Wall clock time and date at job start Tue Mar 31 2020 11:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34254 * 125.75535 * 2 1 4 4 C 1.38045 * 107.41638 * 179.97438 * 3 2 1 5 5 C 1.47430 * 126.41037 * 179.97438 * 4 3 2 6 6 O 1.21602 * 119.99642 * 139.62327 * 5 4 3 7 7 N 1.34775 * 120.00145 * 319.61702 * 5 4 3 8 8 C 1.46931 * 120.63119 * 354.49102 * 7 5 4 9 9 C 1.53190 * 108.77513 * 233.61225 * 8 7 5 10 10 C 1.53045 * 109.31450 * 305.36288 * 9 8 7 11 11 C 1.53043 * 109.53669 * 61.36753 * 10 9 8 12 12 H 1.08999 * 109.49728 * 58.61448 * 11 10 9 13 13 C 1.50700 * 109.49752 * 178.68753 * 11 10 9 14 14 H 1.07998 * 119.99753 * 359.93182 * 13 11 10 15 15 C 1.37875 * 119.99572 * 179.66299 * 13 11 10 16 16 N 1.31510 * 120.00305 * 0.26735 * 15 13 11 17 17 Si 1.86806 * 119.99759 * 180.27384 * 15 13 11 18 18 H 1.48498 * 109.47012 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47165 * 119.99545 * 17 15 13 20 20 H 1.48503 * 109.46843 * 239.99766 * 17 15 13 21 21 C 1.46937 * 120.60234 * 174.51847 * 7 5 4 22 22 C 1.41283 * 107.17106 * 0.22597 * 4 3 2 23 23 C 1.50702 * 125.98953 * 179.74178 * 22 4 3 24 24 C 1.53787 * 113.61337 * 219.13727 * 23 22 4 25 25 C 1.53956 * 87.01910 * 220.04476 * 24 23 22 26 26 C 1.53777 * 113.61815 * 121.52787 * 23 22 4 27 27 N 1.30448 * 108.02261 * 359.61779 * 22 4 3 28 28 H 1.08996 * 109.47711 * 89.99903 * 1 2 3 29 29 H 1.09000 * 109.47341 * 210.00438 * 1 2 3 30 30 H 1.09003 * 109.46777 * 329.99698 * 1 2 3 31 31 H 1.08003 * 126.29052 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.58604 * 113.82449 * 8 7 5 33 33 H 1.09000 * 109.58213 * 353.39812 * 8 7 5 34 34 H 1.08999 * 109.49740 * 185.41571 * 9 8 7 35 35 H 1.08996 * 109.50099 * 65.31576 * 9 8 7 36 36 H 1.09007 * 109.46026 * 301.34994 * 10 9 8 37 37 H 1.08989 * 109.46109 * 181.38797 * 10 9 8 38 38 H 0.97002 * 120.00117 * 179.97438 * 16 15 13 39 39 H 1.08993 * 109.62067 * 6.61521 * 21 7 5 40 40 H 1.09007 * 109.55677 * 246.18825 * 21 7 5 41 41 H 1.09002 * 112.84828 * 350.32635 * 23 22 4 42 42 H 1.08994 * 113.61405 * 334.56275 * 24 23 22 43 43 H 1.09001 * 113.61250 * 105.46559 * 24 23 22 44 44 H 1.09000 * 113.53826 * 270.81670 * 25 24 23 45 45 H 1.08991 * 113.66532 * 139.93147 * 25 24 23 46 46 H 1.08996 * 113.61231 * 254.53199 * 26 23 22 47 47 H 1.09000 * 113.61414 * 25.43052 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6552 0.0006 5 6 4.7638 1.5061 0.0003 6 8 5.7232 1.2022 0.6829 7 7 4.8012 2.6205 -0.7567 8 6 3.7008 2.9374 -1.6773 9 6 4.2795 3.1665 -3.0771 10 6 5.3679 4.2400 -3.0054 11 6 6.4967 3.7639 -2.0881 12 1 6.9061 2.8288 -2.4702 13 6 7.5827 4.8077 -2.0436 14 1 7.4792 5.7193 -2.6135 15 6 8.7059 4.6014 -1.2710 16 7 8.8318 3.4914 -0.5770 17 14 10.0487 5.8986 -1.2098 18 1 9.6688 7.0453 -2.0735 19 1 10.2207 6.3674 0.1887 20 1 11.3241 5.3141 -1.6964 21 6 5.9437 3.5410 -0.6769 22 6 3.5310 -0.7574 -0.0044 23 6 4.7321 -1.6676 -0.0111 24 6 4.5603 -2.9075 -0.9045 25 6 5.2756 -3.7043 0.2018 26 6 4.7816 -2.6312 1.1863 27 7 2.2826 -1.1356 0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.9166 2.1169 0.0004 32 1 3.1911 3.8401 -1.3405 33 1 2.9964 2.1061 -1.7047 34 1 3.4871 3.4962 -3.7489 35 1 4.7095 2.2367 -3.4496 36 1 4.9428 5.1623 -2.6095 37 1 5.7643 4.4225 -4.0042 38 1 9.6222 3.3461 -0.0337 39 1 6.7190 3.1082 -0.0448 40 1 5.6169 4.4928 -0.2580 41 1 5.6670 -1.1335 -0.1807 42 1 3.5205 -3.1999 -1.0503 43 1 5.1210 -2.8544 -1.8377 44 1 6.3596 -3.7280 0.0896 45 1 4.8457 -4.6901 0.3786 46 1 5.5206 -2.3553 1.9385 47 1 3.8023 -2.8479 1.6131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:56 Heat of formation + Delta-G solvation = 57.453167 kcal Electronic energy + Delta-G solvation = -27558.421265 eV Core-core repulsion = 23936.285652 eV Total energy + Delta-G solvation = -3622.135613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.42809 -38.91332 -38.32944 -36.47548 -33.41930 -33.19646 -31.75415 -30.44499 -29.41796 -27.86732 -25.48092 -25.45879 -24.99959 -24.21271 -21.90779 -21.73514 -20.74275 -19.60751 -18.74834 -18.39712 -16.91357 -16.29558 -15.97451 -15.57015 -15.31941 -15.06750 -14.76796 -14.49111 -14.16122 -13.71143 -13.42463 -13.20347 -13.08597 -12.86421 -12.59797 -12.49545 -12.33107 -12.30873 -12.02419 -11.90973 -11.81334 -11.00544 -10.97015 -10.84284 -10.57658 -10.45696 -10.39311 -10.32835 -10.19172 -10.10216 -9.83660 -9.23037 -9.17666 -9.07511 -8.83101 -8.40148 -8.38267 -7.62770 -5.95112 -4.04155 1.69815 2.36370 2.43847 3.32404 3.40929 3.43763 3.65076 3.97343 4.36552 4.46485 4.62838 4.76745 4.81675 4.84012 4.90405 5.12264 5.12853 5.16495 5.34286 5.35756 5.40883 5.53704 5.57325 5.71736 5.75030 5.82022 5.88661 5.98245 6.01161 6.02092 6.13863 6.22723 6.33686 6.35155 6.54852 6.64289 6.66960 6.73587 6.85566 6.91516 7.02425 7.22631 7.39166 7.68405 7.72426 7.93616 8.06031 8.37248 8.44224 8.98543 9.05766 9.61344 11.09888 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.004044 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.919591 B = 6922.547110 C = 8130.478257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.370 5.370 3 C 0.085 3.915 4 C -0.265 4.265 5 C 0.581 3.419 6 O -0.532 6.532 7 N -0.603 5.603 8 C 0.105 3.895 9 C -0.133 4.133 10 C -0.110 4.110 11 C 0.040 3.960 12 H 0.029 0.971 13 C -0.521 4.521 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.878 5.878 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.114 3.886 22 C 0.138 3.862 23 C -0.036 4.036 24 C -0.129 4.129 25 C -0.140 4.140 26 C -0.123 4.123 27 N -0.300 5.300 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.181 0.819 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.263 0.737 39 H 0.124 0.876 40 H 0.040 0.960 41 H 0.118 0.882 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.326 -8.528 0.090 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.149 5.149 3 C -0.065 4.065 4 C -0.280 4.280 5 C 0.368 3.632 6 O -0.409 6.409 7 N -0.335 5.335 8 C -0.019 4.019 9 C -0.171 4.171 10 C -0.147 4.147 11 C 0.020 3.980 12 H 0.047 0.953 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.516 5.516 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.006 4.006 22 C -0.029 4.029 23 C -0.056 4.056 24 C -0.168 4.168 25 C -0.178 4.178 26 C -0.161 4.161 27 N -0.121 5.121 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.198 0.802 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.142 0.858 40 H 0.059 0.941 41 H 0.136 0.864 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.664 -9.745 0.592 20.183 hybrid contribution 0.984 1.691 -0.025 1.956 sum -16.680 -8.055 0.567 18.532 Atomic orbital electron populations 1.21886 0.74057 1.04557 1.03506 1.48210 1.06683 1.03842 1.56146 1.23046 0.90349 0.93471 0.99593 1.20519 0.93312 0.94126 1.20020 1.17311 0.85642 0.80172 0.80096 1.90781 1.36358 1.71055 1.42721 1.48364 1.22123 1.23451 1.39590 1.21775 0.89759 0.99889 0.90429 1.21935 0.99001 1.00702 0.95490 1.21622 0.96178 0.96490 1.00452 1.18969 0.91584 0.97098 0.90305 0.95283 1.21114 1.02521 1.04003 1.28317 0.92401 1.25047 0.98128 0.95401 0.95404 1.69902 1.28454 1.24340 1.28878 0.86569 0.82024 0.81837 0.77765 1.19844 1.21001 1.21031 1.22265 0.86142 0.89851 1.02310 1.22122 0.92823 0.92098 0.95819 1.21169 0.94012 0.92227 0.98175 1.22989 1.01278 0.95109 0.97374 1.22837 1.00568 0.97671 0.96703 1.22869 1.01751 0.95243 0.96255 1.77008 1.01286 1.07098 1.26757 0.90539 0.89225 0.89402 0.80221 0.92424 0.90905 0.92482 0.92185 0.93276 0.93129 0.92722 0.85836 0.94136 0.86383 0.89679 0.91290 0.89911 0.91499 0.90890 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 11.44 59.85 0.68 1.35 16 2 N -0.37 -4.44 3.98 -67.60 -0.27 -4.71 16 3 C 0.08 1.10 9.10 -16.56 -0.15 0.95 16 4 C -0.26 -4.54 5.22 -105.07 -0.55 -5.09 16 5 C 0.58 12.24 7.34 -12.52 -0.09 12.15 16 6 O -0.53 -13.38 15.50 5.28 0.08 -13.29 16 7 N -0.60 -12.28 2.97 -174.02 -0.52 -12.80 16 8 C 0.11 1.66 5.47 -3.71 -0.02 1.64 16 9 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 10 C -0.11 -2.19 5.11 -26.69 -0.14 -2.33 16 11 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 12 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 13 C -0.52 -14.15 8.57 -34.44 -0.30 -14.44 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.88 -25.71 11.38 55.43 0.63 -25.08 16 17 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.11 2.78 5.41 -3.70 -0.02 2.76 16 22 C 0.14 2.27 6.31 -82.02 -0.52 1.76 16 23 C -0.04 -0.56 3.96 -90.96 -0.36 -0.92 16 24 C -0.13 -1.67 7.63 -25.82 -0.20 -1.87 16 25 C -0.14 -1.62 8.09 -25.82 -0.21 -1.83 16 26 C -0.12 -1.66 7.63 -25.92 -0.20 -1.86 16 27 N -0.30 -4.44 12.13 33.89 0.41 -4.03 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.18 1.77 7.33 -52.48 -0.38 1.39 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.00 4.80 -51.93 -0.25 0.75 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 1.00 8.14 -51.94 -0.42 0.57 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.12 3.52 5.10 -51.93 -0.27 3.25 16 40 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.12 2.15 7.14 -51.93 -0.37 1.78 16 42 H 0.08 1.08 7.80 -51.93 -0.40 0.68 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 LS Contribution 372.04 15.07 5.61 5.61 Total: -1.00 -33.41 372.04 -9.15 -42.56 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.55 Total: 3.11 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.52 Total: -7.64 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.26 Total: -46.62 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.41 -9.15 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.015 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds