Wall clock time and date at job start Tue Mar 31 2020 11:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.39672 * 120.00104 * 2 1 4 4 C 1.38916 * 120.07404 * 5.58640 * 3 2 1 5 5 C 1.38104 * 119.92419 * 179.76653 * 4 3 2 6 6 C 1.38287 * 120.07291 * 0.50529 * 5 4 3 7 7 C 1.38277 * 120.15149 * 359.74701 * 6 5 4 8 8 C 1.38103 * 120.07809 * 359.97438 * 7 6 5 9 9 C 1.46500 * 119.99922 * 180.02562 * 2 1 3 10 10 H 1.09001 * 110.63966 * 182.44087 * 9 2 1 11 11 C 1.55150 * 110.72303 * 59.10778 * 9 2 1 12 12 C 1.55125 * 101.48895 * 205.96777 * 11 9 2 13 13 N 1.47429 * 104.72321 * 37.29437 * 12 11 9 14 14 C 1.34776 * 125.65320 * 155.81361 * 13 12 11 15 15 O 1.21580 * 120.00291 * 179.69285 * 14 13 12 16 16 N 1.34774 * 119.99476 * 359.69879 * 14 13 12 17 17 C 1.46501 * 119.99853 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47392 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47184 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99988 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00062 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99979 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99953 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47270 * 270.00094 * 23 21 19 25 25 H 1.48498 * 109.47315 * 30.00346 * 23 21 19 26 26 H 1.48503 * 109.46823 * 150.00123 * 23 21 19 27 27 C 1.47030 * 108.69936 * 335.55410 * 13 12 11 28 28 H 1.08999 * 109.47022 * 269.99610 * 1 2 3 29 29 H 1.09004 * 109.47517 * 29.99904 * 1 2 3 30 30 H 1.09003 * 109.47229 * 149.99439 * 1 2 3 31 31 H 1.08004 * 120.03625 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.96471 * 180.24785 * 5 4 3 33 33 H 1.08000 * 119.91980 * 179.76289 * 6 5 4 34 34 H 1.08003 * 119.96287 * 180.02562 * 7 6 5 35 35 H 1.07995 * 120.04233 * 180.02562 * 8 7 6 36 36 H 1.08997 * 111.00313 * 324.20824 * 11 9 2 37 37 H 1.09007 * 111.00853 * 88.01952 * 11 9 2 38 38 H 1.09000 * 110.50046 * 278.45291 * 12 11 9 39 39 H 1.09004 * 110.34671 * 156.05421 * 12 11 9 40 40 H 0.97002 * 120.00409 * 359.97438 * 16 14 13 41 41 H 1.09006 * 109.47000 * 59.99912 * 17 16 14 42 42 H 1.08996 * 109.47058 * 300.00270 * 17 16 14 43 43 H 1.08997 * 109.47091 * 59.99861 * 18 17 16 44 44 H 1.08998 * 109.46769 * 299.99836 * 18 17 16 45 45 H 0.97004 * 119.99801 * 359.97438 * 22 21 19 46 46 H 1.09002 * 109.87977 * 120.69874 * 27 13 12 47 47 H 1.08992 * 109.87925 * 241.71271 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1633 1.2096 0.0000 4 6 1.4753 2.4107 0.1170 5 6 2.1693 3.6046 0.1215 6 6 3.5468 3.6059 -0.0008 7 6 4.2344 2.4124 -0.1227 8 6 3.5471 1.2145 -0.1222 9 6 2.1974 -1.2687 -0.0006 10 1 3.2721 -1.0920 0.0430 11 6 1.8267 -2.1161 -1.2462 12 6 2.1123 -3.5537 -0.7381 13 7 1.6867 -3.5437 0.6734 14 6 1.3133 -4.6230 1.3890 15 8 0.9854 -4.4971 2.5529 16 7 1.3035 -5.8420 0.8142 17 6 0.8981 -7.0154 1.5921 18 6 0.9747 -8.2633 0.7103 19 6 0.5583 -9.4704 1.5107 20 1 0.2676 -9.3586 2.5448 21 6 0.5473 -10.7174 0.9225 22 7 0.9007 -10.8535 -0.3369 23 14 0.0319 -12.2136 1.9149 24 1 1.2244 -12.8073 2.5711 25 1 -0.9514 -11.8061 2.9504 26 1 -0.5873 -13.2170 1.0121 27 6 1.7431 -2.1620 1.1730 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 0.3991 2.4106 0.2078 32 1 1.6354 4.5386 0.2165 33 1 4.0867 4.5413 -0.0008 34 1 5.3102 2.4169 -0.2176 35 1 4.0847 0.2827 -0.2170 36 1 0.7752 -1.9913 -1.5048 37 1 2.4672 -1.8677 -2.0926 38 1 3.1760 -3.7804 -0.8120 39 1 1.5287 -4.2791 -1.3051 40 1 1.5648 -5.9425 -0.1145 41 1 -0.1248 -6.8821 1.9444 42 1 1.5643 -7.1325 2.4468 43 1 1.9973 -8.3968 0.3576 44 1 0.3081 -8.1459 -0.1441 45 1 1.1688 -10.0765 -0.8521 46 1 0.7560 -1.8510 1.5150 47 1 2.4581 -2.0932 1.9927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595580145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:48 Heat of formation + Delta-G solvation = -12.392371 kcal Electronic energy + Delta-G solvation = -25763.308658 eV Core-core repulsion = 22138.144315 eV Total energy + Delta-G solvation = -3625.164343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.58957 -40.51619 -38.94104 -36.86910 -36.40223 -35.05125 -32.59634 -31.83250 -31.00711 -30.61304 -29.55786 -27.19207 -26.21580 -24.59896 -23.41327 -23.26381 -22.52404 -21.26338 -20.79064 -19.44497 -18.98972 -18.68479 -17.45937 -17.12213 -16.62612 -16.43112 -15.98895 -15.80980 -15.62811 -15.35572 -15.28930 -15.01215 -14.67142 -14.53837 -14.28035 -14.15788 -14.00501 -13.64280 -13.57635 -13.34003 -12.94514 -12.89805 -12.79732 -12.69060 -12.31299 -12.22456 -12.08432 -11.90953 -11.88963 -11.52628 -11.52215 -10.81760 -10.74676 -10.59105 -10.32733 -9.78138 -9.61916 -8.72803 -8.24313 -6.43636 0.58230 0.72604 1.38731 1.54453 1.62310 1.81077 1.98863 2.13157 2.54833 2.95576 3.02086 3.12676 3.42140 3.52105 3.76365 3.99968 4.08347 4.17634 4.19980 4.25310 4.26739 4.32378 4.41049 4.52871 4.55913 4.64955 4.66039 4.67015 4.68453 4.74982 4.83685 4.87188 4.91095 5.04677 5.09802 5.15546 5.22461 5.31541 5.38004 5.39700 5.66029 5.79869 5.88895 5.93042 6.01569 6.13198 6.27423 6.52543 6.56770 6.86365 7.35436 7.42418 8.69647 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.040478 B = 0.001966 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.559722 B =14239.583691 C =14381.334757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.622 5.622 3 C 0.203 3.797 4 C -0.208 4.208 5 C -0.081 4.081 6 C -0.189 4.189 7 C -0.081 4.081 8 C -0.210 4.210 9 C 0.151 3.849 10 H 0.121 0.879 11 C -0.130 4.130 12 C 0.092 3.908 13 N -0.634 5.634 14 C 0.714 3.286 15 O -0.639 6.639 16 N -0.730 5.730 17 C 0.167 3.833 18 C 0.009 3.991 19 C -0.623 4.623 20 H 0.049 0.951 21 C -0.031 4.031 22 N -0.932 5.932 23 Si 1.120 2.880 24 H -0.272 1.272 25 H -0.273 1.273 26 H -0.280 1.280 27 C 0.115 3.885 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.406 0.594 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.007 0.993 44 H 0.007 0.993 45 H 0.259 0.741 46 H 0.057 0.943 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.871 29.779 -5.764 30.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.333 5.333 3 C 0.102 3.898 4 C -0.230 4.230 5 C -0.100 4.100 6 C -0.209 4.209 7 C -0.100 4.100 8 C -0.232 4.232 9 C 0.045 3.955 10 H 0.139 0.861 11 C -0.169 4.169 12 C -0.030 4.030 13 N -0.373 5.373 14 C 0.416 3.584 15 O -0.521 6.521 16 N -0.385 5.385 17 C 0.043 3.957 18 C -0.028 4.028 19 C -0.661 4.661 20 H 0.068 0.932 21 C -0.230 4.230 22 N -0.568 5.568 23 Si 0.941 3.059 24 H -0.197 1.197 25 H -0.198 1.198 26 H -0.205 1.205 27 C -0.009 4.009 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.101 0.899 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.242 0.758 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.025 0.975 44 H 0.025 0.975 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.274 28.024 -4.963 28.780 hybrid contribution 0.193 1.400 -0.128 1.419 sum 4.467 29.424 -5.092 30.194 Atomic orbital electron populations 1.21689 0.79045 1.03480 1.01240 1.46334 1.05085 1.01907 1.79951 1.18025 0.91681 0.85749 0.94332 1.20904 1.00385 0.91382 1.10337 1.21188 0.94616 0.97740 0.96455 1.21214 0.94649 0.98654 1.06410 1.21188 1.00487 0.91887 0.96388 1.20941 0.92356 0.99472 1.10425 1.21961 0.97922 0.82534 0.93060 0.86141 1.23198 1.03934 0.91801 0.97972 1.22630 1.01358 0.99231 0.79770 1.47430 1.70443 1.05746 1.13668 1.15638 0.78391 0.80514 0.83870 1.90865 1.57941 1.85649 1.17680 1.45193 1.72103 1.05318 1.15933 1.20936 0.98027 0.82924 0.93815 1.19286 0.95873 0.92350 0.95310 1.22316 1.49811 0.94498 0.99500 0.93241 1.27355 0.93895 1.04396 0.97325 1.70895 1.43221 1.33723 1.08995 0.82886 0.77136 0.71900 0.73976 1.19741 1.19782 1.20515 1.22130 1.01440 0.79837 0.97540 0.93936 0.89841 0.91008 0.85354 0.84582 0.84987 0.84562 0.85145 0.89910 0.86818 0.89307 0.89904 0.75845 0.93904 0.93845 0.97476 0.97495 0.93131 0.92438 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.21 8.77 127.77 1.12 2.33 16 2 N -0.62 -9.64 3.02 -691.46 -2.09 -11.73 16 3 C 0.20 3.36 6.54 38.22 0.25 3.61 16 4 C -0.21 -3.22 9.16 22.40 0.21 -3.02 16 5 C -0.08 -1.13 10.04 22.25 0.22 -0.91 16 6 C -0.19 -2.57 10.04 22.29 0.22 -2.35 16 7 C -0.08 -1.12 10.04 22.25 0.22 -0.90 16 8 C -0.21 -3.22 9.29 22.40 0.21 -3.01 16 9 C 0.15 2.29 3.28 46.18 0.15 2.44 16 10 H 0.12 1.56 5.46 -2.39 -0.01 1.55 16 11 C -0.13 -1.61 6.63 32.06 0.21 -1.40 16 12 C 0.09 1.56 6.59 86.93 0.57 2.13 16 13 N -0.63 -16.70 3.33 -829.31 -2.76 -19.45 16 14 C 0.71 26.32 8.49 179.06 1.52 27.84 16 15 O -0.64 -29.43 16.67 -3.97 -0.07 -29.49 16 16 N -0.73 -26.64 5.52 -478.54 -2.64 -29.28 16 17 C 0.17 7.50 5.61 86.38 0.48 7.98 16 18 C 0.01 0.47 4.40 29.85 0.13 0.60 16 19 C -0.62 -35.46 9.11 25.60 0.23 -35.23 16 20 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 21 C -0.03 -1.79 5.46 84.65 0.46 -1.33 16 22 N -0.93 -55.94 13.65 21.45 0.29 -55.65 16 23 Si 1.12 49.97 29.90 68.60 2.05 52.02 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 C 0.12 2.64 6.50 86.73 0.56 3.21 16 28 H 0.04 0.65 7.87 -2.39 -0.02 0.63 16 29 H 0.08 0.91 6.45 -2.38 -0.02 0.89 16 30 H 0.07 0.96 6.34 -2.39 -0.02 0.95 16 31 H 0.13 1.68 6.30 -2.91 -0.02 1.66 16 32 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.13 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 35 H 0.13 1.66 5.82 -2.91 -0.02 1.64 16 36 H 0.08 1.08 6.34 -2.39 -0.02 1.06 16 37 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.36 7.29 -2.38 -0.02 1.34 16 40 H 0.41 12.44 6.95 -92.71 -0.64 11.79 16 41 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.01 0.36 8.01 -2.39 -0.02 0.34 16 44 H 0.01 0.35 8.01 -2.39 -0.02 0.33 16 45 H 0.26 15.48 7.22 -92.71 -0.67 14.81 16 46 H 0.06 1.47 6.75 -2.39 -0.02 1.46 16 47 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -73.86 374.77 2.01 -71.85 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.43 Total: 19.72 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 6.79 Total: 2.01 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -7.19 Total: -116.10 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.07 Total: -29.49 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.05 Total: 52.02 kcal Total: -73.86 2.01 -71.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595580145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.454 kcal (2) G-P(sol) polarization free energy of solvation -73.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds