Wall clock time and date at job start Tue Mar 31 2020 11:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34254 * 125.75535 * 2 1 4 4 C 1.38045 * 107.41638 * 179.97438 * 3 2 1 5 5 C 1.47430 * 126.41037 * 179.97438 * 4 3 2 6 6 O 1.21602 * 119.99642 * 139.62327 * 5 4 3 7 7 N 1.34775 * 120.00145 * 319.61702 * 5 4 3 8 8 C 1.46931 * 120.63119 * 354.49102 * 7 5 4 9 9 C 1.53190 * 108.77513 * 233.61225 * 8 7 5 10 10 C 1.53045 * 109.31450 * 305.36288 * 9 8 7 11 11 C 1.53043 * 109.53669 * 61.36753 * 10 9 8 12 12 H 1.08999 * 109.49728 * 58.61448 * 11 10 9 13 13 C 1.50700 * 109.49752 * 178.68753 * 11 10 9 14 14 H 1.07998 * 119.99753 * 359.93182 * 13 11 10 15 15 C 1.37875 * 119.99572 * 179.66299 * 13 11 10 16 16 N 1.31510 * 120.00305 * 0.26735 * 15 13 11 17 17 Si 1.86806 * 119.99759 * 180.27384 * 15 13 11 18 18 H 1.48498 * 109.47012 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47165 * 119.99545 * 17 15 13 20 20 H 1.48503 * 109.46843 * 239.99766 * 17 15 13 21 21 C 1.46937 * 120.60234 * 174.51847 * 7 5 4 22 22 C 1.41283 * 107.17106 * 0.22597 * 4 3 2 23 23 C 1.50702 * 125.98953 * 179.74178 * 22 4 3 24 24 C 1.53787 * 113.61337 * 219.13727 * 23 22 4 25 25 C 1.53956 * 87.01910 * 220.04476 * 24 23 22 26 26 C 1.53777 * 113.61815 * 121.52787 * 23 22 4 27 27 N 1.30448 * 108.02261 * 359.61779 * 22 4 3 28 28 H 1.08996 * 109.47711 * 89.99903 * 1 2 3 29 29 H 1.09000 * 109.47341 * 210.00438 * 1 2 3 30 30 H 1.09003 * 109.46777 * 329.99698 * 1 2 3 31 31 H 1.08003 * 126.29052 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.58604 * 113.82449 * 8 7 5 33 33 H 1.09000 * 109.58213 * 353.39812 * 8 7 5 34 34 H 1.08999 * 109.49740 * 185.41571 * 9 8 7 35 35 H 1.08996 * 109.50099 * 65.31576 * 9 8 7 36 36 H 1.09007 * 109.46026 * 301.34994 * 10 9 8 37 37 H 1.08989 * 109.46109 * 181.38797 * 10 9 8 38 38 H 0.97002 * 120.00117 * 179.97438 * 16 15 13 39 39 H 1.08993 * 109.62067 * 6.61521 * 21 7 5 40 40 H 1.09007 * 109.55677 * 246.18825 * 21 7 5 41 41 H 1.09002 * 112.84828 * 350.32635 * 23 22 4 42 42 H 1.08994 * 113.61405 * 334.56275 * 24 23 22 43 43 H 1.09001 * 113.61250 * 105.46559 * 24 23 22 44 44 H 1.09000 * 113.53826 * 270.81670 * 25 24 23 45 45 H 1.08991 * 113.66532 * 139.93147 * 25 24 23 46 46 H 1.08996 * 113.61231 * 254.53199 * 26 23 22 47 47 H 1.09000 * 113.61414 * 25.43052 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6552 0.0006 5 6 4.7638 1.5061 0.0003 6 8 5.7232 1.2022 0.6829 7 7 4.8012 2.6205 -0.7567 8 6 3.7008 2.9374 -1.6773 9 6 4.2795 3.1665 -3.0771 10 6 5.3679 4.2400 -3.0054 11 6 6.4967 3.7639 -2.0881 12 1 6.9061 2.8288 -2.4702 13 6 7.5827 4.8077 -2.0436 14 1 7.4792 5.7193 -2.6135 15 6 8.7059 4.6014 -1.2710 16 7 8.8318 3.4914 -0.5770 17 14 10.0487 5.8986 -1.2098 18 1 9.6688 7.0453 -2.0735 19 1 10.2207 6.3674 0.1887 20 1 11.3241 5.3141 -1.6964 21 6 5.9437 3.5410 -0.6769 22 6 3.5310 -0.7574 -0.0044 23 6 4.7321 -1.6676 -0.0111 24 6 4.5603 -2.9075 -0.9045 25 6 5.2756 -3.7043 0.2018 26 6 4.7816 -2.6312 1.1863 27 7 2.2826 -1.1356 0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.9166 2.1169 0.0004 32 1 3.1911 3.8401 -1.3405 33 1 2.9964 2.1061 -1.7047 34 1 3.4871 3.4962 -3.7489 35 1 4.7095 2.2367 -3.4496 36 1 4.9428 5.1623 -2.6095 37 1 5.7643 4.4225 -4.0042 38 1 9.6222 3.3461 -0.0337 39 1 6.7190 3.1082 -0.0448 40 1 5.6169 4.4928 -0.2580 41 1 5.6670 -1.1335 -0.1807 42 1 3.5205 -3.1999 -1.0503 43 1 5.1210 -2.8544 -1.8377 44 1 6.3596 -3.7280 0.0896 45 1 4.8457 -4.6901 0.3786 46 1 5.5206 -2.3553 1.9385 47 1 3.8023 -2.8479 1.6131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:56 Heat of formation + Delta-G solvation = 36.684002 kcal Electronic energy + Delta-G solvation = -27559.321883 eV Core-core repulsion = 23936.285652 eV Total energy + Delta-G solvation = -3623.036231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.56118 -40.49886 -39.40467 -38.16943 -35.29556 -34.18374 -33.46785 -31.90698 -30.94769 -28.76261 -27.11585 -26.65805 -26.53475 -25.48185 -23.48005 -23.04521 -21.91116 -21.11566 -20.03698 -19.69577 -18.57364 -17.89258 -17.41403 -16.68903 -16.62161 -16.38940 -16.23537 -15.90468 -15.65759 -15.20488 -14.84027 -14.60566 -14.24754 -14.19189 -13.97973 -13.72514 -13.64051 -13.43407 -13.37398 -13.25240 -12.90788 -12.89602 -12.63949 -12.26395 -12.20612 -12.08455 -11.80121 -11.65002 -11.60078 -11.40816 -11.22985 -11.05392 -10.92499 -10.64310 -10.50488 -10.20499 -9.61677 -9.27320 -8.08151 -6.26077 0.62555 1.15482 1.40660 1.41995 1.49121 1.54210 2.12942 2.41521 2.49178 3.19675 3.35179 3.58547 3.77859 3.80243 3.89703 4.01730 4.04717 4.11665 4.19331 4.25563 4.40621 4.49170 4.53143 4.60734 4.62701 4.75709 4.76155 4.77065 4.82145 4.82680 4.87750 4.91622 5.03597 5.04604 5.10552 5.26139 5.27859 5.29529 5.36252 5.43669 5.55793 5.58630 5.70486 5.92769 5.96938 6.04091 6.35707 6.57426 6.77643 6.87715 7.42424 7.46291 8.95148 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.004044 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.919591 B = 6922.547110 C = 8130.478257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.355 5.355 3 C 0.115 3.885 4 C -0.308 4.308 5 C 0.576 3.424 6 O -0.593 6.593 7 N -0.606 5.606 8 C 0.102 3.898 9 C -0.127 4.127 10 C -0.103 4.103 11 C 0.038 3.962 12 H -0.020 1.020 13 C -0.535 4.535 14 H 0.063 0.937 15 C 0.009 3.991 16 N -0.915 5.915 17 Si 0.957 3.043 18 H -0.259 1.259 19 H -0.282 1.282 20 H -0.284 1.284 21 C 0.128 3.872 22 C 0.124 3.876 23 C -0.053 4.053 24 C -0.119 4.119 25 C -0.127 4.127 26 C -0.120 4.120 27 N -0.308 5.308 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.221 0.779 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.259 0.741 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.319 -7.776 -0.910 22.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.133 5.133 3 C -0.037 4.037 4 C -0.324 4.324 5 C 0.366 3.634 6 O -0.474 6.474 7 N -0.337 5.337 8 C -0.020 4.020 9 C -0.165 4.165 10 C -0.141 4.141 11 C 0.018 3.982 12 H -0.002 1.002 13 C -0.573 4.573 14 H 0.081 0.919 15 C -0.190 4.190 16 N -0.554 5.554 17 Si 0.783 3.217 18 H -0.183 1.183 19 H -0.208 1.208 20 H -0.210 1.210 21 C 0.005 3.995 22 C -0.042 4.042 23 C -0.073 4.073 24 C -0.157 4.157 25 C -0.164 4.164 26 C -0.158 4.158 27 N -0.130 5.130 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.140 0.860 31 H 0.237 0.763 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.110 0.890 46 H 0.078 0.922 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.729 -8.999 -0.449 23.523 hybrid contribution 2.115 1.464 0.270 2.587 sum -19.613 -7.535 -0.178 21.012 Atomic orbital electron populations 1.22437 0.70406 1.06654 1.05613 1.48690 1.08469 1.02747 1.53411 1.23433 0.88633 0.95179 0.96497 1.20235 0.93396 0.94030 1.24691 1.17935 0.86301 0.80180 0.78995 1.90735 1.39025 1.72419 1.45212 1.48358 1.22204 1.22746 1.40375 1.22137 0.88608 1.02401 0.88814 1.21910 0.99025 0.98565 0.96986 1.21503 0.95544 0.98099 0.98946 1.18907 0.93123 0.94468 0.91668 1.00161 1.21548 1.03395 1.04519 1.27853 0.91868 1.25907 1.00694 0.97306 0.95089 1.70120 1.28885 1.26549 1.29828 0.85514 0.78854 0.79487 0.77858 1.18281 1.20820 1.21014 1.21679 0.86748 0.90089 1.00949 1.22149 0.93534 0.92021 0.96501 1.21115 0.92614 0.93085 1.00523 1.22937 1.01830 0.93637 0.97269 1.22795 1.00610 0.98145 0.94876 1.22851 1.01800 0.95458 0.95699 1.76957 1.00591 1.08414 1.27024 0.88336 0.88543 0.86045 0.76264 0.89094 0.88201 0.87689 0.94143 0.91920 0.93197 0.93220 0.90680 0.94105 0.90581 0.88881 0.91396 0.89922 0.88957 0.92213 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.44 127.77 1.46 2.17 16 2 N -0.36 -7.22 3.98 -367.78 -1.46 -8.68 16 3 C 0.11 2.61 9.10 84.28 0.77 3.37 16 4 C -0.31 -10.54 5.22 -20.15 -0.11 -10.64 16 5 C 0.58 25.53 7.34 86.66 0.64 26.16 16 6 O -0.59 -32.64 15.50 -4.04 -0.06 -32.70 16 7 N -0.61 -25.17 2.97 -822.74 -2.45 -27.61 16 8 C 0.10 2.93 5.47 86.36 0.47 3.41 16 9 C -0.13 -3.87 6.08 30.67 0.19 -3.69 16 10 C -0.10 -4.03 5.11 30.62 0.16 -3.87 16 11 C 0.04 1.94 2.25 -11.46 -0.03 1.92 16 12 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 13 C -0.53 -29.89 8.57 25.60 0.22 -29.67 16 14 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 15 C 0.01 0.53 5.30 84.65 0.45 0.98 16 16 N -0.92 -57.02 11.38 21.45 0.24 -56.77 16 17 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 C 0.13 6.52 5.41 86.36 0.47 6.98 16 22 C 0.12 4.12 6.31 43.51 0.27 4.39 16 23 C -0.05 -1.76 3.96 -11.01 -0.04 -1.80 16 24 C -0.12 -3.09 7.63 31.18 0.24 -2.86 16 25 C -0.13 -2.92 8.09 31.18 0.25 -2.67 16 26 C -0.12 -3.37 7.63 31.12 0.24 -3.13 16 27 N -0.31 -8.57 12.13 -46.68 -0.57 -9.13 16 28 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.22 3.10 7.33 -2.91 -0.02 3.08 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.10 2.36 4.80 -2.39 -0.01 2.35 16 34 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.07 4.63 5.10 -2.39 -0.01 4.61 16 40 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.08 3.14 7.14 -2.39 -0.02 3.12 16 42 H 0.09 2.28 7.80 -2.39 -0.02 2.26 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.09 2.31 8.09 -2.39 -0.02 2.29 16 Total: -1.00 -81.96 372.04 4.33 -77.62 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.96 Total: 19.31 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 5.64 Total: -8.95 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -4.23 Total: -102.21 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.06 Total: -32.70 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -81.96 4.33 -77.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.309 kcal (2) G-P(sol) polarization free energy of solvation -81.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds