Wall clock time and date at job start Tue Mar 31 2020 11:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 111.00036 * 2 1 4 4 C 1.39925 * 111.00427 * 123.95761 * 2 1 3 5 5 C 1.38711 * 120.09222 * 299.95298 * 4 2 1 6 6 C 1.38232 * 119.98774 * 180.02562 * 5 4 2 7 7 C 1.38272 * 120.19304 * 359.97438 * 6 5 4 8 8 C 1.38242 * 120.19731 * 0.02677 * 7 6 5 9 9 C 1.38651 * 120.00324 * 359.97438 * 8 7 6 10 10 N 1.40205 * 120.09602 * 179.97438 * 9 8 7 11 11 C 1.34779 * 119.99823 * 17.19332 * 10 9 8 12 12 O 1.21593 * 120.00259 * 4.66771 * 11 10 9 13 13 N 1.34779 * 120.00040 * 184.66696 * 11 10 9 14 14 C 1.46921 * 120.62834 * 4.56644 * 13 11 10 15 15 C 1.52767 * 109.00970 * 233.58383 * 14 13 11 16 16 C 1.53041 * 109.38031 * 305.58885 * 15 14 13 17 17 C 1.53047 * 109.53637 * 61.23951 * 16 15 14 18 18 H 1.08999 * 109.49511 * 58.58544 * 17 16 15 19 19 C 1.50698 * 109.49379 * 178.68324 * 17 16 15 20 20 H 1.08008 * 120.00582 * 359.83525 * 19 17 16 21 21 C 1.37874 * 119.99946 * 179.83774 * 19 17 16 22 22 N 1.31519 * 120.00262 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 120.00361 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46722 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47224 * 119.99865 * 23 21 19 26 26 H 1.48501 * 109.47478 * 240.00064 * 23 21 19 27 27 C 1.46924 * 120.62979 * 184.84632 * 13 11 10 28 28 H 1.09002 * 109.46940 * 296.04023 * 1 2 3 29 29 H 1.08994 * 109.47666 * 56.04554 * 1 2 3 30 30 H 1.09011 * 109.46760 * 176.04817 * 1 2 3 31 31 H 1.08997 * 109.47142 * 183.95957 * 3 2 1 32 32 H 1.09000 * 109.46905 * 303.95428 * 3 2 1 33 33 H 1.08999 * 109.47066 * 63.95622 * 3 2 1 34 34 H 1.08000 * 120.00610 * 0.04324 * 5 4 2 35 35 H 1.08005 * 119.90012 * 180.26273 * 6 5 4 36 36 H 1.08008 * 119.89886 * 180.02562 * 7 6 5 37 37 H 1.07997 * 119.99912 * 179.97438 * 8 7 6 38 38 H 0.96996 * 120.00568 * 197.19467 * 10 9 8 39 39 H 1.09005 * 109.59094 * 353.41794 * 14 13 11 40 40 H 1.08996 * 109.58930 * 113.84320 * 14 13 11 41 41 H 1.09000 * 109.56738 * 185.55172 * 15 14 13 42 42 H 1.08998 * 109.38525 * 65.51422 * 15 14 13 43 43 H 1.08995 * 109.46404 * 301.21629 * 16 15 14 44 44 H 1.09003 * 109.45915 * 181.25774 * 16 15 14 45 45 H 0.97003 * 120.00490 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.58408 * 246.15705 * 27 13 11 47 47 H 1.09000 * 109.58673 * 6.43951 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9705 -0.7297 1.0835 5 6 1.6604 -0.3498 2.3810 6 6 2.1575 -1.0719 3.4498 7 6 2.9636 -2.1736 3.2300 8 6 3.2777 -2.5591 1.9401 9 6 2.7835 -1.8407 0.8620 10 7 3.1012 -2.2296 -0.4470 11 6 3.5808 -3.4666 -0.6848 12 8 3.6581 -4.2734 0.2216 13 7 3.9746 -3.8093 -1.9274 14 6 3.9813 -2.8169 -3.0109 15 6 3.1780 -3.3625 -4.1902 16 6 3.7292 -4.7332 -4.5894 17 6 3.5863 -5.7041 -3.4150 18 1 2.5365 -5.7810 -3.1322 19 6 4.0996 -7.0620 -3.8197 20 1 4.4866 -7.2182 -4.8159 21 6 4.0753 -8.1049 -2.9182 22 7 3.6036 -7.9149 -1.7053 23 14 4.7109 -9.7883 -3.4200 24 1 5.1835 -9.7397 -4.8270 25 1 5.8370 -10.1767 -2.5332 26 1 3.6182 -10.7865 -3.2986 27 6 4.3995 -5.1837 -2.2256 28 1 -0.3633 0.4512 0.9234 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0708 31 1 3.0827 1.3433 -0.0710 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.0305 0.5098 2.5562 35 1 1.9116 -0.7774 4.4594 36 1 3.3491 -2.7346 4.0686 37 1 3.9079 -3.4198 1.7721 38 1 2.9760 -1.6086 -1.1815 39 1 3.5284 -1.8896 -2.6599 40 1 5.0071 -2.6282 -3.3272 41 1 3.2586 -2.6780 -5.0346 42 1 2.1319 -3.4613 -3.9006 43 1 4.7818 -4.6379 -4.8558 44 1 3.1714 -5.1138 -5.4451 45 1 3.5862 -8.6488 -1.0712 46 1 5.4602 -5.1919 -2.4766 47 1 4.2249 -5.8170 -1.3558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596671336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:42 Heat of formation + Delta-G solvation = 3.098488 kcal Electronic energy + Delta-G solvation = -27442.969425 eV Core-core repulsion = 23818.476816 eV Total energy + Delta-G solvation = -3624.492608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.97890 -40.48751 -38.63133 -37.28430 -35.91657 -35.11772 -33.50158 -31.59830 -30.93144 -30.18061 -28.45459 -27.05069 -26.20747 -25.46515 -23.72702 -23.39431 -22.05836 -21.60678 -20.28546 -19.35816 -18.59880 -18.01986 -17.60605 -16.80125 -16.48586 -16.30736 -16.00622 -15.87986 -15.35583 -15.29604 -15.24999 -14.77730 -14.61673 -14.44830 -14.27739 -13.96037 -13.61852 -13.56416 -13.14804 -13.08884 -12.90803 -12.86260 -12.62802 -12.59585 -12.29938 -12.24658 -12.20710 -11.83263 -11.65699 -11.57200 -11.05535 -10.92599 -10.69114 -10.51065 -9.71111 -9.55763 -9.48461 -8.80132 -8.09968 -6.27131 0.32995 0.45379 1.40146 1.42247 1.54143 1.63433 2.11865 2.42529 2.83284 2.88941 2.97017 3.19312 3.96502 3.99980 4.13836 4.17288 4.21005 4.27599 4.41040 4.45208 4.49328 4.57840 4.61702 4.66625 4.72088 4.75615 4.79251 4.84097 4.95890 5.00920 5.03403 5.10109 5.19046 5.26006 5.28378 5.35346 5.40604 5.54683 5.57936 5.61296 5.69377 5.87595 5.93758 5.96079 5.96941 6.14133 6.34990 6.43060 6.85846 7.00410 7.42969 7.53920 8.93571 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018047 B = 0.003621 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.142809 B = 7730.223715 C = 8808.584402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.522 5.522 3 C 0.028 3.972 4 C 0.041 3.959 5 C -0.122 4.122 6 C -0.136 4.136 7 C -0.105 4.105 8 C -0.173 4.173 9 C 0.176 3.824 10 N -0.660 5.660 11 C 0.690 3.310 12 O -0.613 6.613 13 N -0.620 5.620 14 C 0.108 3.892 15 C -0.125 4.125 16 C -0.104 4.104 17 C 0.038 3.962 18 H -0.015 1.015 19 C -0.534 4.534 20 H 0.063 0.937 21 C 0.010 3.990 22 N -0.915 5.915 23 Si 0.958 3.042 24 H -0.259 1.259 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.143 3.857 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.420 0.580 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.259 0.741 46 H 0.038 0.962 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 22.413 3.478 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.244 5.244 3 C -0.118 4.118 4 C -0.056 4.056 5 C -0.142 4.142 6 C -0.155 4.155 7 C -0.123 4.123 8 C -0.194 4.194 9 C 0.079 3.921 10 N -0.308 5.308 11 C 0.393 3.607 12 O -0.493 6.493 13 N -0.355 5.355 14 C -0.014 4.014 15 C -0.163 4.163 16 C -0.142 4.142 17 C 0.018 3.982 18 H 0.003 0.997 19 C -0.572 4.572 20 H 0.082 0.918 21 C -0.190 4.190 22 N -0.554 5.554 23 Si 0.783 3.217 24 H -0.183 1.183 25 H -0.209 1.209 26 H -0.209 1.209 27 C 0.021 3.979 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.059 0.941 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.261 0.739 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.672 21.513 3.683 22.132 hybrid contribution -0.029 -1.025 0.397 1.099 sum -3.702 20.488 4.080 21.216 Atomic orbital electron populations 1.22457 0.84890 1.02037 1.02200 1.59462 1.09486 1.15144 1.40267 1.22525 1.00683 0.86440 1.02149 1.18433 0.99914 0.96494 0.90789 1.21572 1.00375 1.00697 0.91573 1.21274 0.98676 0.95506 1.00072 1.21323 0.98032 0.97134 0.95829 1.21835 1.03001 1.01935 0.92630 1.17789 0.96065 0.94803 0.83492 1.42599 1.65842 1.13637 1.08721 1.16214 0.78719 0.82105 0.83680 1.90770 1.62833 1.51842 1.43904 1.47763 1.67422 1.12905 1.07396 1.21819 1.01853 0.90476 0.87287 1.21832 0.98844 0.97341 0.98264 1.21504 1.00468 0.94549 0.97661 1.18931 0.93686 0.93614 0.91946 0.99667 1.21542 1.41845 0.95080 0.98782 0.91831 1.25900 0.95308 1.02875 0.94883 1.70102 1.46592 1.32871 1.05842 0.85510 0.77832 0.79593 0.78757 1.18322 1.20897 1.20946 1.21652 0.96074 0.78681 1.01498 0.93823 0.88951 0.93203 0.91824 0.89035 0.94093 0.83536 0.83126 0.84587 0.85187 0.73868 0.88794 0.89812 0.87488 0.93253 0.92227 0.92827 0.93188 0.94408 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.35 127.69 1.19 1.71 16 2 N -0.52 -10.48 4.24 -744.48 -3.16 -13.63 16 3 C 0.03 0.40 9.39 127.69 1.20 1.60 16 4 C 0.04 1.02 4.75 38.25 0.18 1.21 16 5 C -0.12 -2.55 8.58 22.38 0.19 -2.36 16 6 C -0.14 -2.90 10.04 22.28 0.22 -2.68 16 7 C -0.10 -2.86 10.04 22.28 0.22 -2.64 16 8 C -0.17 -6.13 8.83 22.37 0.20 -5.93 16 9 C 0.18 5.80 6.55 38.19 0.25 6.05 16 10 N -0.66 -22.44 5.24 -316.68 -1.66 -24.10 16 11 C 0.69 30.08 8.17 179.05 1.46 31.54 16 12 O -0.61 -32.36 12.55 -4.01 -0.05 -32.41 16 13 N -0.62 -25.73 2.98 -837.74 -2.49 -28.23 16 14 C 0.11 3.16 6.41 86.22 0.55 3.71 16 15 C -0.12 -3.69 6.07 30.53 0.19 -3.50 16 16 C -0.10 -4.00 5.11 30.62 0.16 -3.85 16 17 C 0.04 1.92 2.25 -11.46 -0.03 1.89 16 18 H -0.01 -0.88 8.14 -2.39 -0.02 -0.89 16 19 C -0.53 -29.58 8.56 25.60 0.22 -29.36 16 20 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 21 C 0.01 0.55 5.30 84.65 0.45 1.00 16 22 N -0.92 -56.41 11.39 21.45 0.24 -56.17 16 23 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 27 C 0.14 7.29 5.39 86.36 0.47 7.76 16 28 H 0.04 0.62 7.13 -2.39 -0.02 0.60 16 29 H 0.09 1.17 8.12 -2.39 -0.02 1.15 16 30 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 0.93 8.12 -2.39 -0.02 0.91 16 33 H 0.04 0.50 7.35 -2.39 -0.02 0.48 16 34 H 0.15 2.19 7.02 -2.91 -0.02 2.17 16 35 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 37 H 0.13 5.64 5.22 -4.93 -0.03 5.62 16 38 H 0.42 11.77 5.61 -92.71 -0.52 11.25 16 39 H 0.09 2.16 5.57 -2.38 -0.01 2.15 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 46 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.08 4.70 5.15 -2.39 -0.01 4.69 16 Total: -1.00 -74.20 366.78 2.47 -71.72 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.44 Total: 29.97 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 7.13 Total: 6.15 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -7.07 Total: -122.12 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.05 Total: -32.41 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -74.20 2.47 -71.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596671336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.819 kcal (2) G-P(sol) polarization free energy of solvation -74.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds