Wall clock time and date at job start Tue Mar 31 2020 11:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46893 * 111.00366 * 2 1 4 4 C 1.39926 * 110.99525 * 123.95097 * 2 1 3 5 5 C 1.38711 * 120.10244 * 300.29905 * 4 2 1 6 6 C 1.38231 * 119.99447 * 180.29890 * 5 4 2 7 7 C 1.38270 * 120.19221 * 359.69888 * 6 5 4 8 8 C 1.38249 * 120.19690 * 359.97438 * 7 6 5 9 9 C 1.38650 * 120.00181 * 0.04143 * 8 7 6 10 10 N 1.40216 * 120.09592 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99562 * 27.47448 * 10 9 8 12 12 O 1.21590 * 120.00165 * 353.09472 * 11 10 9 13 13 N 1.34777 * 119.99401 * 173.37548 * 11 10 9 14 14 C 1.46920 * 120.63320 * 7.05784 * 13 11 10 15 15 C 1.53191 * 108.77437 * 126.37458 * 14 13 11 16 16 C 1.53032 * 109.31614 * 54.63587 * 15 14 13 17 17 C 1.53042 * 109.54000 * 298.63776 * 16 15 14 18 18 H 1.09011 * 109.49435 * 301.41359 * 17 16 15 19 19 C 1.50695 * 109.50227 * 181.34697 * 17 16 15 20 20 H 1.07997 * 119.99930 * 0.02562 * 19 17 16 21 21 C 1.37878 * 120.00181 * 179.97438 * 19 17 16 22 22 N 1.31522 * 119.99945 * 359.97438 * 21 19 17 23 23 Si 1.86795 * 120.00068 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47356 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47223 * 120.00061 * 23 21 19 26 26 H 1.48501 * 109.47151 * 239.99762 * 23 21 19 27 27 C 1.46932 * 120.62846 * 186.78510 * 13 11 10 28 28 H 1.09003 * 109.47376 * 296.04820 * 1 2 3 29 29 H 1.09001 * 109.47028 * 56.04990 * 1 2 3 30 30 H 1.08997 * 109.47397 * 176.04596 * 1 2 3 31 31 H 1.08997 * 109.47418 * 183.95118 * 3 2 1 32 32 H 1.08999 * 109.47044 * 303.95540 * 3 2 1 33 33 H 1.09004 * 109.47481 * 63.95133 * 3 2 1 34 34 H 1.08006 * 119.99833 * 359.97438 * 5 4 2 35 35 H 1.07996 * 119.90115 * 179.71892 * 6 5 4 36 36 H 1.07998 * 119.90676 * 179.97438 * 7 6 5 37 37 H 1.08001 * 120.00016 * 180.02562 * 8 7 6 38 38 H 0.96991 * 119.99858 * 207.47986 * 10 9 8 39 39 H 1.08998 * 109.59164 * 246.16052 * 14 13 11 40 40 H 1.08997 * 109.58900 * 6.58503 * 14 13 11 41 41 H 1.09007 * 109.49957 * 174.58806 * 15 14 13 42 42 H 1.09001 * 109.49562 * 294.68051 * 15 14 13 43 43 H 1.09001 * 109.46060 * 58.65400 * 16 15 14 44 44 H 1.09004 * 109.46345 * 178.61514 * 16 15 14 45 45 H 0.97000 * 119.99887 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.58494 * 353.41471 * 27 13 11 47 47 H 1.09001 * 109.58978 * 113.83806 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9703 -0.7296 1.0837 5 6 1.6543 -0.3540 2.3810 6 6 2.1558 -1.0726 3.4500 7 6 2.9677 -2.1702 3.2305 8 6 3.2822 -2.5555 1.9406 9 6 2.7839 -1.8404 0.8624 10 7 3.1020 -2.2292 -0.4467 11 6 3.3873 -3.5186 -0.7161 12 8 3.4924 -4.3205 0.1918 13 7 3.5618 -3.9177 -1.9915 14 6 3.5975 -2.9368 -3.0847 15 6 4.8831 -3.1443 -3.8915 16 6 4.9622 -4.6016 -4.3519 17 6 5.0045 -5.5227 -3.1304 18 1 5.8662 -5.2688 -2.5130 19 6 5.1156 -6.9554 -3.5844 20 1 5.1529 -7.1864 -4.6387 21 6 5.1708 -7.9711 -2.6537 22 7 5.1270 -7.6897 -1.3697 23 14 5.3093 -9.7470 -3.2163 24 1 5.3406 -9.7951 -4.7003 25 1 6.5576 -10.3419 -2.6749 26 1 4.1393 -10.5158 -2.7212 27 6 3.7259 -5.3417 -2.3144 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3431 -0.0708 32 1 1.5898 1.9162 -0.8524 33 1 1.7044 1.8724 0.9233 34 1 1.0207 0.5030 2.5560 35 1 1.9126 -0.7762 4.4596 36 1 3.3574 -2.7281 4.0691 37 1 3.9163 -3.4136 1.7728 38 1 3.1168 -1.5702 -1.1582 39 1 2.7326 -3.0798 -3.7324 40 1 3.5843 -1.9283 -2.6714 41 1 4.8766 -2.4878 -4.7616 42 1 5.7459 -2.9128 -3.2669 43 1 4.0866 -4.8396 -4.9559 44 1 5.8639 -4.7461 -4.9471 45 1 5.1662 -8.4043 -0.7149 46 1 3.7972 -5.9195 -1.3929 47 1 2.8716 -5.6849 -2.8980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596671335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:39 Heat of formation + Delta-G solvation = 19.518078 kcal Electronic energy + Delta-G solvation = -27402.771242 eV Core-core repulsion = 23778.990641 eV Total energy + Delta-G solvation = -3623.780602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.59641 -39.22822 -37.09725 -36.27250 -34.38102 -33.26894 -31.82092 -29.92215 -29.84415 -28.95753 -27.76891 -25.08757 -24.72800 -24.47779 -22.40348 -21.81726 -21.00992 -20.01401 -18.78324 -17.95971 -17.05819 -16.52665 -16.16013 -15.44338 -15.22593 -14.95002 -14.73577 -14.49943 -14.10495 -13.99598 -13.73538 -13.53835 -13.21093 -13.02155 -12.71368 -12.56617 -12.38819 -12.35247 -12.09675 -11.93279 -11.87075 -11.74114 -11.25920 -10.99133 -10.88873 -10.49518 -10.38600 -10.26557 -10.13071 -9.86040 -9.28728 -9.08777 -8.94525 -8.70350 -8.63712 -8.41933 -7.96116 -7.53283 -5.97266 -4.06364 1.37118 1.54462 3.11652 3.32103 3.40166 3.42998 3.60744 3.72444 4.02495 4.32152 4.45969 4.90523 4.98653 5.11677 5.15583 5.24815 5.25843 5.29728 5.32655 5.40866 5.49036 5.61354 5.62574 5.67404 5.71557 5.75002 5.98289 6.05500 6.16879 6.31729 6.31915 6.40973 6.59834 6.65406 6.66855 6.68752 6.80402 6.81958 6.99100 6.99648 7.08675 7.33813 7.43714 7.49305 7.75148 7.92658 8.06652 8.41583 8.49021 8.97378 9.13226 9.59290 11.07681 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018473 B = 0.003562 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.374362 B = 7859.511022 C = 8933.422026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.507 5.507 3 C 0.027 3.973 4 C 0.036 3.964 5 C -0.129 4.129 6 C -0.144 4.144 7 C -0.099 4.099 8 C -0.132 4.132 9 C 0.206 3.794 10 N -0.680 5.680 11 C 0.697 3.303 12 O -0.566 6.566 13 N -0.616 5.616 14 C 0.114 3.886 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.039 3.961 18 H 0.029 0.971 19 C -0.521 4.521 20 H 0.059 0.941 21 C 0.063 3.937 22 N -0.878 5.878 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.128 3.872 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.163 0.837 38 H 0.408 0.592 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.263 0.737 46 H 0.125 0.875 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.326 18.568 3.555 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.228 5.228 3 C -0.120 4.120 4 C -0.061 4.061 5 C -0.150 4.150 6 C -0.163 4.163 7 C -0.118 4.118 8 C -0.153 4.153 9 C 0.108 3.892 10 N -0.328 5.328 11 C 0.400 3.600 12 O -0.442 6.442 13 N -0.352 5.352 14 C -0.010 4.010 15 C -0.172 4.172 16 C -0.147 4.147 17 C 0.019 3.981 18 H 0.047 0.953 19 C -0.559 4.559 20 H 0.077 0.923 21 C -0.140 4.140 22 N -0.516 5.516 23 Si 0.719 3.281 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.007 3.993 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.180 0.820 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.142 0.858 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.095 17.590 3.805 19.345 hybrid contribution -0.310 -0.112 0.068 0.337 sum -7.406 17.478 3.873 19.373 Atomic orbital electron populations 1.22415 0.85945 1.02744 1.00482 1.59504 1.08543 1.13718 1.41051 1.22466 1.00985 0.87880 1.00651 1.18408 1.00641 0.97800 0.89267 1.21217 1.01017 1.00295 0.92451 1.20899 1.00238 0.96949 0.98263 1.21139 0.97632 0.96246 0.96802 1.21860 1.01082 1.01664 0.90664 1.17495 0.94048 0.93432 0.84271 1.42878 1.71932 1.09237 1.08748 1.16000 0.78483 0.81399 0.84144 1.90846 1.57442 1.52549 1.43409 1.47833 1.74102 1.10007 1.03234 1.21539 0.98658 0.91101 0.89732 1.21948 0.97139 0.99184 0.98887 1.21615 1.00555 0.92741 0.99837 1.18916 0.93911 0.93924 0.91302 0.95276 1.21102 1.51412 0.90476 0.92944 0.92323 1.25059 0.94875 0.99142 0.94957 1.69906 1.49206 1.32413 1.00025 0.86551 0.77663 0.85105 0.78770 1.19815 1.21031 1.20990 1.22162 0.98019 0.75275 1.03804 0.95196 0.91115 0.91130 0.91251 0.91068 0.95188 0.86612 0.86518 0.85868 0.82008 0.75364 0.91883 0.92043 0.92187 0.92154 0.93164 0.93009 0.92716 0.85760 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.34 60.06 0.56 0.86 16 2 N -0.51 -5.65 4.36 -186.67 -0.81 -6.47 16 3 C 0.03 0.24 9.39 60.06 0.56 0.80 16 4 C 0.04 0.47 4.75 -83.54 -0.40 0.07 16 5 C -0.13 -1.52 8.58 -39.41 -0.34 -1.86 16 6 C -0.14 -1.70 10.04 -39.57 -0.40 -2.09 16 7 C -0.10 -1.35 10.04 -39.57 -0.40 -1.75 16 8 C -0.13 -2.20 8.80 -39.43 -0.35 -2.55 16 9 C 0.21 3.30 6.46 -83.42 -0.54 2.76 16 10 N -0.68 -11.24 5.16 -14.07 -0.07 -11.31 16 11 C 0.70 14.41 8.18 -86.92 -0.71 13.70 16 12 O -0.57 -13.82 12.73 5.29 0.07 -13.75 16 13 N -0.62 -12.44 2.98 -178.77 -0.53 -12.97 16 14 C 0.11 1.78 6.38 -3.71 -0.02 1.75 16 15 C -0.13 -2.13 6.08 -26.62 -0.16 -2.29 16 16 C -0.11 -2.16 5.11 -26.69 -0.14 -2.30 16 17 C 0.04 0.95 2.23 -91.88 -0.21 0.75 16 18 H 0.03 0.81 8.14 -51.92 -0.42 0.38 16 19 C -0.52 -14.05 8.56 -34.44 -0.29 -14.34 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 22 N -0.88 -25.57 11.39 55.43 0.63 -24.94 16 23 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 27 C 0.13 3.09 5.39 -3.93 -0.02 3.07 16 28 H 0.03 0.26 7.11 -51.93 -0.37 -0.11 16 29 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.03 0.24 7.37 -51.93 -0.38 -0.14 16 34 H 0.12 1.13 7.02 -52.48 -0.37 0.76 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.16 3.19 5.57 -52.49 -0.29 2.90 16 38 H 0.41 5.81 5.84 -40.82 -0.24 5.57 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.79 5.68 -51.93 -0.29 0.50 16 41 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.12 3.52 5.11 -51.93 -0.27 3.25 16 47 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -30.95 367.51 -10.39 -41.34 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.25 Total: 8.14 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.94 Total: -1.80 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.79 Total: -55.68 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.07 Total: -13.75 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.95 -10.39 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596671335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.860 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds