Wall clock time and date at job start Tue Mar 31 2020 11:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.39672 * 120.00104 * 2 1 4 4 C 1.38916 * 120.07404 * 5.58640 * 3 2 1 5 5 C 1.38104 * 119.92419 * 179.76653 * 4 3 2 6 6 C 1.38287 * 120.07291 * 0.50529 * 5 4 3 7 7 C 1.38277 * 120.15149 * 359.74701 * 6 5 4 8 8 C 1.38103 * 120.07809 * 359.97438 * 7 6 5 9 9 C 1.46500 * 119.99922 * 180.02562 * 2 1 3 10 10 H 1.09001 * 110.63966 * 182.44087 * 9 2 1 11 11 C 1.55150 * 110.72303 * 59.10778 * 9 2 1 12 12 C 1.55125 * 101.48895 * 205.96777 * 11 9 2 13 13 N 1.47429 * 104.72321 * 37.29437 * 12 11 9 14 14 C 1.34776 * 125.65320 * 155.81361 * 13 12 11 15 15 O 1.21580 * 120.00291 * 179.69285 * 14 13 12 16 16 N 1.34774 * 119.99476 * 359.69879 * 14 13 12 17 17 C 1.46501 * 119.99853 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47392 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47184 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99988 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00062 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99979 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99953 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47270 * 270.00094 * 23 21 19 25 25 H 1.48498 * 109.47315 * 30.00346 * 23 21 19 26 26 H 1.48503 * 109.46823 * 150.00123 * 23 21 19 27 27 C 1.47030 * 108.69936 * 335.55410 * 13 12 11 28 28 H 1.08999 * 109.47022 * 269.99610 * 1 2 3 29 29 H 1.09004 * 109.47517 * 29.99904 * 1 2 3 30 30 H 1.09003 * 109.47229 * 149.99439 * 1 2 3 31 31 H 1.08004 * 120.03625 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.96471 * 180.24785 * 5 4 3 33 33 H 1.08000 * 119.91980 * 179.76289 * 6 5 4 34 34 H 1.08003 * 119.96287 * 180.02562 * 7 6 5 35 35 H 1.07995 * 120.04233 * 180.02562 * 8 7 6 36 36 H 1.08997 * 111.00313 * 324.20824 * 11 9 2 37 37 H 1.09007 * 111.00853 * 88.01952 * 11 9 2 38 38 H 1.09000 * 110.50046 * 278.45291 * 12 11 9 39 39 H 1.09004 * 110.34671 * 156.05421 * 12 11 9 40 40 H 0.97002 * 120.00409 * 359.97438 * 16 14 13 41 41 H 1.09006 * 109.47000 * 59.99912 * 17 16 14 42 42 H 1.08996 * 109.47058 * 300.00270 * 17 16 14 43 43 H 1.08997 * 109.47091 * 59.99861 * 18 17 16 44 44 H 1.08998 * 109.46769 * 299.99836 * 18 17 16 45 45 H 0.97004 * 119.99801 * 359.97438 * 22 21 19 46 46 H 1.09002 * 109.87977 * 120.69874 * 27 13 12 47 47 H 1.08992 * 109.87925 * 241.71271 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1633 1.2096 0.0000 4 6 1.4753 2.4107 0.1170 5 6 2.1693 3.6046 0.1215 6 6 3.5468 3.6059 -0.0008 7 6 4.2344 2.4124 -0.1227 8 6 3.5471 1.2145 -0.1222 9 6 2.1974 -1.2687 -0.0006 10 1 3.2721 -1.0920 0.0430 11 6 1.8267 -2.1161 -1.2462 12 6 2.1123 -3.5537 -0.7381 13 7 1.6867 -3.5437 0.6734 14 6 1.3133 -4.6230 1.3890 15 8 0.9854 -4.4971 2.5529 16 7 1.3035 -5.8420 0.8142 17 6 0.8981 -7.0154 1.5921 18 6 0.9747 -8.2633 0.7103 19 6 0.5583 -9.4704 1.5107 20 1 0.2676 -9.3586 2.5448 21 6 0.5473 -10.7174 0.9225 22 7 0.9007 -10.8535 -0.3369 23 14 0.0319 -12.2136 1.9149 24 1 1.2244 -12.8073 2.5711 25 1 -0.9514 -11.8061 2.9504 26 1 -0.5873 -13.2170 1.0121 27 6 1.7431 -2.1620 1.1730 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 0.3991 2.4106 0.2078 32 1 1.6354 4.5386 0.2165 33 1 4.0867 4.5413 -0.0008 34 1 5.3102 2.4169 -0.2176 35 1 4.0847 0.2827 -0.2170 36 1 0.7752 -1.9913 -1.5048 37 1 2.4672 -1.8677 -2.0926 38 1 3.1760 -3.7804 -0.8120 39 1 1.5287 -4.2791 -1.3051 40 1 1.5648 -5.9425 -0.1145 41 1 -0.1248 -6.8821 1.9444 42 1 1.5643 -7.1325 2.4468 43 1 1.9973 -8.3968 0.3576 44 1 0.3081 -8.1459 -0.1441 45 1 1.1688 -10.0765 -0.8521 46 1 0.7560 -1.8510 1.5150 47 1 2.4581 -2.0932 1.9927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595580145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:49 Heat of formation + Delta-G solvation = 8.019246 kcal Electronic energy + Delta-G solvation = -25762.423544 eV Core-core repulsion = 22138.144315 eV Total energy + Delta-G solvation = -3624.279228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.56694 -39.60675 -37.96699 -35.63304 -35.00380 -33.09918 -31.64490 -31.09944 -29.93602 -29.46607 -28.60454 -26.34174 -24.50594 -23.37361 -22.76218 -21.94064 -21.36327 -20.21121 -19.77154 -18.35043 -18.11533 -16.68593 -16.49264 -15.85810 -15.73969 -15.52891 -14.89894 -14.78335 -14.40106 -14.29846 -13.91758 -13.86407 -13.76590 -13.68548 -13.16797 -12.95198 -12.85481 -12.53568 -12.37209 -12.23279 -12.06203 -11.96276 -11.64905 -11.62830 -11.28023 -10.97939 -10.90369 -10.44645 -10.17899 -10.13337 -10.02550 -9.90679 -9.19759 -8.84456 -8.71251 -8.43956 -8.29521 -7.61693 -6.45139 -4.14866 1.16674 1.32808 2.46652 2.95552 3.42225 3.45294 3.45773 3.61333 3.61603 4.10120 4.16465 4.40587 4.41335 4.53387 4.58612 4.74089 4.80806 4.85768 4.89513 5.00040 5.15378 5.19680 5.29424 5.32206 5.33172 5.37978 5.40408 5.49867 5.59970 5.63479 5.72522 5.74075 5.97740 6.03309 6.22825 6.24680 6.25972 6.37366 6.58108 6.60876 6.84421 6.89546 7.11050 7.18454 7.31804 7.34368 8.06581 8.23813 8.37854 8.78663 8.86707 9.56926 10.95985 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.040478 B = 0.001966 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.559722 B =14239.583691 C =14381.334757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.621 5.621 3 C 0.219 3.781 4 C -0.196 4.196 5 C -0.073 4.073 6 C -0.182 4.182 7 C -0.072 4.072 8 C -0.198 4.198 9 C 0.140 3.860 10 H 0.108 0.892 11 C -0.144 4.144 12 C 0.100 3.900 13 N -0.641 5.641 14 C 0.718 3.282 15 O -0.592 6.592 16 N -0.737 5.737 17 C 0.147 3.853 18 C 0.000 4.000 19 C -0.601 4.601 20 H 0.054 0.946 21 C 0.017 3.983 22 N -0.911 5.911 23 Si 1.074 2.926 24 H -0.287 1.287 25 H -0.287 1.287 26 H -0.284 1.284 27 C 0.118 3.882 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.392 0.608 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.013 0.987 44 H 0.013 0.987 45 H 0.268 0.732 46 H 0.070 0.930 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 28.673 -4.857 29.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.331 5.331 3 C 0.117 3.883 4 C -0.219 4.219 5 C -0.092 4.092 6 C -0.202 4.202 7 C -0.091 4.091 8 C -0.221 4.221 9 C 0.034 3.966 10 H 0.126 0.874 11 C -0.183 4.183 12 C -0.024 4.024 13 N -0.382 5.382 14 C 0.420 3.580 15 O -0.470 6.470 16 N -0.391 5.391 17 C 0.024 3.976 18 C -0.037 4.037 19 C -0.640 4.640 20 H 0.072 0.928 21 C -0.187 4.187 22 N -0.547 5.547 23 Si 0.902 3.098 24 H -0.213 1.213 25 H -0.213 1.213 26 H -0.209 1.209 27 C -0.007 4.007 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.225 0.775 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.031 0.969 44 H 0.031 0.969 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.643 26.849 -3.995 27.388 hybrid contribution 0.348 1.606 -0.397 1.690 sum 3.991 28.455 -4.392 29.067 Atomic orbital electron populations 1.21653 0.79412 1.02775 1.01561 1.46328 1.04832 1.02106 1.79789 1.17837 0.91249 0.85515 0.93653 1.20696 0.99783 0.91186 1.10198 1.20898 0.94268 0.97160 0.96883 1.20912 0.94411 0.97884 1.06947 1.20900 0.99452 0.91988 0.96775 1.20737 0.92350 0.98728 1.10243 1.22048 0.97349 0.82897 0.94271 0.87397 1.23230 1.03303 0.93851 0.97888 1.22294 1.00270 0.97501 0.82332 1.47471 1.72178 1.06379 1.12171 1.15532 0.78476 0.79813 0.84208 1.90904 1.55859 1.84826 1.15425 1.45554 1.71922 1.06066 1.15580 1.21455 0.99051 0.82537 0.94515 1.19454 0.96728 0.91969 0.95572 1.21909 1.49816 0.92995 0.99261 0.92776 1.25892 0.94586 1.01155 0.97083 1.70778 1.41715 1.34028 1.08147 0.83465 0.76559 0.74952 0.74818 1.21346 1.21330 1.20949 1.21991 1.02286 0.80275 0.96163 0.93056 0.91165 0.91113 0.86079 0.86312 0.86595 0.86243 0.86014 0.89906 0.89381 0.91105 0.90398 0.77485 0.92564 0.92522 0.96874 0.96898 0.92181 0.91163 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 8.77 59.84 0.52 1.18 16 2 N -0.62 -5.22 3.02 -169.91 -0.51 -5.73 16 3 C 0.22 1.96 6.54 -83.78 -0.55 1.42 16 4 C -0.20 -1.65 9.16 -39.38 -0.36 -2.01 16 5 C -0.07 -0.57 10.04 -39.61 -0.40 -0.97 16 6 C -0.18 -1.40 10.04 -39.55 -0.40 -1.79 16 7 C -0.07 -0.57 10.04 -39.62 -0.40 -0.97 16 8 C -0.20 -1.69 9.29 -39.38 -0.37 -2.06 16 9 C 0.14 1.18 3.28 -66.10 -0.22 0.96 16 10 H 0.11 0.82 5.46 -51.93 -0.28 0.54 16 11 C -0.14 -1.08 6.63 -24.47 -0.16 -1.24 16 12 C 0.10 0.95 6.59 -2.41 -0.02 0.93 16 13 N -0.64 -8.65 3.33 -176.10 -0.59 -9.24 16 14 C 0.72 13.15 8.49 -86.92 -0.74 12.41 16 15 O -0.59 -13.27 16.67 5.30 0.09 -13.19 16 16 N -0.74 -13.44 5.52 -65.23 -0.36 -13.80 16 17 C 0.15 3.24 5.61 -4.04 -0.02 3.22 16 18 C 0.00 0.01 4.40 -27.88 -0.12 -0.12 16 19 C -0.60 -16.99 9.11 -34.44 -0.31 -17.31 16 20 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 21 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 22 N -0.91 -27.31 13.65 55.43 0.76 -26.55 16 23 Si 1.07 25.17 29.90 -169.99 -5.08 20.09 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.12 1.37 6.50 -3.06 -0.02 1.35 16 28 H 0.05 0.40 7.87 -51.93 -0.41 -0.01 16 29 H 0.07 0.43 6.45 -51.93 -0.33 0.09 16 30 H 0.07 0.51 6.34 -51.93 -0.33 0.18 16 31 H 0.12 0.86 6.30 -52.48 -0.33 0.53 16 32 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 33 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 34 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.12 0.90 5.82 -52.49 -0.31 0.60 16 36 H 0.08 0.64 6.34 -51.93 -0.33 0.31 16 37 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.72 7.29 -51.93 -0.38 0.34 16 40 H 0.39 6.14 6.95 -40.82 -0.28 5.86 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.01 0.33 8.01 -51.93 -0.42 -0.08 16 44 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 45 H 0.27 7.91 7.22 -40.82 -0.29 7.62 16 46 H 0.07 0.89 6.75 -51.93 -0.35 0.53 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -34.10 374.77 -10.74 -44.85 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.04 Total: 2.54 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -3.65 Total: -4.61 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.70 Total: -55.32 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.10 -10.74 -44.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595580145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.865 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds