26 26 C 1.39121 * 119.77705 * 359.97438 * 25 24 23 27 27 N 1.36828 * 125.03082 * 85.00019 * 19 18 17 28 28 H 0.96998 * 125.06631 * 359.97438 * 27 19 18 29 29 H 1.09003 * 109.46894 * 183.95840 * 1 2 3 30 30 H 1.09002 * 109.46996 * 303.95282 * 1 2 3 31 31 H 1.08993 * 109.47311 * 63.95265 * 1 2 3 32 32 H 1.09006 * 109.47189 * 186.04903 * 3 2 1 33 33 H 1.09004 * 109.47398 * 306.04483 * 3 2 1 34 34 H 0.96996 * 119.99734 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.47236 * 173.94941 * 12 2 1 36 36 H 1.09006 * 109.46619 * 53.95358 * 12 2 1 37 37 H 0.96696 * 113.99949 * 300.00106 * 15 13 12 38 38 H 1.09001 * 109.46438 * 64.99930 * 16 13 12 39 39 H 1.08999 * 109.46907 * 305.00078 * 16 13 12 40 40 H 1.00900 * 110.99951 * 56.04974 * 17 16 13 41 41 H 1.09007 * 109.46731 * 60.00091 * 18 17 16 42 42 H 1.09002 * 109.47221 * 300.00724 * 18 17 16 43 43 H 1.07996 * 126.50833 * 359.96698 * 20 19 18 44 44 H 1.07997 * 120.12300 * 359.69249 * 22 21 20 45 45 H 1.08002 * 119.73294 * 179.97438 * 23 22 21 46 46 H 1.07999 * 119.67158 * 180.02562 * 24 23 22 47 47 H 1.07995 * 120.10503 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0741 1.5115 2.0485 6 6 2.0268 3.3494 1.5285 7 7 2.7119 4.0019 0.6149 8 14 1.5819 4.1872 3.1377 9 1 0.8139 3.2449 3.9905 10 1 2.8233 4.5948 3.8434 11 1 0.7544 5.3882 2.8582 12 6 1.9955 -0.7661 -1.1376 13 6 1.6314 -2.2426 -0.9703 14 1 0.5471 -2.3475 -0.9323 15 8 2.2009 -2.7392 0.2426 16 6 2.1792 -3.0404 -2.1555 17 7 1.7287 -4.4351 -2.0570 18 6 2.2373 -5.2332 -3.1806 19 6 1.7552 -6.6546 -3.0461 20 6 2.4489 -7.6529 -2.4768 21 6 1.6149 -8.8546 -2.5585 22 6 1.7795 -10.1796 -2.1498 23 6 0.7851 -11.0882 -2.3783 24 6 -0.3885 -10.7047 -3.0132 25 6 -0.5715 -9.4028 -3.4247 26 6 0.4280 -8.4610 -3.2025 27 7 0.5455 -7.1187 -3.4859 28 1 -0.1292 -6.5818 -3.9302 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3633 0.5740 0.8525 31 1 -0.3633 0.4512 -0.9232 32 1 3.0797 1.3444 -0.1083 33 1 1.5611 1.9274 -0.8309 34 1 2.9865 4.9180 0.7768 35 1 3.0797 -0.6611 -1.1757 36 1 1.5610 -0.3873 -2.0628 37 1 3.1652 -2.6772 0.2786 38 1 3.2687 -3.0087 -2.1422 39 1 1.8143 -2.6055 -3.0859 40 1 0.7225 -4.4871 -2.0023 41 1 3.3272 -5.2166 -3.1741 42 1 1.8732 -4.8136 -4.1185 43 1 3.4347 -7.5835 -2.0414 44 1 2.6914 -10.4862 -1.6591 45 1 0.9130 -12.1131 -2.0625 46 1 -1.1657 -11.4343 -3.1864 47 1 -1.4878 -9.1145 -3.9181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591728176.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:01 Heat of formation + Delta-G solvation = 13.785079 kcal Electronic energy + Delta-G solvation = -25051.493155 eV Core-core repulsion = 21427.463952 eV Total energy + Delta-G solvation = -3624.029203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.52363 -38.37843 -37.41665 -35.95346 -34.90184 -32.52151 -32.22152 -30.74595 -29.55780 -28.97020 -27.17558 -26.45938 -24.90045 -23.24740 -22.47343 -21.65233 -21.40191 -20.51431 -20.15328 -18.02548 -16.68506 -16.55365 -16.42085 -15.81734 -15.44518 -15.19578 -15.01276 -14.73785 -14.41446 -14.29563 -14.24842 -14.07383 -13.56337 -13.44604 -13.15519 -12.95280 -12.55929 -12.29130 -12.07707 -11.91448 -11.83172 -11.73170 -11.34596 -11.14463 -11.11356 -10.89844 -10.75630 -10.65920 -10.31545 -9.98966 -9.96128 -9.58267 -9.10991 -8.70752 -8.44501 -8.39387 -7.94087 -7.21110 -6.03480 -4.04287 0.85853 1.39377 2.39599 2.79720 3.31215 3.38614 3.44444 3.68558 3.91399 4.33093 4.42656 4.49996 4.67015 4.77885 4.80568 4.83131 4.91076 5.10334 5.12729 5.20695 5.23171 5.28275 5.33340 5.33879 5.50629 5.57792 5.64142 5.65379 5.77316 5.82124 6.02877 6.17210 6.20739 6.26737 6.36358 6.37226 6.50288 6.56920 6.64728 6.75073 6.91812 7.03916 7.24364 7.25764 7.31069 7.80216 8.04016 8.14317 8.20103 8.54620 9.04229 9.60079 11.07540 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.034118 B = 0.001771 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.483314 B =15809.162271 C =15951.181855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.528 5.528 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.024 3.976 13 C 0.118 3.882 14 H 0.090 0.910 15 O -0.534 6.534 16 C 0.026 3.974 17 N -0.672 5.672 18 C 0.119 3.881 19 C 0.083 3.917 20 C -0.178 4.178 21 C -0.109 4.109 22 C -0.070 4.070 23 C -0.150 4.150 24 C -0.101 4.101 25 C -0.132 4.132 26 C 0.099 3.901 27 N -0.594 5.594 28 H 0.412 0.588 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.007 0.993 32 H 0.029 0.971 33 H -0.011 1.011 34 H 0.260 0.740 35 H 0.071 0.929 36 H 0.026 0.974 37 H 0.369 0.631 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.341 0.659 41 H 0.099 0.901 42 H 0.038 0.962 43 H 0.147 0.853 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.157 -26.651 -12.187 29.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.252 5.252 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.106 4.106 13 C 0.057 3.943 14 H 0.108 0.892 15 O -0.338 6.338 16 C -0.104 4.104 17 N -0.303 5.303 18 C -0.010 4.010 19 C -0.024 4.024 20 C -0.203 4.203 21 C -0.114 4.114 22 C -0.088 4.088 23 C -0.169 4.169 24 C -0.120 4.120 25 C -0.152 4.152 26 C -0.008 4.008 27 N -0.197 5.197 28 H 0.248 0.752 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.025 0.975 32 H 0.047 0.953 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.216 0.784 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.158 0.842 41 H 0.118 0.882 42 H 0.056 0.944 43 H 0.165 0.835 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.086 -26.872 -11.274 29.304 hybrid contribution -0.813 1.773 -1.182 2.281 sum -3.899 -25.099 -12.457 28.290 Atomic orbital electron populations 1.22246 0.89046 0.99546 1.00336 1.62007 1.06788 1.17387 1.39041 1.19756 0.95300 0.81610 0.96642 1.21214 1.34594 0.96828 1.01686 0.91700 1.25003 0.95334 0.97369 0.97052 1.69972 1.38595 1.11399 1.34072 0.86429 0.78169 0.79247 0.83515 1.19596 1.20992 1.21174 1.22726 1.00612 0.93867 0.93368 1.21835 0.98086 0.90763 0.83580 0.89206 1.86599 1.24968 1.84886 1.37339 1.22794 1.01511 0.87685 0.98400 1.60393 1.16487 1.10372 1.43054 1.20568 1.01319 0.86713 0.92398 1.20135 0.86152 0.95469 1.00654 1.21482 1.01053 0.90411 1.07393 1.19246 0.94635 0.94258 1.03216 1.20307 0.98973 0.91065 0.98468 1.20626 0.94382 0.99551 1.02379 1.20791 0.97719 0.94890 0.98633 1.20024 0.97785 0.92390 1.05042 1.18223 0.97035 0.84150 1.01431 1.41732 1.16716 1.07832 1.53415 0.75191 0.93520 0.90649 0.97468 0.95327 0.99356 0.93024 0.91081 0.95602 0.78436 0.90186 0.94516 0.84160 0.88247 0.94406 0.83487 0.86044 0.86136 0.85900 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.14 60.06 0.55 1.28 16 2 N -0.53 -11.37 4.62 -244.37 -1.13 -12.50 16 3 C 0.19 5.01 4.72 -4.98 -0.02 4.99 16 4 C -0.50 -14.31 8.46 -34.44 -0.29 -14.61 16 5 H 0.06 1.84 7.12 -52.49 -0.37 1.47 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.02 0.41 4.62 -3.82 -0.02 0.39 16 13 C 0.12 1.63 3.01 -26.73 -0.08 1.55 16 14 H 0.09 1.29 6.55 -51.93 -0.34 0.95 16 15 O -0.53 -8.42 13.15 -35.23 -0.46 -8.89 16 16 C 0.03 0.27 5.32 -3.82 -0.02 0.25 16 17 N -0.67 -6.69 6.44 -115.05 -0.74 -7.43 16 18 C 0.12 0.98 6.19 -4.98 -0.03 0.94 16 19 C 0.08 0.78 6.59 -81.78 -0.54 0.24 16 20 C -0.18 -1.84 10.95 -37.67 -0.41 -2.25 16 21 C -0.11 -1.18 6.37 -105.14 -0.67 -1.85 16 22 C -0.07 -0.65 10.05 -39.64 -0.40 -1.05 16 23 C -0.15 -1.24 9.97 -39.94 -0.40 -1.63 16 24 C -0.10 -0.80 10.01 -39.54 -0.40 -1.20 16 25 C -0.13 -1.14 10.08 -39.43 -0.40 -1.54 16 26 C 0.10 1.00 7.28 -83.99 -0.61 0.39 16 27 N -0.59 -5.12 6.07 -6.96 -0.04 -5.16 16 28 H 0.41 2.52 8.96 -40.82 -0.37 2.15 16 29 H 0.05 0.81 6.47 -51.93 -0.34 0.47 16 30 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 31 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 33 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.07 1.18 7.93 -51.93 -0.41 0.76 16 36 H 0.03 0.43 8.12 -51.93 -0.42 0.00 16 37 H 0.37 4.86 9.05 45.56 0.41 5.27 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.34 3.36 8.72 -39.29 -0.34 3.01 16 41 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -33.20 387.71 -11.38 -44.58 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.73 Total: 5.51 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -3.84 Total: -12.68 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -1.18 Total: -51.15 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.46 Total: -8.89 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.20 -11.38 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591728176.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.363 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds