Wall clock time and date at job start Tue Mar 31 2020 11:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34252 * 125.75893 * 2 1 4 4 C 1.38041 * 107.42074 * 179.97438 * 3 2 1 5 5 C 1.47429 * 126.41965 * 179.97438 * 4 3 2 6 6 O 1.21602 * 120.00517 * 220.90539 * 5 4 3 7 7 N 1.34783 * 119.99741 * 41.17609 * 5 4 3 8 8 C 1.46930 * 120.62883 * 4.96838 * 7 5 4 9 9 C 1.53622 * 108.53943 * 126.36629 * 8 7 5 10 10 C 1.53041 * 109.24358 * 54.85838 * 9 8 7 11 11 C 1.53042 * 109.53777 * 298.50686 * 10 9 8 12 12 H 1.08998 * 109.49536 * 301.41808 * 11 10 9 13 13 C 1.50694 * 109.50198 * 181.31509 * 11 10 9 14 14 H 1.08005 * 119.99722 * 0.16605 * 13 11 10 15 15 C 1.37880 * 120.00376 * 180.16034 * 13 11 10 16 16 N 1.31512 * 119.99933 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99943 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47034 * 90.00588 * 17 15 13 19 19 H 1.48503 * 109.46799 * 210.00252 * 17 15 13 20 20 H 1.48501 * 109.47244 * 330.00185 * 17 15 13 21 21 C 1.46918 * 120.62938 * 185.24544 * 7 5 4 22 22 C 1.41295 * 107.16998 * 0.21829 * 4 3 2 23 23 C 1.50700 * 125.99040 * 179.77234 * 22 4 3 24 24 C 1.53779 * 113.61337 * 217.50034 * 23 22 4 25 25 C 1.53784 * 87.07884 * 220.02116 * 24 23 22 26 26 C 1.53772 * 87.08099 * 25.43313 * 25 24 23 27 27 N 1.30451 * 108.01828 * 359.62229 * 22 4 3 28 28 H 1.08999 * 109.47144 * 90.00278 * 1 2 3 29 29 H 1.08997 * 109.47251 * 210.00926 * 1 2 3 30 30 H 1.09003 * 109.46953 * 330.00713 * 1 2 3 31 31 H 1.08007 * 126.29119 * 359.97051 * 3 2 1 32 32 H 1.08997 * 109.58354 * 246.19816 * 8 7 5 33 33 H 1.08997 * 109.58856 * 6.62708 * 8 7 5 34 34 H 1.08995 * 109.63849 * 294.86085 * 9 8 7 35 35 H 1.09002 * 109.45985 * 174.73879 * 9 8 7 36 36 H 1.08999 * 109.46207 * 178.49106 * 10 9 8 37 37 H 1.09004 * 109.45161 * 58.51711 * 10 9 8 38 38 H 0.96991 * 120.00443 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.59072 * 353.37648 * 21 7 5 40 40 H 1.09006 * 109.58821 * 113.79921 * 21 7 5 41 41 H 1.08999 * 112.85031 * 348.81113 * 23 22 4 42 42 H 1.08994 * 113.61761 * 334.56637 * 24 23 22 43 43 H 1.08998 * 113.61230 * 105.47393 * 24 23 22 44 44 H 1.09005 * 113.61255 * 270.88479 * 25 24 23 45 45 H 1.08999 * 113.61345 * 139.98445 * 25 24 23 46 46 H 1.08998 * 113.61656 * 220.01783 * 26 25 24 47 47 H 1.09003 * 113.69405 * 89.13248 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.0894 0.0000 4 6 3.5599 0.6551 0.0006 5 6 4.7639 1.5058 0.0003 6 8 5.7200 1.2062 -0.6889 7 7 4.8071 2.6128 0.7680 8 6 3.7082 2.9267 1.6914 9 6 4.2951 3.1379 3.0953 10 6 5.3861 4.2092 3.0300 11 6 6.5103 3.7390 2.1042 12 1 6.9182 2.7990 2.4756 13 6 7.5990 4.7803 2.0657 14 1 7.5007 5.6859 2.6459 15 6 8.7206 4.5768 1.2901 16 7 8.8402 3.4742 0.5833 17 14 10.0704 5.8672 1.2431 18 1 11.0624 5.5850 2.3115 19 1 10.7439 5.8310 -0.0799 20 1 9.4778 7.2115 1.4602 21 6 5.9512 3.5315 0.6931 22 6 3.5311 -0.7575 -0.0042 23 6 4.7321 -1.6678 -0.0102 24 6 4.5457 -2.9278 -0.8719 25 6 5.2793 -3.6995 0.2378 26 6 4.8003 -2.6056 1.2066 27 7 2.2826 -1.1357 0.0008 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5140 30 1 -0.3633 0.8901 0.5137 31 1 1.9167 2.1169 -0.0004 32 1 3.2032 3.8351 1.3630 33 1 2.9995 2.0988 1.7109 34 1 4.7239 2.2036 3.4575 35 1 3.5062 3.4631 3.7735 36 1 5.7865 4.3811 4.0291 37 1 4.9619 5.1363 2.6442 38 1 9.6290 3.3311 0.0374 39 1 6.7228 3.1029 0.0536 40 1 5.6254 4.4883 0.2848 41 1 5.6641 -1.1375 -0.2056 42 1 3.5037 -3.2233 -0.9936 43 1 5.0908 -2.8961 -1.8153 44 1 6.3614 -3.7257 0.1093 45 1 4.8524 -4.6813 0.4423 46 1 5.5508 -2.3137 1.9412 47 1 3.8280 -2.8118 1.6541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:52 Heat of formation + Delta-G solvation = 57.323419 kcal Electronic energy + Delta-G solvation = -27579.750928 eV Core-core repulsion = 23957.609689 eV Total energy + Delta-G solvation = -3622.141239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42695 -38.90889 -38.34351 -36.47024 -33.41527 -33.19615 -31.74880 -30.43915 -29.40878 -27.86477 -25.48496 -25.46346 -24.99760 -24.20811 -21.90255 -21.73929 -20.74363 -19.60372 -18.74845 -18.39822 -16.91151 -16.29612 -15.97936 -15.53838 -15.35279 -15.07336 -14.77071 -14.49209 -14.16029 -13.70129 -13.42005 -13.19238 -13.10598 -12.86815 -12.59258 -12.47681 -12.33685 -12.31444 -12.03303 -11.90186 -11.80753 -11.00132 -10.95521 -10.85591 -10.57892 -10.46608 -10.41108 -10.32073 -10.18546 -10.11208 -9.83464 -9.22812 -9.18217 -9.07143 -8.83618 -8.39770 -8.37692 -7.62838 -5.94816 -4.03955 1.69922 2.36176 2.44141 3.33290 3.40856 3.42882 3.64687 3.97362 4.36761 4.46627 4.62736 4.76851 4.81443 4.83876 4.90248 5.10319 5.13734 5.17416 5.34507 5.35541 5.41152 5.53452 5.57595 5.71513 5.74810 5.81916 5.88100 5.99448 6.01290 6.02555 6.11466 6.22764 6.33606 6.35123 6.54830 6.64525 6.67940 6.73725 6.85716 6.91523 7.02620 7.22643 7.39240 7.68379 7.72500 7.93759 8.06182 8.37177 8.44380 8.98424 9.05568 9.61461 11.10185 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014796 B = 0.004046 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.897890 B = 6918.140013 C = 8055.508542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.370 5.370 3 C 0.085 3.915 4 C -0.265 4.265 5 C 0.582 3.418 6 O -0.533 6.533 7 N -0.602 5.602 8 C 0.105 3.895 9 C -0.132 4.132 10 C -0.110 4.110 11 C 0.040 3.960 12 H 0.029 0.971 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.878 5.878 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.114 3.886 22 C 0.139 3.861 23 C -0.040 4.040 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.127 4.127 27 N -0.300 5.300 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.181 0.819 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.263 0.737 39 H 0.124 0.876 40 H 0.040 0.960 41 H 0.123 0.877 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.317 -8.481 0.284 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.149 5.149 3 C -0.065 4.065 4 C -0.280 4.280 5 C 0.369 3.631 6 O -0.411 6.411 7 N -0.335 5.335 8 C -0.019 4.019 9 C -0.171 4.171 10 C -0.148 4.148 11 C 0.021 3.979 12 H 0.047 0.953 13 C -0.560 4.560 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.516 5.516 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.006 4.006 22 C -0.028 4.028 23 C -0.060 4.060 24 C -0.164 4.164 25 C -0.177 4.177 26 C -0.165 4.165 27 N -0.121 5.121 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.198 0.802 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.142 0.858 40 H 0.059 0.941 41 H 0.141 0.859 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.656 -9.697 -0.222 20.145 hybrid contribution 0.981 1.686 0.021 1.951 sum -16.675 -8.011 -0.201 18.500 Atomic orbital electron populations 1.21886 0.74056 1.04590 1.03467 1.48207 1.06680 1.03844 1.56166 1.23038 0.90341 0.93474 0.99601 1.20507 0.93310 0.94145 1.20030 1.17309 0.85596 0.80140 0.80086 1.90770 1.36626 1.70977 1.42691 1.48362 1.22070 1.24009 1.39033 1.21863 0.89772 0.99903 0.90346 1.22004 0.98937 1.00721 0.95406 1.21625 0.96173 0.96516 1.00450 1.18958 0.91578 0.97112 0.90234 0.95291 1.21075 1.02556 1.04497 1.27919 0.92461 1.25044 0.98120 0.95401 0.95387 1.69889 1.28604 1.24732 1.28338 0.86621 0.82199 0.81989 0.77349 1.20722 1.21199 1.19965 1.22264 0.86054 0.89850 1.02406 1.22122 0.92812 0.92097 0.95789 1.21254 0.94342 0.92344 0.98064 1.22908 1.01152 0.94840 0.97528 1.22800 1.00566 0.97625 0.96745 1.22923 1.01791 0.95657 0.96176 1.77011 1.01298 1.07097 1.26740 0.90669 0.89167 0.89339 0.80229 0.92396 0.90896 0.92164 0.92529 0.93137 0.93279 0.92664 0.85849 0.94131 0.85879 0.89721 0.91252 0.89882 0.91494 0.91034 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 11.44 59.85 0.68 1.36 16 2 N -0.37 -4.45 3.98 -67.60 -0.27 -4.72 16 3 C 0.08 1.10 9.11 -16.57 -0.15 0.95 16 4 C -0.26 -4.54 5.21 -105.07 -0.55 -5.09 16 5 C 0.58 12.26 7.42 -12.52 -0.09 12.17 16 6 O -0.53 -13.41 15.20 5.28 0.08 -13.33 16 7 N -0.60 -12.27 2.97 -173.77 -0.52 -12.78 16 8 C 0.11 1.65 5.53 -3.49 -0.02 1.63 16 9 C -0.13 -2.18 6.10 -26.39 -0.16 -2.34 16 10 C -0.11 -2.20 5.10 -26.69 -0.14 -2.33 16 11 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 12 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 13 C -0.52 -14.17 8.56 -34.44 -0.29 -14.47 16 14 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 16 N -0.88 -25.70 11.39 55.43 0.63 -25.07 16 17 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.11 2.78 5.41 -3.71 -0.02 2.76 16 22 C 0.14 2.28 6.32 -82.02 -0.52 1.76 16 23 C -0.04 -0.62 4.07 -90.96 -0.37 -0.99 16 24 C -0.13 -1.65 7.62 -25.92 -0.20 -1.84 16 25 C -0.14 -1.62 8.08 -25.92 -0.21 -1.83 16 26 C -0.13 -1.70 7.63 -25.93 -0.20 -1.89 16 27 N -0.30 -4.45 12.09 33.90 0.41 -4.04 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.18 1.77 7.36 -52.48 -0.39 1.38 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.00 4.79 -51.93 -0.25 0.75 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.12 3.51 5.11 -51.93 -0.27 3.25 16 40 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.12 2.26 6.79 -51.93 -0.35 1.91 16 42 H 0.08 1.09 7.77 -51.93 -0.40 0.69 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -33.37 371.59 -9.15 -42.52 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.54 Total: 3.24 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -2.53 Total: -7.70 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.26 Total: -46.61 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.37 -9.15 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.842 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds