Wall clock time and date at job start Tue Mar 31 2020 11:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34252 * 125.75893 * 2 1 4 4 C 1.38041 * 107.42074 * 179.97438 * 3 2 1 5 5 C 1.47429 * 126.41965 * 179.97438 * 4 3 2 6 6 O 1.21602 * 120.00517 * 220.90539 * 5 4 3 7 7 N 1.34783 * 119.99741 * 41.17609 * 5 4 3 8 8 C 1.46930 * 120.62883 * 4.96838 * 7 5 4 9 9 C 1.53622 * 108.53943 * 126.36629 * 8 7 5 10 10 C 1.53041 * 109.24358 * 54.85838 * 9 8 7 11 11 C 1.53042 * 109.53777 * 298.50686 * 10 9 8 12 12 H 1.08998 * 109.49536 * 301.41808 * 11 10 9 13 13 C 1.50694 * 109.50198 * 181.31509 * 11 10 9 14 14 H 1.08005 * 119.99722 * 0.16605 * 13 11 10 15 15 C 1.37880 * 120.00376 * 180.16034 * 13 11 10 16 16 N 1.31512 * 119.99933 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99943 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47034 * 90.00588 * 17 15 13 19 19 H 1.48503 * 109.46799 * 210.00252 * 17 15 13 20 20 H 1.48501 * 109.47244 * 330.00185 * 17 15 13 21 21 C 1.46918 * 120.62938 * 185.24544 * 7 5 4 22 22 C 1.41295 * 107.16998 * 0.21829 * 4 3 2 23 23 C 1.50700 * 125.99040 * 179.77234 * 22 4 3 24 24 C 1.53779 * 113.61337 * 217.50034 * 23 22 4 25 25 C 1.53784 * 87.07884 * 220.02116 * 24 23 22 26 26 C 1.53772 * 87.08099 * 25.43313 * 25 24 23 27 27 N 1.30451 * 108.01828 * 359.62229 * 22 4 3 28 28 H 1.08999 * 109.47144 * 90.00278 * 1 2 3 29 29 H 1.08997 * 109.47251 * 210.00926 * 1 2 3 30 30 H 1.09003 * 109.46953 * 330.00713 * 1 2 3 31 31 H 1.08007 * 126.29119 * 359.97051 * 3 2 1 32 32 H 1.08997 * 109.58354 * 246.19816 * 8 7 5 33 33 H 1.08997 * 109.58856 * 6.62708 * 8 7 5 34 34 H 1.08995 * 109.63849 * 294.86085 * 9 8 7 35 35 H 1.09002 * 109.45985 * 174.73879 * 9 8 7 36 36 H 1.08999 * 109.46207 * 178.49106 * 10 9 8 37 37 H 1.09004 * 109.45161 * 58.51711 * 10 9 8 38 38 H 0.96991 * 120.00443 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.59072 * 353.37648 * 21 7 5 40 40 H 1.09006 * 109.58821 * 113.79921 * 21 7 5 41 41 H 1.08999 * 112.85031 * 348.81113 * 23 22 4 42 42 H 1.08994 * 113.61761 * 334.56637 * 24 23 22 43 43 H 1.08998 * 113.61230 * 105.47393 * 24 23 22 44 44 H 1.09005 * 113.61255 * 270.88479 * 25 24 23 45 45 H 1.08999 * 113.61345 * 139.98445 * 25 24 23 46 46 H 1.08998 * 113.61656 * 220.01783 * 26 25 24 47 47 H 1.09003 * 113.69405 * 89.13248 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.0894 0.0000 4 6 3.5599 0.6551 0.0006 5 6 4.7639 1.5058 0.0003 6 8 5.7200 1.2062 -0.6889 7 7 4.8071 2.6128 0.7680 8 6 3.7082 2.9267 1.6914 9 6 4.2951 3.1379 3.0953 10 6 5.3861 4.2092 3.0300 11 6 6.5103 3.7390 2.1042 12 1 6.9182 2.7990 2.4756 13 6 7.5990 4.7803 2.0657 14 1 7.5007 5.6859 2.6459 15 6 8.7206 4.5768 1.2901 16 7 8.8402 3.4742 0.5833 17 14 10.0704 5.8672 1.2431 18 1 11.0624 5.5850 2.3115 19 1 10.7439 5.8310 -0.0799 20 1 9.4778 7.2115 1.4602 21 6 5.9512 3.5315 0.6931 22 6 3.5311 -0.7575 -0.0042 23 6 4.7321 -1.6678 -0.0102 24 6 4.5457 -2.9278 -0.8719 25 6 5.2793 -3.6995 0.2378 26 6 4.8003 -2.6056 1.2066 27 7 2.2826 -1.1357 0.0008 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5140 30 1 -0.3633 0.8901 0.5137 31 1 1.9167 2.1169 -0.0004 32 1 3.2032 3.8351 1.3630 33 1 2.9995 2.0988 1.7109 34 1 4.7239 2.2036 3.4575 35 1 3.5062 3.4631 3.7735 36 1 5.7865 4.3811 4.0291 37 1 4.9619 5.1363 2.6442 38 1 9.6290 3.3311 0.0374 39 1 6.7228 3.1029 0.0536 40 1 5.6254 4.4883 0.2848 41 1 5.6641 -1.1375 -0.2056 42 1 3.5037 -3.2233 -0.9936 43 1 5.0908 -2.8961 -1.8153 44 1 6.3614 -3.7257 0.1093 45 1 4.8524 -4.6813 0.4423 46 1 5.5508 -2.3137 1.9412 47 1 3.8280 -2.8118 1.6541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:51 Heat of formation + Delta-G solvation = 36.606537 kcal Electronic energy + Delta-G solvation = -27580.649279 eV Core-core repulsion = 23957.609689 eV Total energy + Delta-G solvation = -3623.039590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.55942 -40.49367 -39.41770 -38.16363 -35.28937 -34.18297 -33.46369 -31.89294 -30.94104 -28.75962 -27.11473 -26.65607 -26.53867 -25.47660 -23.47965 -23.04028 -21.91204 -21.11179 -20.03350 -19.69833 -18.56883 -17.88739 -17.42246 -16.64300 -16.62310 -16.42635 -16.26004 -15.90318 -15.64827 -15.19236 -14.83912 -14.60230 -14.24554 -14.19558 -13.96055 -13.70982 -13.66094 -13.42558 -13.37622 -13.24097 -12.92231 -12.87218 -12.64873 -12.24959 -12.22019 -12.08173 -11.81266 -11.65010 -11.60077 -11.40627 -11.24909 -11.04834 -10.91994 -10.63914 -10.49448 -10.20575 -9.61251 -9.27276 -8.07767 -6.25796 0.62677 1.15562 1.41549 1.42386 1.49319 1.53330 2.12677 2.41726 2.49387 3.19943 3.35311 3.58708 3.77528 3.80706 3.90067 4.00781 4.05670 4.12189 4.19224 4.25902 4.40491 4.48150 4.54518 4.60959 4.63021 4.75676 4.76098 4.76876 4.81794 4.82843 4.88434 4.92212 5.02523 5.04392 5.10817 5.26091 5.28151 5.29769 5.36468 5.43753 5.56294 5.58863 5.70718 5.93045 5.97146 6.04273 6.35954 6.57588 6.77721 6.87792 7.42509 7.46360 8.95343 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014796 B = 0.004046 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.897890 B = 6918.140013 C = 8055.508542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.355 5.355 3 C 0.115 3.885 4 C -0.309 4.309 5 C 0.577 3.423 6 O -0.594 6.594 7 N -0.605 5.605 8 C 0.102 3.898 9 C -0.126 4.126 10 C -0.104 4.104 11 C 0.038 3.962 12 H -0.020 1.020 13 C -0.536 4.536 14 H 0.063 0.937 15 C 0.010 3.990 16 N -0.915 5.915 17 Si 0.957 3.043 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.260 1.260 21 C 0.128 3.872 22 C 0.124 3.876 23 C -0.058 4.058 24 C -0.118 4.118 25 C -0.127 4.127 26 C -0.121 4.121 27 N -0.308 5.308 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.221 0.779 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.040 0.960 35 H 0.104 0.896 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.259 0.741 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.060 0.940 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.306 -7.707 1.368 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.133 5.133 3 C -0.037 4.037 4 C -0.324 4.324 5 C 0.367 3.633 6 O -0.475 6.475 7 N -0.336 5.336 8 C -0.020 4.020 9 C -0.164 4.164 10 C -0.141 4.141 11 C 0.019 3.981 12 H -0.002 1.002 13 C -0.574 4.574 14 H 0.081 0.919 15 C -0.190 4.190 16 N -0.553 5.553 17 Si 0.783 3.217 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.184 1.184 21 C 0.005 3.995 22 C -0.042 4.042 23 C -0.078 4.078 24 C -0.156 4.156 25 C -0.164 4.164 26 C -0.160 4.160 27 N -0.130 5.130 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.144 0.856 31 H 0.237 0.763 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.059 0.941 35 H 0.123 0.877 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.111 0.889 46 H 0.079 0.921 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.717 -8.929 0.902 23.498 hybrid contribution 2.112 1.451 -0.307 2.581 sum -19.605 -7.477 0.595 20.991 Atomic orbital electron populations 1.22438 0.70409 1.06936 1.05324 1.48686 1.08464 1.02749 1.53439 1.23430 0.88624 0.95188 0.96490 1.20225 0.93395 0.94041 1.24697 1.17934 0.86261 0.80146 0.79002 1.90726 1.39291 1.72336 1.45167 1.48355 1.22154 1.23294 1.39824 1.22228 0.88628 1.02439 0.88682 1.21976 0.98939 0.98568 0.96947 1.21506 0.95567 0.98136 0.98907 1.18895 0.93100 0.94444 0.91648 1.00178 1.21522 1.03433 1.05032 1.27460 0.91870 1.25906 1.00711 0.97289 0.95061 1.70110 1.29011 1.26934 1.29290 0.85567 0.79192 0.79876 0.77105 1.20234 1.21420 1.18395 1.21677 0.86681 0.90095 1.01017 1.22149 0.93520 0.92030 0.96472 1.21196 0.92964 0.93201 1.00462 1.22865 1.01670 0.93544 0.97482 1.22761 1.00568 0.98131 0.94956 1.22896 1.01944 0.95655 0.95480 1.76960 1.00607 1.08424 1.27012 0.88999 0.88295 0.85645 0.76250 0.89084 0.88158 0.94120 0.87740 0.93202 0.91930 0.93219 0.90701 0.94099 0.90097 0.89001 0.91605 0.89914 0.88949 0.92118 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.44 127.77 1.46 2.17 16 2 N -0.36 -7.23 3.98 -367.78 -1.46 -8.69 16 3 C 0.11 2.60 9.11 84.28 0.77 3.37 16 4 C -0.31 -10.54 5.21 -20.15 -0.10 -10.64 16 5 C 0.58 25.54 7.42 86.66 0.64 26.18 16 6 O -0.59 -32.70 15.20 -4.04 -0.06 -32.76 16 7 N -0.61 -25.12 2.97 -821.94 -2.44 -27.56 16 8 C 0.10 2.92 5.53 86.51 0.48 3.40 16 9 C -0.13 -3.85 6.10 30.82 0.19 -3.66 16 10 C -0.10 -4.03 5.10 30.62 0.16 -3.88 16 11 C 0.04 1.98 2.25 -11.46 -0.03 1.96 16 12 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 13 C -0.54 -29.96 8.56 25.60 0.22 -29.74 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.01 0.56 5.30 84.66 0.45 1.01 16 16 N -0.91 -57.00 11.39 21.45 0.24 -56.75 16 17 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 21 C 0.13 6.51 5.41 86.37 0.47 6.98 16 22 C 0.12 4.13 6.32 43.52 0.28 4.41 16 23 C -0.06 -1.92 4.07 -11.02 -0.04 -1.97 16 24 C -0.12 -3.13 7.62 31.12 0.24 -2.89 16 25 C -0.13 -2.92 8.08 31.12 0.25 -2.67 16 26 C -0.12 -3.33 7.63 31.12 0.24 -3.10 16 27 N -0.31 -8.58 12.09 -46.67 -0.56 -9.15 16 28 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.22 3.09 7.36 -2.91 -0.02 3.06 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.10 2.35 4.79 -2.39 -0.01 2.34 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.07 4.61 5.11 -2.39 -0.01 4.60 16 40 H 0.04 2.02 8.14 -2.38 -0.02 2.01 16 41 H 0.08 3.36 6.79 -2.39 -0.02 3.35 16 42 H 0.09 2.30 7.77 -2.39 -0.02 2.29 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.09 2.29 8.09 -2.39 -0.02 2.27 16 Total: -1.00 -81.93 371.59 4.36 -77.57 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.96 Total: 19.53 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 5.66 Total: -9.07 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -4.22 Total: -102.15 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.06 Total: -32.76 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -81.93 4.36 -77.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.179 kcal (2) G-P(sol) polarization free energy of solvation -81.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds