Wall clock time and date at job start Tue Mar 31 2020 11:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46893 * 111.00366 * 2 1 4 4 C 1.39926 * 110.99525 * 123.95097 * 2 1 3 5 5 C 1.38711 * 120.10244 * 300.29905 * 4 2 1 6 6 C 1.38231 * 119.99447 * 180.29890 * 5 4 2 7 7 C 1.38270 * 120.19221 * 359.69888 * 6 5 4 8 8 C 1.38249 * 120.19690 * 359.97438 * 7 6 5 9 9 C 1.38650 * 120.00181 * 0.04143 * 8 7 6 10 10 N 1.40216 * 120.09592 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99562 * 27.47448 * 10 9 8 12 12 O 1.21590 * 120.00165 * 353.09472 * 11 10 9 13 13 N 1.34777 * 119.99401 * 173.37548 * 11 10 9 14 14 C 1.46920 * 120.63320 * 7.05784 * 13 11 10 15 15 C 1.53191 * 108.77437 * 126.37458 * 14 13 11 16 16 C 1.53032 * 109.31614 * 54.63587 * 15 14 13 17 17 C 1.53042 * 109.54000 * 298.63776 * 16 15 14 18 18 H 1.09011 * 109.49435 * 301.41359 * 17 16 15 19 19 C 1.50695 * 109.50227 * 181.34697 * 17 16 15 20 20 H 1.07997 * 119.99930 * 0.02562 * 19 17 16 21 21 C 1.37878 * 120.00181 * 179.97438 * 19 17 16 22 22 N 1.31522 * 119.99945 * 359.97438 * 21 19 17 23 23 Si 1.86795 * 120.00068 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47356 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47223 * 120.00061 * 23 21 19 26 26 H 1.48501 * 109.47151 * 239.99762 * 23 21 19 27 27 C 1.46932 * 120.62846 * 186.78510 * 13 11 10 28 28 H 1.09003 * 109.47376 * 296.04820 * 1 2 3 29 29 H 1.09001 * 109.47028 * 56.04990 * 1 2 3 30 30 H 1.08997 * 109.47397 * 176.04596 * 1 2 3 31 31 H 1.08997 * 109.47418 * 183.95118 * 3 2 1 32 32 H 1.08999 * 109.47044 * 303.95540 * 3 2 1 33 33 H 1.09004 * 109.47481 * 63.95133 * 3 2 1 34 34 H 1.08006 * 119.99833 * 359.97438 * 5 4 2 35 35 H 1.07996 * 119.90115 * 179.71892 * 6 5 4 36 36 H 1.07998 * 119.90676 * 179.97438 * 7 6 5 37 37 H 1.08001 * 120.00016 * 180.02562 * 8 7 6 38 38 H 0.96991 * 119.99858 * 207.47986 * 10 9 8 39 39 H 1.08998 * 109.59164 * 246.16052 * 14 13 11 40 40 H 1.08997 * 109.58900 * 6.58503 * 14 13 11 41 41 H 1.09007 * 109.49957 * 174.58806 * 15 14 13 42 42 H 1.09001 * 109.49562 * 294.68051 * 15 14 13 43 43 H 1.09001 * 109.46060 * 58.65400 * 16 15 14 44 44 H 1.09004 * 109.46345 * 178.61514 * 16 15 14 45 45 H 0.97000 * 119.99887 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.58494 * 353.41471 * 27 13 11 47 47 H 1.09001 * 109.58978 * 113.83806 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9703 -0.7296 1.0837 5 6 1.6543 -0.3540 2.3810 6 6 2.1558 -1.0726 3.4500 7 6 2.9677 -2.1702 3.2305 8 6 3.2822 -2.5555 1.9406 9 6 2.7839 -1.8404 0.8624 10 7 3.1020 -2.2292 -0.4467 11 6 3.3873 -3.5186 -0.7161 12 8 3.4924 -4.3205 0.1918 13 7 3.5618 -3.9177 -1.9915 14 6 3.5975 -2.9368 -3.0847 15 6 4.8831 -3.1443 -3.8915 16 6 4.9622 -4.6016 -4.3519 17 6 5.0045 -5.5227 -3.1304 18 1 5.8662 -5.2688 -2.5130 19 6 5.1156 -6.9554 -3.5844 20 1 5.1529 -7.1864 -4.6387 21 6 5.1708 -7.9711 -2.6537 22 7 5.1270 -7.6897 -1.3697 23 14 5.3093 -9.7470 -3.2163 24 1 5.3406 -9.7951 -4.7003 25 1 6.5576 -10.3419 -2.6749 26 1 4.1393 -10.5158 -2.7212 27 6 3.7259 -5.3417 -2.3144 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3431 -0.0708 32 1 1.5898 1.9162 -0.8524 33 1 1.7044 1.8724 0.9233 34 1 1.0207 0.5030 2.5560 35 1 1.9126 -0.7762 4.4596 36 1 3.3574 -2.7281 4.0691 37 1 3.9163 -3.4136 1.7728 38 1 3.1168 -1.5702 -1.1582 39 1 2.7326 -3.0798 -3.7324 40 1 3.5843 -1.9283 -2.6714 41 1 4.8766 -2.4878 -4.7616 42 1 5.7459 -2.9128 -3.2669 43 1 4.0866 -4.8396 -4.9559 44 1 5.8639 -4.7461 -4.9471 45 1 5.1662 -8.4043 -0.7149 46 1 3.7972 -5.9195 -1.3929 47 1 2.8716 -5.6849 -2.8980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596671335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:38 Heat of formation + Delta-G solvation = 0.735827 kcal Electronic energy + Delta-G solvation = -27403.585702 eV Core-core repulsion = 23778.990641 eV Total energy + Delta-G solvation = -3624.595061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.93163 -40.48842 -38.60226 -37.29700 -35.88748 -35.10813 -33.48656 -31.58982 -30.94429 -30.17281 -28.45072 -27.04515 -26.19767 -25.44972 -23.71677 -23.38655 -22.02596 -21.59909 -20.32255 -19.34319 -18.56209 -18.02622 -17.55891 -16.76877 -16.58811 -16.30626 -15.98077 -15.86792 -15.35080 -15.25385 -15.22918 -14.74071 -14.55672 -14.50627 -14.22556 -14.07791 -13.63062 -13.49139 -13.15437 -13.04925 -12.90646 -12.88674 -12.60419 -12.59058 -12.28933 -12.26900 -12.20620 -11.84400 -11.64143 -11.46115 -11.02546 -10.93533 -10.73396 -10.51575 -9.71970 -9.55340 -9.47446 -8.84696 -8.09044 -6.26662 0.31757 0.43663 1.40287 1.42115 1.54136 1.66383 2.12214 2.42747 2.83297 2.88389 2.97885 3.19669 3.97703 4.00395 4.12339 4.19059 4.20731 4.27954 4.41291 4.45289 4.48856 4.58083 4.61261 4.67036 4.72582 4.75943 4.79904 4.84567 4.95659 5.01232 5.03822 5.10123 5.19395 5.26705 5.28556 5.35693 5.40137 5.55265 5.57813 5.62192 5.68781 5.88130 5.93073 5.96921 5.97648 6.14677 6.35770 6.43161 6.86648 7.01987 7.43380 7.56728 8.94183 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018473 B = 0.003562 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.374362 B = 7859.511022 C = 8933.422026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.521 5.521 3 C 0.028 3.972 4 C 0.048 3.952 5 C -0.125 4.125 6 C -0.130 4.130 7 C -0.108 4.108 8 C -0.160 4.160 9 C 0.173 3.827 10 N -0.661 5.661 11 C 0.691 3.309 12 O -0.615 6.615 13 N -0.621 5.621 14 C 0.109 3.891 15 C -0.125 4.125 16 C -0.104 4.104 17 C 0.037 3.963 18 H -0.016 1.016 19 C -0.534 4.534 20 H 0.063 0.937 21 C 0.009 3.991 22 N -0.914 5.914 23 Si 0.958 3.042 24 H -0.259 1.259 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.143 3.857 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.136 0.864 37 H 0.120 0.880 38 H 0.419 0.581 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.259 0.741 46 H 0.077 0.923 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.008 21.793 2.562 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.242 5.242 3 C -0.119 4.119 4 C -0.049 4.049 5 C -0.145 4.145 6 C -0.150 4.150 7 C -0.126 4.126 8 C -0.182 4.182 9 C 0.075 3.925 10 N -0.310 5.310 11 C 0.393 3.607 12 O -0.495 6.495 13 N -0.356 5.356 14 C -0.013 4.013 15 C -0.163 4.163 16 C -0.142 4.142 17 C 0.018 3.982 18 H 0.002 0.998 19 C -0.573 4.573 20 H 0.081 0.919 21 C -0.190 4.190 22 N -0.553 5.553 23 Si 0.783 3.217 24 H -0.183 1.183 25 H -0.210 1.210 26 H -0.209 1.209 27 C 0.021 3.979 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.059 0.941 34 H 0.166 0.834 35 H 0.170 0.830 36 H 0.153 0.847 37 H 0.138 0.862 38 H 0.260 0.740 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.787 20.891 2.780 22.834 hybrid contribution 0.188 -1.017 0.445 1.126 sum -8.599 19.875 3.225 21.894 Atomic orbital electron populations 1.22447 0.84807 1.02069 1.02169 1.59483 1.09529 1.15028 1.40199 1.22529 1.00676 0.86503 1.02163 1.18505 0.99116 0.96532 0.90765 1.21596 1.00527 1.00781 0.91581 1.21281 0.98217 0.95310 1.00145 1.21311 0.98220 0.97329 0.95768 1.21633 1.02256 1.01460 0.92822 1.17738 0.96153 0.95143 0.83431 1.42516 1.71306 1.07579 1.09626 1.16212 0.78346 0.82422 0.83718 1.90834 1.59377 1.54339 1.44945 1.47724 1.74095 1.09346 1.04446 1.21879 0.99335 0.91357 0.88693 1.21908 0.96769 0.97240 1.00398 1.21501 1.01037 0.94200 0.97432 1.18849 0.92158 0.94322 0.92860 0.99759 1.21537 1.50658 0.91981 0.93117 0.91854 1.25908 0.94663 1.03546 0.94892 1.70116 1.50533 1.33364 1.01266 0.85509 0.77389 0.79857 0.78929 1.18326 1.20951 1.20892 1.21552 0.97575 0.77518 1.01294 0.93875 0.88974 0.93096 0.91889 0.89006 0.94103 0.83442 0.83017 0.84661 0.86246 0.74012 0.89822 0.88800 0.87507 0.93397 0.92192 0.92889 0.93210 0.90437 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.34 127.69 1.19 1.70 16 2 N -0.52 -10.11 4.36 -744.51 -3.25 -13.36 16 3 C 0.03 0.38 9.39 127.69 1.20 1.58 16 4 C 0.05 1.17 4.75 38.25 0.18 1.35 16 5 C -0.12 -2.54 8.58 22.38 0.19 -2.34 16 6 C -0.13 -2.73 10.04 22.28 0.22 -2.51 16 7 C -0.11 -2.95 10.04 22.28 0.22 -2.72 16 8 C -0.16 -5.72 8.80 22.37 0.20 -5.52 16 9 C 0.17 5.62 6.46 38.19 0.25 5.87 16 10 N -0.66 -22.29 5.16 -316.68 -1.64 -23.92 16 11 C 0.69 30.18 8.18 179.05 1.47 31.65 16 12 O -0.61 -32.87 12.73 -4.00 -0.05 -32.92 16 13 N -0.62 -25.88 2.98 -837.75 -2.50 -28.38 16 14 C 0.11 3.22 6.38 86.36 0.55 3.77 16 15 C -0.13 -3.74 6.08 30.67 0.19 -3.56 16 16 C -0.10 -4.03 5.11 30.62 0.16 -3.88 16 17 C 0.04 1.92 2.23 -11.61 -0.03 1.90 16 18 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 19 C -0.53 -29.75 8.56 25.60 0.22 -29.53 16 20 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 21 C 0.01 0.53 5.30 84.65 0.45 0.98 16 22 N -0.91 -56.57 11.39 21.45 0.24 -56.32 16 23 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 27 C 0.14 7.31 5.39 86.22 0.46 7.78 16 28 H 0.04 0.57 7.11 -2.39 -0.02 0.56 16 29 H 0.09 1.08 8.12 -2.39 -0.02 1.06 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16 33 H 0.04 0.48 7.37 -2.38 -0.02 0.46 16 34 H 0.15 2.11 7.02 -2.91 -0.02 2.09 16 35 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.12 5.29 5.57 -2.91 -0.02 5.28 16 38 H 0.42 11.51 5.84 -92.71 -0.54 10.97 16 39 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.09 2.16 5.68 -2.39 -0.01 2.14 16 41 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.08 4.75 5.11 -2.39 -0.01 4.74 16 47 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -75.01 367.51 2.39 -72.62 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.43 Total: 28.93 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 7.12 Total: 6.51 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -7.13 Total: -121.98 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.05 Total: -32.92 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -75.01 2.39 -72.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596671335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.355 kcal (2) G-P(sol) polarization free energy of solvation -75.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds