Wall clock time and date at job start Tue Mar 31 2020 11:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39677 * 120.00002 * 2 1 4 4 C 1.38912 * 120.07468 * 185.56053 * 3 2 1 5 5 C 1.38106 * 119.92286 * 179.76714 * 4 3 2 6 6 C 1.38284 * 120.07365 * 0.51163 * 5 4 3 7 7 C 1.38288 * 120.15299 * 359.74459 * 6 5 4 8 8 C 1.38106 * 120.07035 * 359.97438 * 7 6 5 9 9 C 1.46503 * 120.00238 * 180.02562 * 2 1 3 10 10 H 1.09003 * 110.88691 * 189.46802 * 9 2 1 11 11 C 1.55402 * 111.06735 * 313.24784 * 9 2 1 12 12 C 1.54323 * 102.82890 * 153.48588 * 11 9 2 13 13 N 1.47016 * 107.40227 * 337.97688 * 12 11 9 14 14 C 1.34774 * 125.65018 * 178.89443 * 13 12 11 15 15 O 1.21585 * 120.00379 * 179.97438 * 14 13 12 16 16 N 1.34774 * 120.00097 * 359.97438 * 14 13 12 17 17 C 1.46498 * 120.00594 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47553 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47366 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99860 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00352 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99743 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00192 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47120 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47300 * 119.99632 * 23 21 19 26 26 H 1.48497 * 109.47150 * 239.99878 * 23 21 19 27 27 C 1.47432 * 108.70346 * 358.86167 * 13 12 11 28 28 H 1.08996 * 109.46521 * 269.99838 * 1 2 3 29 29 H 1.08993 * 109.46965 * 29.99657 * 1 2 3 30 30 H 1.09001 * 109.47061 * 150.00001 * 1 2 3 31 31 H 1.08005 * 120.03820 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.95760 * 180.25256 * 5 4 3 33 33 H 1.08001 * 119.92381 * 179.72030 * 6 5 4 34 34 H 1.07991 * 119.96018 * 180.02562 * 7 6 5 35 35 H 1.07994 * 120.03265 * 179.97438 * 8 7 6 36 36 H 1.09002 * 110.69723 * 35.19344 * 11 9 2 37 37 H 1.09005 * 110.85356 * 271.84950 * 11 9 2 38 38 H 1.08997 * 109.88254 * 218.47840 * 12 11 9 39 39 H 1.09000 * 109.87803 * 97.47326 * 12 11 9 40 40 H 0.97005 * 120.00068 * 359.97438 * 16 14 13 41 41 H 1.09004 * 109.47096 * 299.99843 * 17 16 14 42 42 H 1.09004 * 109.46767 * 59.99262 * 17 16 14 43 43 H 1.09004 * 109.46935 * 300.00118 * 18 17 16 44 44 H 1.09006 * 109.47062 * 60.00074 * 18 17 16 45 45 H 0.96999 * 119.99634 * 179.97438 * 22 21 19 46 46 H 1.09002 * 110.36590 * 142.96558 * 27 13 12 47 47 H 1.08996 * 110.36720 * 265.17887 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2096 0.0000 4 6 3.5476 1.2143 -0.1165 5 6 4.2346 2.4124 -0.1210 6 6 3.5470 3.6059 0.0010 7 6 2.1694 3.6046 0.1224 8 6 1.4758 2.4104 0.1218 9 6 2.1976 -1.2687 -0.0006 10 1 3.2618 -1.1030 0.1670 11 6 1.6165 -2.2498 1.0553 12 6 1.9801 -3.6327 0.4748 13 7 2.1956 -3.4605 -0.9693 14 6 2.5513 -4.4331 -1.8318 15 8 2.7019 -4.1752 -3.0104 16 7 2.7400 -5.6916 -1.3880 17 6 3.1260 -6.7489 -2.3256 18 6 3.2747 -8.0711 -1.5703 19 6 3.6713 -9.1589 -2.5350 20 1 3.8035 -8.9301 -3.5822 21 6 3.8642 -10.4464 -2.0809 22 7 3.7026 -10.7251 -0.8058 23 14 4.3564 -11.7945 -3.2766 24 1 4.4730 -11.2257 -4.6433 25 1 5.6630 -12.3680 -2.8655 26 1 3.3238 -12.8618 -3.2716 27 6 1.9575 -2.0479 -1.3177 28 1 -0.3632 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5138 31 1 4.0856 0.2822 -0.2076 32 1 5.3105 2.4168 -0.2156 33 1 4.0870 4.5412 0.0017 34 1 1.6355 4.5386 0.2170 35 1 0.4000 2.4101 0.2171 36 1 0.5352 -2.1362 1.1327 37 1 2.0912 -2.1017 2.0253 38 1 1.1630 -4.3333 0.6467 39 1 2.8913 -4.0037 0.9440 40 1 2.6201 -5.8973 -0.4476 41 1 2.3584 -6.8526 -3.0925 42 1 4.0753 -6.4899 -2.7945 43 1 4.0426 -7.9672 -0.8037 44 1 2.3256 -8.3303 -1.1012 45 1 3.8380 -11.6309 -0.4864 46 1 2.6606 -1.7226 -2.0845 47 1 0.9323 -1.9095 -1.6609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595580144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:45 Heat of formation + Delta-G solvation = 9.364751 kcal Electronic energy + Delta-G solvation = -25727.776862 eV Core-core repulsion = 22103.555979 eV Total energy + Delta-G solvation = -3624.220883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49045 -39.54708 -37.89871 -35.60033 -34.81335 -32.85595 -31.57122 -31.12529 -29.82264 -29.59964 -28.70108 -26.33614 -24.80255 -23.37688 -22.72576 -21.87360 -21.00342 -20.17357 -19.72151 -18.29044 -17.93719 -16.53982 -16.37371 -15.81969 -15.48359 -15.33558 -14.96003 -14.76258 -14.51526 -14.34230 -14.01806 -13.87863 -13.65140 -13.44631 -13.32219 -12.92629 -12.78953 -12.59076 -12.38556 -12.28255 -11.96330 -11.79501 -11.61669 -11.22527 -11.17090 -11.05104 -10.86335 -10.61771 -10.33556 -10.12425 -9.95698 -9.57189 -9.25311 -9.15405 -8.76397 -8.47216 -8.21954 -7.58032 -6.09712 -4.12142 1.20942 1.36676 2.49187 3.03035 3.28390 3.36027 3.41610 3.52679 3.65365 4.13676 4.28998 4.39567 4.44475 4.56325 4.62559 4.76554 4.80353 4.88423 4.96182 5.04557 5.15546 5.23891 5.27544 5.33051 5.37184 5.41191 5.43688 5.50265 5.63796 5.68909 5.76118 5.79491 6.01245 6.12294 6.26902 6.38389 6.39006 6.41731 6.61911 6.76309 6.93406 6.98547 7.21112 7.24596 7.55609 7.62466 7.89576 8.24101 8.36164 8.91536 8.96972 9.52641 11.02001 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032140 B = 0.002017 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.988252 B =13879.118625 C =14134.317367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.620 5.620 3 C 0.218 3.782 4 C -0.197 4.197 5 C -0.072 4.072 6 C -0.181 4.181 7 C -0.075 4.075 8 C -0.196 4.196 9 C 0.138 3.862 10 H 0.107 0.893 11 C -0.139 4.139 12 C 0.100 3.900 13 N -0.642 5.642 14 C 0.718 3.282 15 O -0.593 6.593 16 N -0.735 5.735 17 C 0.139 3.861 18 C 0.013 3.987 19 C -0.519 4.519 20 H 0.060 0.940 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.897 3.103 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.116 3.884 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.393 0.607 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.261 0.739 46 H 0.080 0.920 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 27.297 8.073 29.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.330 5.330 3 C 0.117 3.883 4 C -0.219 4.219 5 C -0.091 4.091 6 C -0.201 4.201 7 C -0.093 4.093 8 C -0.219 4.219 9 C 0.032 3.968 10 H 0.125 0.875 11 C -0.178 4.178 12 C -0.023 4.023 13 N -0.382 5.382 14 C 0.419 3.581 15 O -0.472 6.472 16 N -0.388 5.388 17 C 0.017 3.983 18 C -0.024 4.024 19 C -0.558 4.558 20 H 0.079 0.921 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.210 1.210 27 C -0.009 4.009 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.226 0.774 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.660 27.067 7.233 28.583 hybrid contribution 0.124 -1.007 -0.018 1.015 sum -5.535 26.060 7.216 27.602 Atomic orbital electron populations 1.21640 0.79484 1.02896 1.01249 1.46253 1.04763 1.02104 1.79875 1.17831 0.91238 0.85504 0.93764 1.20775 0.92399 0.98834 1.09853 1.20918 0.99544 0.91968 0.96645 1.20916 0.94416 0.97876 1.06885 1.20885 0.94257 0.97127 0.97051 1.20667 0.99694 0.91165 1.10348 1.22203 0.97365 0.82757 0.94470 0.87522 1.23025 1.02361 0.93355 0.99018 1.21948 1.01474 0.97561 0.81367 1.47437 1.74549 1.08505 1.07740 1.15559 0.78122 0.80334 0.84046 1.90900 1.59513 1.81819 1.14939 1.45544 1.73444 1.07122 1.12717 1.21622 0.98912 0.86249 0.91538 1.19328 0.97685 0.89336 0.96100 1.21091 1.46925 0.93047 0.94761 0.92138 1.25003 0.95297 0.98799 0.95272 1.69970 1.49528 1.20259 1.13587 0.86448 0.78121 0.81645 0.81306 1.19562 1.20944 1.20958 1.22304 1.01663 0.79800 0.97131 0.93159 0.91228 0.91148 0.85970 0.86203 0.86599 0.86346 0.86120 0.89960 0.89483 0.91193 0.91162 0.77361 0.92730 0.92707 0.95963 0.95986 0.92927 0.90177 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 8.53 59.85 0.51 1.09 16 2 N -0.62 -5.14 3.04 -169.40 -0.52 -5.66 16 3 C 0.22 2.01 6.54 -83.79 -0.55 1.46 16 4 C -0.20 -1.84 9.26 -39.38 -0.36 -2.21 16 5 C -0.07 -0.62 10.04 -39.61 -0.40 -1.02 16 6 C -0.18 -1.47 10.04 -39.55 -0.40 -1.87 16 7 C -0.07 -0.59 10.04 -39.61 -0.40 -0.99 16 8 C -0.20 -1.65 9.16 -39.38 -0.36 -2.01 16 9 C 0.14 1.20 3.30 -65.65 -0.22 0.99 16 10 H 0.11 0.94 5.62 -51.93 -0.29 0.65 16 11 C -0.14 -1.03 6.48 -24.76 -0.16 -1.19 16 12 C 0.10 0.98 6.14 -3.07 -0.02 0.96 16 13 N -0.64 -8.73 3.33 -176.24 -0.59 -9.32 16 14 C 0.72 13.18 8.49 -86.92 -0.74 12.44 16 15 O -0.59 -13.29 16.60 5.29 0.09 -13.20 16 16 N -0.73 -13.46 5.52 -65.23 -0.36 -13.82 16 17 C 0.14 3.05 5.61 -4.05 -0.02 3.03 16 18 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 19 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 20 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 23 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.12 1.36 6.50 -2.53 -0.02 1.34 16 28 H 0.05 0.28 8.12 -51.93 -0.42 -0.15 16 29 H 0.07 0.40 6.46 -51.93 -0.34 0.06 16 30 H 0.07 0.45 6.63 -51.93 -0.34 0.11 16 31 H 0.12 1.09 5.91 -52.48 -0.31 0.77 16 32 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.12 0.82 6.31 -52.49 -0.33 0.49 16 36 H 0.08 0.55 6.77 -51.93 -0.35 0.20 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.39 6.27 7.46 -40.82 -0.30 5.97 16 41 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 47 H 0.06 0.75 6.74 -51.93 -0.35 0.40 16 LS Contribution 377.68 15.07 5.69 5.69 Total: -1.00 -33.25 377.68 -10.87 -44.12 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.23 Total: 2.18 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -3.68 Total: -1.05 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.73 Total: -54.17 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.25 -10.87 -44.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595580144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.486 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds