Wall clock time and date at job start Tue Mar 31 2020 11:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 111.00036 * 2 1 4 4 C 1.39925 * 111.00427 * 123.95761 * 2 1 3 5 5 C 1.38711 * 120.09222 * 299.95298 * 4 2 1 6 6 C 1.38232 * 119.98774 * 180.02562 * 5 4 2 7 7 C 1.38272 * 120.19304 * 359.97438 * 6 5 4 8 8 C 1.38242 * 120.19731 * 0.02677 * 7 6 5 9 9 C 1.38651 * 120.00324 * 359.97438 * 8 7 6 10 10 N 1.40205 * 120.09602 * 179.97438 * 9 8 7 11 11 C 1.34779 * 119.99823 * 17.19332 * 10 9 8 12 12 O 1.21593 * 120.00259 * 4.66771 * 11 10 9 13 13 N 1.34779 * 120.00040 * 184.66696 * 11 10 9 14 14 C 1.46921 * 120.62834 * 4.56644 * 13 11 10 15 15 C 1.52767 * 109.00970 * 233.58383 * 14 13 11 16 16 C 1.53041 * 109.38031 * 305.58885 * 15 14 13 17 17 C 1.53047 * 109.53637 * 61.23951 * 16 15 14 18 18 H 1.08999 * 109.49511 * 58.58544 * 17 16 15 19 19 C 1.50698 * 109.49379 * 178.68324 * 17 16 15 20 20 H 1.08008 * 120.00582 * 359.83525 * 19 17 16 21 21 C 1.37874 * 119.99946 * 179.83774 * 19 17 16 22 22 N 1.31519 * 120.00262 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 120.00361 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46722 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47224 * 119.99865 * 23 21 19 26 26 H 1.48501 * 109.47478 * 240.00064 * 23 21 19 27 27 C 1.46924 * 120.62979 * 184.84632 * 13 11 10 28 28 H 1.09002 * 109.46940 * 296.04023 * 1 2 3 29 29 H 1.08994 * 109.47666 * 56.04554 * 1 2 3 30 30 H 1.09011 * 109.46760 * 176.04817 * 1 2 3 31 31 H 1.08997 * 109.47142 * 183.95957 * 3 2 1 32 32 H 1.09000 * 109.46905 * 303.95428 * 3 2 1 33 33 H 1.08999 * 109.47066 * 63.95622 * 3 2 1 34 34 H 1.08000 * 120.00610 * 0.04324 * 5 4 2 35 35 H 1.08005 * 119.90012 * 180.26273 * 6 5 4 36 36 H 1.08008 * 119.89886 * 180.02562 * 7 6 5 37 37 H 1.07997 * 119.99912 * 179.97438 * 8 7 6 38 38 H 0.96996 * 120.00568 * 197.19467 * 10 9 8 39 39 H 1.09005 * 109.59094 * 353.41794 * 14 13 11 40 40 H 1.08996 * 109.58930 * 113.84320 * 14 13 11 41 41 H 1.09000 * 109.56738 * 185.55172 * 15 14 13 42 42 H 1.08998 * 109.38525 * 65.51422 * 15 14 13 43 43 H 1.08995 * 109.46404 * 301.21629 * 16 15 14 44 44 H 1.09003 * 109.45915 * 181.25774 * 16 15 14 45 45 H 0.97003 * 120.00490 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.58408 * 246.15705 * 27 13 11 47 47 H 1.09000 * 109.58673 * 6.43951 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9705 -0.7297 1.0835 5 6 1.6604 -0.3498 2.3810 6 6 2.1575 -1.0719 3.4498 7 6 2.9636 -2.1736 3.2300 8 6 3.2777 -2.5591 1.9401 9 6 2.7835 -1.8407 0.8620 10 7 3.1012 -2.2296 -0.4470 11 6 3.5808 -3.4666 -0.6848 12 8 3.6581 -4.2734 0.2216 13 7 3.9746 -3.8093 -1.9274 14 6 3.9813 -2.8169 -3.0109 15 6 3.1780 -3.3625 -4.1902 16 6 3.7292 -4.7332 -4.5894 17 6 3.5863 -5.7041 -3.4150 18 1 2.5365 -5.7810 -3.1322 19 6 4.0996 -7.0620 -3.8197 20 1 4.4866 -7.2182 -4.8159 21 6 4.0753 -8.1049 -2.9182 22 7 3.6036 -7.9149 -1.7053 23 14 4.7109 -9.7883 -3.4200 24 1 5.1835 -9.7397 -4.8270 25 1 5.8370 -10.1767 -2.5332 26 1 3.6182 -10.7865 -3.2986 27 6 4.3995 -5.1837 -2.2256 28 1 -0.3633 0.4512 0.9234 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0708 31 1 3.0827 1.3433 -0.0710 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.0305 0.5098 2.5562 35 1 1.9116 -0.7774 4.4594 36 1 3.3491 -2.7346 4.0686 37 1 3.9079 -3.4198 1.7721 38 1 2.9760 -1.6086 -1.1815 39 1 3.5284 -1.8896 -2.6599 40 1 5.0071 -2.6282 -3.3272 41 1 3.2586 -2.6780 -5.0346 42 1 2.1319 -3.4613 -3.9006 43 1 4.7818 -4.6379 -4.8558 44 1 3.1714 -5.1138 -5.4451 45 1 3.5862 -8.6488 -1.0712 46 1 5.4602 -5.1919 -2.4766 47 1 4.2249 -5.8170 -1.3558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596671336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:43 Heat of formation + Delta-G solvation = 21.598401 kcal Electronic energy + Delta-G solvation = -27442.167208 eV Core-core repulsion = 23818.476816 eV Total energy + Delta-G solvation = -3623.690392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.63508 -39.23500 -37.13081 -36.25252 -34.41743 -33.28250 -31.84730 -29.90674 -29.85203 -28.96118 -27.74957 -25.10150 -24.72840 -24.49149 -22.41226 -21.83050 -21.02459 -20.02990 -18.76083 -17.96652 -17.10766 -16.54178 -16.15787 -15.42606 -15.19266 -14.91950 -14.76291 -14.53816 -14.11866 -13.91894 -13.77004 -13.56102 -13.43698 -12.86109 -12.71372 -12.56220 -12.39135 -12.34716 -12.07380 -12.01813 -11.86133 -11.69668 -11.24107 -11.00177 -10.90591 -10.49963 -10.38776 -10.32203 -10.19701 -9.89960 -9.26051 -9.11609 -8.94820 -8.69214 -8.62459 -8.42714 -7.94256 -7.51327 -5.98775 -4.07676 1.39325 1.57228 3.08989 3.31555 3.39634 3.42433 3.58672 3.73891 4.06737 4.28571 4.44854 4.91977 5.00157 5.13423 5.16488 5.24269 5.26175 5.31428 5.31741 5.42042 5.48441 5.60108 5.63288 5.69002 5.73915 5.76793 5.97533 6.06469 6.15908 6.29052 6.30986 6.43344 6.58599 6.65322 6.67209 6.70154 6.79793 6.81345 6.97141 7.00756 7.08611 7.31939 7.43671 7.48237 7.73777 7.90692 8.04796 8.39854 8.46606 8.95832 9.09884 9.58119 11.06436 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018047 B = 0.003621 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.142809 B = 7730.223715 C = 8808.584402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.508 5.508 3 C 0.028 3.972 4 C 0.030 3.970 5 C -0.126 4.126 6 C -0.148 4.148 7 C -0.097 4.097 8 C -0.145 4.145 9 C 0.211 3.789 10 N -0.677 5.677 11 C 0.698 3.302 12 O -0.566 6.566 13 N -0.615 5.615 14 C 0.112 3.888 15 C -0.134 4.134 16 C -0.110 4.110 17 C 0.039 3.961 18 H 0.029 0.971 19 C -0.521 4.521 20 H 0.059 0.941 21 C 0.063 3.937 22 N -0.879 5.879 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.128 3.872 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.030 0.970 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.169 0.831 38 H 0.410 0.590 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.263 0.737 46 H 0.042 0.958 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 19.084 4.260 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.229 5.229 3 C -0.119 4.119 4 C -0.067 4.067 5 C -0.146 4.146 6 C -0.168 4.168 7 C -0.115 4.115 8 C -0.166 4.166 9 C 0.111 3.889 10 N -0.324 5.324 11 C 0.400 3.600 12 O -0.443 6.443 13 N -0.350 5.350 14 C -0.012 4.012 15 C -0.172 4.172 16 C -0.147 4.147 17 C 0.019 3.981 18 H 0.047 0.953 19 C -0.559 4.559 20 H 0.077 0.923 21 C -0.140 4.140 22 N -0.517 5.517 23 Si 0.719 3.281 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.008 3.992 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.186 0.814 38 H 0.249 0.751 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.990 18.110 4.494 18.897 hybrid contribution -0.181 -0.082 0.088 0.217 sum -3.171 18.028 4.582 18.870 Atomic orbital electron populations 1.22429 0.85903 1.02837 1.00499 1.59480 1.08597 1.13762 1.41076 1.22461 1.00942 0.87880 1.00646 1.18314 1.01410 0.97674 0.89310 1.21198 1.00829 1.00172 0.92415 1.20889 1.00651 0.97070 0.98233 1.21136 0.97524 0.96096 0.96780 1.22043 1.01853 1.02076 0.90582 1.17532 0.93960 0.93112 0.84258 1.42943 1.66499 1.15142 1.07828 1.16001 0.78678 0.81233 0.84091 1.90776 1.61106 1.50068 1.42377 1.47874 1.67500 1.13476 1.06186 1.21479 1.00242 0.90669 0.88763 1.21879 0.99911 0.98762 0.96671 1.21617 0.99545 0.93585 1.00001 1.19000 0.96594 0.92714 0.89750 0.95316 1.21105 1.42425 0.93673 0.98718 0.92293 1.25056 0.95005 0.98932 0.95017 1.69897 1.45014 1.32097 1.04667 0.86544 0.78611 0.84301 0.78594 1.19803 1.20961 1.21032 1.22262 0.96534 0.76811 1.03633 0.95171 0.91091 0.91045 0.91287 0.91078 0.95179 0.86630 0.86579 0.85932 0.81391 0.75123 0.91982 0.91788 0.92139 0.92125 0.93132 0.92987 0.92687 0.93944 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.35 60.06 0.56 0.86 16 2 N -0.51 -5.78 4.24 -186.67 -0.79 -6.57 16 3 C 0.03 0.25 9.39 60.07 0.56 0.81 16 4 C 0.03 0.40 4.75 -83.54 -0.40 0.00 16 5 C -0.13 -1.51 8.58 -39.41 -0.34 -1.85 16 6 C -0.15 -1.78 10.04 -39.57 -0.40 -2.18 16 7 C -0.10 -1.32 10.04 -39.57 -0.40 -1.72 16 8 C -0.14 -2.42 8.83 -39.43 -0.35 -2.77 16 9 C 0.21 3.40 6.55 -83.42 -0.55 2.86 16 10 N -0.68 -11.29 5.24 -14.07 -0.07 -11.36 16 11 C 0.70 14.38 8.17 -86.91 -0.71 13.67 16 12 O -0.57 -13.68 12.55 5.28 0.07 -13.62 16 13 N -0.61 -12.35 2.98 -178.76 -0.53 -12.89 16 14 C 0.11 1.75 6.41 -3.93 -0.03 1.72 16 15 C -0.13 -2.13 6.07 -26.83 -0.16 -2.29 16 16 C -0.11 -2.15 5.11 -26.69 -0.14 -2.29 16 17 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 18 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.52 -14.00 8.56 -34.44 -0.29 -14.30 16 20 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 21 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 22 N -0.88 -25.57 11.39 55.43 0.63 -24.94 16 23 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.13 3.08 5.39 -3.71 -0.02 3.06 16 28 H 0.03 0.27 7.13 -51.93 -0.37 -0.10 16 29 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 30 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 33 H 0.03 0.25 7.35 -51.93 -0.38 -0.13 16 34 H 0.12 1.15 7.02 -52.49 -0.37 0.78 16 35 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 36 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 37 H 0.17 3.27 5.22 -52.62 -0.27 3.00 16 38 H 0.41 5.93 5.61 -40.82 -0.23 5.70 16 39 H 0.06 0.80 5.57 -51.93 -0.29 0.51 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.12 3.48 5.15 -51.93 -0.27 3.22 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -30.80 366.78 -10.36 -41.16 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.22 Total: 8.55 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -2.95 Total: -2.04 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.77 Total: -55.75 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.07 Total: -13.62 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.80 -10.36 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596671336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.759 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds