Wall clock time and date at job start Tue Mar 31 2020 11:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 110.99898 * 2 1 4 4 C 1.50700 * 109.47280 * 66.05018 * 3 2 1 5 5 H 1.07992 * 120.00060 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00105 * 180.02562 * 4 3 2 7 7 N 1.31523 * 119.99864 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00117 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47231 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47485 * 119.99644 * 8 6 4 11 11 H 1.48504 * 109.47129 * 239.99500 * 8 6 4 12 12 C 1.46904 * 111.00003 * 236.04312 * 2 1 3 13 13 C 1.52996 * 109.47144 * 293.95721 * 12 2 1 14 14 H 1.09004 * 109.47216 * 59.99822 * 13 12 2 15 15 O 1.42901 * 109.47053 * 299.99502 * 13 12 2 16 16 C 1.53008 * 109.47129 * 179.97438 * 13 12 2 17 17 N 1.46898 * 109.47038 * 184.99635 * 16 13 12 18 18 C 1.46904 * 110.99765 * 180.02562 * 17 16 13 19 19 C 1.50697 * 109.47289 * 180.02562 * 18 17 16 20 20 C 1.34233 * 125.03310 * 265.00694 * 19 18 17 21 21 C 1.46493 * 106.99292 * 179.97438 * 20 19 18 22 22 C 1.39635 * 134.02690 * 180.02562 * 21 20 19 23 23 C 1.36628 * 119.75966 * 179.97438 * 22 21 20 24 24 C 1.38829 * 120.53083 * 359.97438 * 23 22 21 25 25 C 1.37756 * 120.66464 * 0.03446 * 24 23 22 26 26 C 1.39121 * 119.77705 * 359.97438 * 25 24 23 27 27 N 1.36828 * 125.03082 * 85.00019 * 19 18 17 28 28 H 0.96998 * 125.06631 * 359.97438 * 27 19 18 29 29 H 1.09003 * 109.46894 * 183.95840 * 1 2 3 30 30 H 1.09002 * 109.46996 * 303.95282 * 1 2 3 31 31 H 1.08993 * 109.47311 * 63.95265 * 1 2 3 32 32 H 1.09006 * 109.47189 * 186.04903 * 3 2 1 33 33 H 1.09004 * 109.47398 * 306.04483 * 3 2 1 34 34 H 0.96996 * 119.99734 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.47236 * 173.94941 * 12 2 1 36 36 H 1.09006 * 109.46619 * 53.95358 * 12 2 1 37 37 H 0.96696 * 113.99949 * 300.00106 * 15 13 12 38 38 H 1.09001 * 109.46438 * 64.99930 * 16 13 12 39 39 H 1.08999 * 109.46907 * 305.00078 * 16 13 12 40 40 H 1.00900 * 110.99951 * 56.04974 * 17 16 13 41 41 H 1.09007 * 109.46731 * 60.00091 * 18 17 16 42 42 H 1.09002 * 109.47221 * 300.00724 * 18 17 16 43 43 H 1.07996 * 126.50833 * 359.96698 * 20 19 18 44 44 H 1.07997 * 120.12300 * 359.69249 * 22 21 20 45 45 H 1.08002 * 119.73294 * 179.97438 * 23 22 21 46 46 H 1.07999 * 119.67158 * 180.02562 * 24 23 22 47 47 H 1.07995 * 120.10503 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0741 1.5115 2.0485 6 6 2.0268 3.3494 1.5285 7 7 2.7119 4.0019 0.6149 8 14 1.5819 4.1872 3.1377 9 1 0.8139 3.2449 3.9905 10 1 2.8233 4.5948 3.8434 11 1 0.7544 5.3882 2.8582 12 6 1.9955 -0.7661 -1.1376 13 6 1.6314 -2.2426 -0.9703 14 1 0.5471 -2.3475 -0.9323 15 8 2.2009 -2.7392 0.2426 16 6 2.1792 -3.0404 -2.1555 17 7 1.7287 -4.4351 -2.0570 18 6 2.2373 -5.2332 -3.1806 19 6 1.7552 -6.6546 -3.0461 20 6 2.4489 -7.6529 -2.4768 21 6 1.6149 -8.8546 -2.5585 22 6 1.7795 -10.1796 -2.1498 23 6 0.7851 -11.0882 -2.3783 24 6 -0.3885 -10.7047 -3.0132 25 6 -0.5715 -9.4028 -3.4247 26 6 0.4280 -8.4610 -3.2025 27 7 0.5455 -7.1187 -3.4859 28 1 -0.1292 -6.5818 -3.9302 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3633 0.5740 0.8525 31 1 -0.3633 0.4512 -0.9232 32 1 3.0797 1.3444 -0.1083 33 1 1.5611 1.9274 -0.8309 34 1 2.9865 4.9180 0.7768 35 1 3.0797 -0.6611 -1.1757 36 1 1.5610 -0.3873 -2.0628 37 1 3.1652 -2.6772 0.2786 38 1 3.2687 -3.0087 -2.1422 39 1 1.8143 -2.6055 -3.0859 40 1 0.7225 -4.4871 -2.0023 41 1 3.3272 -5.2166 -3.1741 42 1 1.8732 -4.8136 -4.1185 43 1 3.4347 -7.5835 -2.0414 44 1 2.6914 -10.4862 -1.6591 45 1 0.9130 -12.1131 -2.0625 46 1 -1.1657 -11.4343 -3.1864 47 1 -1.4878 -9.1145 -3.9181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591728176.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:00 Heat of formation + Delta-G solvation = -11.383038 kcal Electronic energy + Delta-G solvation = -25052.584526 eV Core-core repulsion = 21427.463952 eV Total energy + Delta-G solvation = -3625.120575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.18109 -39.57746 -38.17125 -37.28031 -35.94667 -34.61221 -32.89333 -31.72514 -30.31060 -30.01213 -28.96229 -27.64835 -26.22149 -24.55978 -23.12918 -22.72731 -22.30390 -21.78174 -21.18205 -18.68909 -18.57163 -17.57578 -17.24574 -16.95661 -16.78828 -16.27261 -16.01758 -15.87072 -15.81503 -15.28752 -15.09310 -15.03873 -14.71959 -14.67227 -14.25754 -13.86297 -13.82122 -13.46230 -13.26027 -13.07035 -12.92116 -12.74058 -12.59721 -12.55040 -12.46955 -12.38735 -12.34629 -12.00334 -11.73916 -11.61842 -11.37805 -10.70256 -10.63004 -10.60589 -9.43731 -9.07373 -8.95291 -8.61011 -8.21665 -6.31223 0.20114 0.73259 1.40104 1.41167 1.54935 1.68713 2.17175 2.39813 2.98047 3.03437 3.10965 3.46241 3.65379 3.77839 3.89365 3.93762 4.11276 4.20948 4.25944 4.30757 4.34327 4.43450 4.48306 4.52584 4.59124 4.61400 4.67872 4.71367 4.71887 4.78053 5.04748 5.06106 5.10574 5.14852 5.17481 5.20298 5.31203 5.58120 5.64491 5.72801 5.83767 5.87951 5.90318 6.05156 6.26288 6.29354 6.32741 6.64322 6.66479 6.85312 7.06611 7.38573 8.89379 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.034118 B = 0.001771 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.483314 B =15809.162271 C =15951.181855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.540 5.540 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.024 3.976 13 C 0.129 3.871 14 H 0.088 0.912 15 O -0.555 6.555 16 C 0.039 3.961 17 N -0.682 5.682 18 C 0.126 3.874 19 C 0.085 3.915 20 C -0.203 4.203 21 C -0.138 4.138 22 C -0.088 4.088 23 C -0.154 4.154 24 C -0.105 4.105 25 C -0.140 4.140 26 C 0.080 3.920 27 N -0.588 5.588 28 H 0.422 0.578 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.011 0.989 32 H 0.005 0.995 33 H -0.038 1.038 34 H 0.264 0.736 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.379 0.621 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.341 0.659 41 H 0.105 0.895 42 H 0.055 0.945 43 H 0.150 0.850 44 H 0.131 0.869 45 H 0.142 0.858 46 H 0.149 0.851 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.090 -27.828 -12.370 30.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.264 5.264 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.106 4.106 13 C 0.069 3.931 14 H 0.106 0.894 15 O -0.361 6.361 16 C -0.091 4.091 17 N -0.313 5.313 18 C -0.003 4.003 19 C -0.024 4.024 20 C -0.228 4.228 21 C -0.142 4.142 22 C -0.107 4.107 23 C -0.173 4.173 24 C -0.124 4.124 25 C -0.161 4.161 26 C -0.028 4.028 27 N -0.192 5.192 28 H 0.261 0.739 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.024 0.976 33 H -0.021 1.021 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.227 0.773 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.159 0.841 41 H 0.123 0.877 42 H 0.073 0.927 43 H 0.168 0.832 44 H 0.149 0.851 45 H 0.160 0.840 46 H 0.166 0.834 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.030 -28.071 -11.476 30.593 hybrid contribution -0.530 2.047 -1.167 2.415 sum -4.560 -26.023 -12.643 29.289 Atomic orbital electron populations 1.22210 0.87966 1.00957 0.99586 1.61911 1.07882 1.14847 1.41769 1.19405 0.93735 0.83944 0.94857 1.21508 1.34718 0.97472 1.02445 0.92184 1.25904 0.95049 0.98048 1.00685 1.70085 1.39430 1.11883 1.36076 0.85335 0.78107 0.78145 0.79034 1.18971 1.20303 1.20326 1.22843 1.00466 0.95292 0.91957 1.21727 0.98012 0.88905 0.84484 0.89437 1.86561 1.26034 1.84905 1.38552 1.22570 1.01794 0.87609 0.97102 1.60333 1.16656 1.10060 1.44252 1.20565 1.01613 0.85716 0.92451 1.20279 0.86228 0.95767 1.00107 1.21692 1.01656 0.90986 1.08514 1.19584 0.95383 0.95040 1.04225 1.20569 0.99974 0.91049 0.99092 1.20967 0.94129 1.00411 1.01752 1.21182 0.98215 0.95242 0.97804 1.20354 0.98202 0.92498 1.05040 1.18522 0.97397 0.84914 1.01950 1.41724 1.16768 1.07580 1.53125 0.73913 0.90688 0.92824 0.97002 0.97639 1.02086 0.92682 0.91158 0.94881 0.77331 0.89426 0.93101 0.84095 0.87659 0.92674 0.83218 0.85145 0.83991 0.83356 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.14 127.69 1.17 2.77 16 2 N -0.54 -23.29 4.62 -927.05 -4.28 -27.57 16 3 C 0.21 11.08 4.72 85.56 0.40 11.48 16 4 C -0.52 -30.13 8.46 25.60 0.22 -29.92 16 5 H 0.06 3.44 7.12 -2.91 -0.02 3.42 16 6 C 0.00 0.06 5.46 84.65 0.46 0.52 16 7 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 8 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.02 0.78 4.62 86.30 0.40 1.18 16 13 C 0.13 3.36 3.01 30.60 0.09 3.45 16 14 H 0.09 2.33 6.55 -2.38 -0.02 2.31 16 15 O -0.56 -16.85 13.15 -148.98 -1.96 -18.81 16 16 C 0.04 0.72 5.32 86.31 0.46 1.18 16 17 N -0.68 -12.23 6.44 -517.91 -3.33 -15.56 16 18 C 0.13 1.81 6.19 85.56 0.53 2.34 16 19 C 0.08 1.50 6.59 40.86 0.27 1.77 16 20 C -0.20 -4.19 10.95 23.51 0.26 -3.93 16 21 C -0.14 -2.98 6.37 -20.20 -0.13 -3.11 16 22 C -0.09 -1.64 10.05 22.23 0.22 -1.42 16 23 C -0.15 -2.34 9.97 22.03 0.22 -2.12 16 24 C -0.11 -1.49 10.01 22.30 0.22 -1.27 16 25 C -0.14 -2.24 10.08 22.37 0.23 -2.01 16 26 C 0.08 1.56 7.28 39.03 0.28 1.84 16 27 N -0.59 -9.52 6.07 -175.92 -1.07 -10.58 16 28 H 0.42 4.56 8.96 -92.71 -0.83 3.73 16 29 H 0.07 2.48 6.47 -2.39 -0.02 2.47 16 30 H 0.05 2.30 6.76 -2.39 -0.02 2.29 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.01 0.31 7.93 -2.38 -0.02 0.30 16 33 H -0.04 -2.22 8.12 -2.39 -0.02 -2.24 16 34 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.07 2.30 7.93 -2.39 -0.02 2.28 16 36 H 0.03 1.05 8.12 -2.38 -0.02 1.03 16 37 H 0.38 9.62 9.05 -74.06 -0.67 8.95 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.34 6.05 8.72 -89.69 -0.78 5.27 16 41 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 44 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 45 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 46 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -71.77 387.71 -4.32 -76.09 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -1.29 Total: 22.87 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 5.30 Total: -17.24 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -8.40 Total: -109.74 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -1.96 Total: -18.81 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.77 -4.32 -76.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591728176.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.704 kcal (2) G-P(sol) polarization free energy of solvation -71.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds