Wall clock time and date at job start Tue Mar 31 2020 11:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39677 * 120.00002 * 2 1 4 4 C 1.38912 * 120.07468 * 185.56053 * 3 2 1 5 5 C 1.38106 * 119.92286 * 179.76714 * 4 3 2 6 6 C 1.38284 * 120.07365 * 0.51163 * 5 4 3 7 7 C 1.38288 * 120.15299 * 359.74459 * 6 5 4 8 8 C 1.38106 * 120.07035 * 359.97438 * 7 6 5 9 9 C 1.46503 * 120.00238 * 180.02562 * 2 1 3 10 10 H 1.09003 * 110.88691 * 189.46802 * 9 2 1 11 11 C 1.55402 * 111.06735 * 313.24784 * 9 2 1 12 12 C 1.54323 * 102.82890 * 153.48588 * 11 9 2 13 13 N 1.47016 * 107.40227 * 337.97688 * 12 11 9 14 14 C 1.34774 * 125.65018 * 178.89443 * 13 12 11 15 15 O 1.21585 * 120.00379 * 179.97438 * 14 13 12 16 16 N 1.34774 * 120.00097 * 359.97438 * 14 13 12 17 17 C 1.46498 * 120.00594 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47553 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47366 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99860 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00352 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99743 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00192 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47120 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47300 * 119.99632 * 23 21 19 26 26 H 1.48497 * 109.47150 * 239.99878 * 23 21 19 27 27 C 1.47432 * 108.70346 * 358.86167 * 13 12 11 28 28 H 1.08996 * 109.46521 * 269.99838 * 1 2 3 29 29 H 1.08993 * 109.46965 * 29.99657 * 1 2 3 30 30 H 1.09001 * 109.47061 * 150.00001 * 1 2 3 31 31 H 1.08005 * 120.03820 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.95760 * 180.25256 * 5 4 3 33 33 H 1.08001 * 119.92381 * 179.72030 * 6 5 4 34 34 H 1.07991 * 119.96018 * 180.02562 * 7 6 5 35 35 H 1.07994 * 120.03265 * 179.97438 * 8 7 6 36 36 H 1.09002 * 110.69723 * 35.19344 * 11 9 2 37 37 H 1.09005 * 110.85356 * 271.84950 * 11 9 2 38 38 H 1.08997 * 109.88254 * 218.47840 * 12 11 9 39 39 H 1.09000 * 109.87803 * 97.47326 * 12 11 9 40 40 H 0.97005 * 120.00068 * 359.97438 * 16 14 13 41 41 H 1.09004 * 109.47096 * 299.99843 * 17 16 14 42 42 H 1.09004 * 109.46767 * 59.99262 * 17 16 14 43 43 H 1.09004 * 109.46935 * 300.00118 * 18 17 16 44 44 H 1.09006 * 109.47062 * 60.00074 * 18 17 16 45 45 H 0.96999 * 119.99634 * 179.97438 * 22 21 19 46 46 H 1.09002 * 110.36590 * 142.96558 * 27 13 12 47 47 H 1.08996 * 110.36720 * 265.17887 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2096 0.0000 4 6 3.5476 1.2143 -0.1165 5 6 4.2346 2.4124 -0.1210 6 6 3.5470 3.6059 0.0010 7 6 2.1694 3.6046 0.1224 8 6 1.4758 2.4104 0.1218 9 6 2.1976 -1.2687 -0.0006 10 1 3.2618 -1.1030 0.1670 11 6 1.6165 -2.2498 1.0553 12 6 1.9801 -3.6327 0.4748 13 7 2.1956 -3.4605 -0.9693 14 6 2.5513 -4.4331 -1.8318 15 8 2.7019 -4.1752 -3.0104 16 7 2.7400 -5.6916 -1.3880 17 6 3.1260 -6.7489 -2.3256 18 6 3.2747 -8.0711 -1.5703 19 6 3.6713 -9.1589 -2.5350 20 1 3.8035 -8.9301 -3.5822 21 6 3.8642 -10.4464 -2.0809 22 7 3.7026 -10.7251 -0.8058 23 14 4.3564 -11.7945 -3.2766 24 1 4.4730 -11.2257 -4.6433 25 1 5.6630 -12.3680 -2.8655 26 1 3.3238 -12.8618 -3.2716 27 6 1.9575 -2.0479 -1.3177 28 1 -0.3632 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5138 31 1 4.0856 0.2822 -0.2076 32 1 5.3105 2.4168 -0.2156 33 1 4.0870 4.5412 0.0017 34 1 1.6355 4.5386 0.2170 35 1 0.4000 2.4101 0.2171 36 1 0.5352 -2.1362 1.1327 37 1 2.0912 -2.1017 2.0253 38 1 1.1630 -4.3333 0.6467 39 1 2.8913 -4.0037 0.9440 40 1 2.6201 -5.8973 -0.4476 41 1 2.3584 -6.8526 -3.0925 42 1 4.0753 -6.4899 -2.7945 43 1 4.0426 -7.9672 -0.8037 44 1 2.3256 -8.3303 -1.1012 45 1 3.8380 -11.6309 -0.4864 46 1 2.6606 -1.7226 -2.0845 47 1 0.9323 -1.9095 -1.6609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595580144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:44 Heat of formation + Delta-G solvation = -10.315813 kcal Electronic energy + Delta-G solvation = -25728.630275 eV Core-core repulsion = 22103.555979 eV Total energy + Delta-G solvation = -3625.074296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51570 -40.47298 -38.89080 -36.63935 -36.36825 -34.82503 -32.58895 -31.85928 -31.18131 -30.49209 -29.61998 -27.25497 -26.42575 -24.52908 -23.40093 -22.89773 -22.49616 -21.08763 -20.87632 -19.19807 -18.94903 -18.47668 -17.38684 -16.94608 -16.55850 -16.43259 -16.40596 -15.86884 -15.44049 -15.29635 -15.23888 -14.84564 -14.55075 -14.48764 -14.34573 -14.15224 -14.01271 -13.62231 -13.41040 -13.22795 -12.95863 -12.90976 -12.72578 -12.55668 -12.49827 -12.26208 -12.21182 -11.84415 -11.69648 -11.52355 -11.50603 -11.24131 -10.75750 -10.61495 -10.21962 -9.77994 -9.55597 -8.24706 -8.21438 -6.34701 0.58302 0.73339 1.40615 1.40930 1.45519 1.55768 2.04899 2.18989 2.40845 2.99758 3.05676 3.10162 3.51943 3.56257 3.77956 4.01263 4.13212 4.18254 4.19647 4.33759 4.41184 4.44019 4.49120 4.56838 4.66110 4.66450 4.68243 4.71766 4.78662 4.83959 4.88846 4.90971 4.98559 5.08779 5.19599 5.21879 5.28307 5.40552 5.49797 5.57677 5.66401 5.78184 5.80120 5.97824 6.02145 6.16361 6.31167 6.58098 6.78169 6.93838 7.34482 7.49329 8.87443 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032140 B = 0.002017 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.988252 B =13879.118625 C =14134.317367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.621 5.621 3 C 0.204 3.796 4 C -0.215 4.215 5 C -0.084 4.084 6 C -0.189 4.189 7 C -0.080 4.080 8 C -0.203 4.203 9 C 0.148 3.852 10 H 0.105 0.895 11 C -0.124 4.124 12 C 0.093 3.907 13 N -0.635 5.635 14 C 0.714 3.286 15 O -0.640 6.640 16 N -0.729 5.729 17 C 0.160 3.840 18 C 0.025 3.975 19 C -0.546 4.546 20 H 0.058 0.942 21 C 0.007 3.993 22 N -0.925 5.925 23 Si 0.966 3.034 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C 0.114 3.886 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.406 0.594 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.009 0.991 44 H 0.009 0.991 45 H 0.266 0.734 46 H 0.056 0.944 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 28.249 9.085 30.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.331 5.331 3 C 0.103 3.897 4 C -0.238 4.238 5 C -0.102 4.102 6 C -0.209 4.209 7 C -0.098 4.098 8 C -0.225 4.225 9 C 0.042 3.958 10 H 0.123 0.877 11 C -0.162 4.162 12 C -0.030 4.030 13 N -0.374 5.374 14 C 0.416 3.584 15 O -0.522 6.522 16 N -0.383 5.383 17 C 0.036 3.964 18 C -0.012 4.012 19 C -0.584 4.584 20 H 0.076 0.924 21 C -0.192 4.192 22 N -0.565 5.565 23 Si 0.790 3.210 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.011 4.011 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.137 0.863 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.241 0.759 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.356 28.063 8.308 29.949 hybrid contribution 0.315 -1.203 -0.302 1.280 sum -6.041 26.860 8.005 28.671 Atomic orbital electron populations 1.21776 0.78268 1.03234 1.02279 1.46289 1.05433 1.01503 1.79857 1.18012 0.91364 0.86141 0.94215 1.20907 0.92896 0.99124 1.10828 1.21156 1.00344 0.92078 0.96645 1.21203 0.94882 0.98360 1.06488 1.21214 0.94387 0.97953 0.96278 1.20911 1.00567 0.90987 1.10037 1.22026 0.97692 0.83103 0.92992 0.87692 1.22995 1.03322 0.90876 0.99028 1.22257 1.02353 0.99553 0.78803 1.47386 1.72733 1.08258 1.09017 1.15654 0.78055 0.80733 0.83976 1.90861 1.61500 1.82602 1.17220 1.45209 1.73626 1.06716 1.12797 1.21112 0.98034 0.85923 0.91357 1.19121 0.96333 0.90321 0.95451 1.21480 1.47396 0.94316 0.95223 0.92353 1.25866 0.95078 1.01176 0.97056 1.70063 1.50094 1.21098 1.15228 0.85385 0.78004 0.78516 0.79067 1.19072 1.20184 1.20176 1.22436 1.01115 0.79020 0.98485 0.91676 0.90581 0.91195 0.86287 0.85124 0.84991 0.84214 0.84630 0.88601 0.87488 0.90233 0.90355 0.75858 0.93830 0.93840 0.97216 0.97216 0.92524 0.92579 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 8.53 127.77 1.09 2.01 16 2 N -0.62 -9.36 3.04 -689.85 -2.10 -11.46 16 3 C 0.20 3.54 6.54 38.21 0.25 3.79 16 4 C -0.22 -3.96 9.26 22.40 0.21 -3.75 16 5 C -0.08 -1.39 10.04 22.25 0.22 -1.16 16 6 C -0.19 -2.82 10.04 22.29 0.22 -2.59 16 7 C -0.08 -1.11 10.04 22.25 0.22 -0.89 16 8 C -0.20 -3.05 9.16 22.40 0.21 -2.85 16 9 C 0.15 2.40 3.30 46.47 0.15 2.56 16 10 H 0.11 1.78 5.62 -2.39 -0.01 1.76 16 11 C -0.12 -1.52 6.48 31.87 0.21 -1.31 16 12 C 0.09 1.64 6.14 86.73 0.53 2.17 16 13 N -0.64 -17.03 3.33 -829.77 -2.76 -19.79 16 14 C 0.71 26.56 8.49 179.06 1.52 28.08 16 15 O -0.64 -29.52 16.60 -3.98 -0.07 -29.58 16 16 N -0.73 -26.93 5.52 -478.55 -2.64 -29.57 16 17 C 0.16 7.15 5.61 86.38 0.48 7.64 16 18 C 0.03 1.29 5.09 29.85 0.15 1.44 16 19 C -0.55 -30.75 9.11 25.60 0.23 -30.51 16 20 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 21 C 0.01 0.40 5.46 84.65 0.46 0.86 16 22 N -0.93 -54.09 13.29 21.45 0.28 -53.81 16 23 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 27 C 0.11 2.65 6.50 86.85 0.56 3.22 16 28 H 0.06 0.52 8.12 -2.39 -0.02 0.50 16 29 H 0.08 0.71 6.46 -2.39 -0.02 0.70 16 30 H 0.07 0.75 6.63 -2.39 -0.02 0.74 16 31 H 0.12 2.15 5.91 -2.91 -0.02 2.13 16 32 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.13 1.44 8.06 -2.91 -0.02 1.42 16 34 H 0.14 1.27 8.06 -2.92 -0.02 1.24 16 35 H 0.14 1.54 6.31 -2.91 -0.02 1.52 16 36 H 0.10 0.97 6.77 -2.39 -0.02 0.96 16 37 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 40 H 0.41 12.81 7.46 -92.70 -0.69 12.12 16 41 H 0.04 2.03 8.14 -2.39 -0.02 2.02 16 42 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 44 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 45 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.06 1.57 8.04 -2.39 -0.02 1.55 16 47 H 0.07 1.54 6.74 -2.39 -0.02 1.52 16 Total: -1.00 -72.00 377.68 1.76 -70.25 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.28 Total: 19.43 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 6.73 Total: 8.69 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -7.21 Total: -114.63 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.07 Total: -29.58 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -72.00 1.76 -70.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595580144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.931 kcal (2) G-P(sol) polarization free energy of solvation -72.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds