Wall clock time and date at job start Tue Mar 31 2020 11:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46956 * 110.99835 * 2 1 4 4 C 1.53053 * 109.36288 * 183.19020 * 3 2 1 5 5 N 1.46956 * 109.36671 * 301.59826 * 4 3 2 6 6 C 1.46898 * 111.00068 * 183.18803 * 5 4 3 7 7 C 1.46956 * 110.87576 * 59.32158 * 5 4 3 8 8 H 1.09001 * 109.49500 * 60.64741 * 7 5 4 9 9 C 1.53008 * 109.48938 * 180.71177 * 7 5 4 10 10 N 1.46506 * 109.46725 * 54.32998 * 9 7 5 11 11 C 1.34771 * 119.99471 * 184.72989 * 10 9 7 12 12 O 1.21608 * 120.00434 * 359.97438 * 11 10 9 13 13 C 1.47444 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.39224 * 120.27843 * 355.24879 * 13 11 10 15 15 C 1.38221 * 120.08559 * 179.72462 * 14 13 11 16 16 C 1.38826 * 120.68162 * 0.55417 * 15 14 13 17 17 C 1.37600 * 120.56402 * 359.72333 * 16 15 14 18 18 C 1.40706 * 119.88562 * 0.02562 * 17 16 15 19 19 C 1.40882 * 120.32989 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00423 * 216.33448 * 19 18 17 21 21 C 1.40277 * 120.00238 * 36.33334 * 19 18 17 22 22 N 1.30628 * 119.99744 * 8.48173 * 21 19 18 23 23 Si 1.86802 * 120.00095 * 188.48586 * 21 19 18 24 24 H 1.48502 * 109.47014 * 59.99844 * 23 21 19 25 25 H 1.48502 * 109.47186 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47212 * 299.99796 * 23 21 19 27 27 C 1.46947 * 111.00288 * 123.80143 * 2 1 3 28 28 H 1.09001 * 109.47003 * 296.19702 * 1 2 3 29 29 H 1.09003 * 109.46815 * 56.19702 * 1 2 3 30 30 H 1.09001 * 109.46985 * 176.19647 * 1 2 3 31 31 H 1.08994 * 109.49464 * 303.15591 * 3 2 1 32 32 H 1.09003 * 109.48905 * 63.20428 * 3 2 1 33 33 H 1.09003 * 109.48971 * 181.63186 * 4 3 2 34 34 H 1.08997 * 109.49025 * 61.56848 * 4 3 2 35 35 H 1.08996 * 109.47322 * 290.19611 * 6 5 4 36 36 H 1.08999 * 109.46692 * 170.19657 * 6 5 4 37 37 H 1.08995 * 109.47069 * 50.19850 * 6 5 4 38 38 H 1.09000 * 109.47273 * 174.32459 * 9 7 5 39 39 H 1.08994 * 109.47024 * 294.33313 * 9 7 5 40 40 H 0.97001 * 120.00298 * 4.72229 * 10 9 7 41 41 H 1.07995 * 119.95672 * 359.97438 * 14 13 11 42 42 H 1.08005 * 119.65942 * 180.25982 * 15 14 13 43 43 H 1.07994 * 119.71575 * 179.74614 * 16 15 14 44 44 H 1.08004 * 120.05736 * 180.02562 * 17 16 15 45 45 H 0.97006 * 119.99924 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.48831 * 56.84192 * 27 2 1 47 47 H 1.08998 * 109.51298 * 296.79265 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5235 1.3291 -0.0804 5 7 4.0502 0.5659 1.0597 6 6 5.5192 0.5659 1.0596 7 6 3.5235 -0.8061 1.0596 8 1 3.8253 -1.3115 0.1422 9 6 4.0771 -1.5654 2.2671 10 7 3.7861 -0.8149 3.4912 11 6 4.2639 -1.2459 4.6754 12 8 4.9362 -2.2579 4.7279 13 6 3.9715 -0.4903 5.9073 14 6 3.2871 0.7203 5.8425 15 6 3.0101 1.4225 7.0004 16 6 3.4178 0.9396 8.2364 17 6 4.1009 -0.2510 8.3318 18 6 4.3910 -0.9880 7.1687 19 6 5.0903 -2.2079 7.2555 20 1 5.7997 -2.4795 6.4878 21 6 4.8652 -3.0700 8.3390 22 7 3.8938 -2.8253 9.1774 23 14 5.9546 -4.5677 8.5829 24 1 7.3634 -4.1318 8.7578 25 1 5.5129 -5.3096 9.7911 26 1 5.8540 -5.4519 7.3942 27 6 1.9957 -0.7632 1.1400 28 1 -0.3633 0.4537 0.9221 29 1 -0.3633 0.5718 -0.8540 30 1 -0.3633 -1.0254 -0.0682 31 1 1.6014 1.9129 -0.8602 32 1 1.6935 1.8775 0.9172 33 1 3.9178 2.3449 -0.0513 34 1 3.8253 0.8480 -1.0107 35 1 5.8825 -0.0382 0.2283 36 1 5.8825 0.1480 1.9984 37 1 5.8825 1.5879 0.9521 38 1 3.6094 -2.5484 2.3238 39 1 5.1555 -1.6817 2.1599 40 1 3.2496 -0.0079 3.4494 41 1 2.9687 1.1093 4.8867 42 1 2.4751 2.3590 6.9425 43 1 3.1966 1.5031 9.1308 44 1 4.4139 -0.6193 9.2976 45 1 3.7384 -3.4212 9.9269 46 1 1.6014 -1.7790 1.1109 47 1 1.6939 -0.2825 2.0705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601151181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:16 Heat of formation + Delta-G solvation = 3.475405 kcal Electronic energy + Delta-G solvation = -27284.533292 eV Core-core repulsion = 23660.057028 eV Total energy + Delta-G solvation = -3624.476264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.91557 -38.59766 -36.74856 -35.73879 -34.08573 -33.50408 -31.23086 -29.86896 -29.50327 -29.22964 -26.40126 -25.44208 -25.15760 -23.37000 -22.36262 -21.58098 -20.78174 -19.69782 -19.12758 -17.47369 -16.44602 -16.05147 -15.91105 -15.43848 -15.15790 -14.85124 -14.70017 -14.44340 -14.16894 -14.02572 -13.88525 -13.59258 -13.07141 -12.65824 -12.64899 -12.58416 -12.33326 -12.19765 -11.96013 -11.91598 -11.58497 -11.51064 -11.38192 -11.08033 -10.98118 -10.88461 -10.64098 -10.60378 -10.45309 -10.06075 -9.62155 -9.20639 -8.62517 -8.40529 -8.29888 -8.21370 -7.53007 -7.27413 -6.73973 -4.33814 2.42245 2.87155 3.12544 3.18819 3.28749 3.68965 3.72635 4.02442 4.16563 4.25770 4.64455 4.74379 4.77126 4.88141 5.07332 5.15466 5.17542 5.31585 5.34027 5.43635 5.48441 5.57628 5.65153 5.67153 5.69646 5.74007 5.86069 5.88849 6.00315 6.03529 6.06773 6.25702 6.34403 6.67818 6.74197 6.76685 6.94935 6.99145 7.00611 7.15575 7.24229 7.34468 7.51581 7.67644 7.93558 8.05383 8.23423 8.51644 8.74057 8.88741 8.96668 9.51920 10.22379 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.003634 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.373611 B = 7702.657990 C = 8337.659800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.054 3.946 4 C 0.058 3.942 5 N -0.536 5.536 6 C 0.024 3.976 7 C 0.077 3.923 8 H 0.060 0.940 9 C 0.132 3.868 10 N -0.735 5.735 11 C 0.564 3.436 12 O -0.544 6.544 13 C -0.257 4.257 14 C -0.056 4.056 15 C -0.245 4.245 16 C -0.097 4.097 17 C -0.147 4.147 18 C 0.148 3.852 19 C -0.423 4.423 20 H 0.108 0.892 21 C 0.070 3.930 22 N -0.797 5.797 23 Si 0.916 3.084 24 H -0.264 1.264 25 H -0.281 1.281 26 H -0.263 1.263 27 C 0.060 3.940 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.025 0.975 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.397 0.603 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.115 0.885 45 H 0.281 0.719 46 H 0.082 0.918 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 6.229 -15.304 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.074 4.074 4 C -0.071 4.071 5 N -0.261 5.261 6 C -0.124 4.124 7 C -0.032 4.032 8 H 0.078 0.922 9 C 0.007 3.993 10 N -0.391 5.391 11 C 0.357 3.643 12 O -0.423 6.423 13 C -0.262 4.262 14 C -0.075 4.075 15 C -0.264 4.264 16 C -0.115 4.115 17 C -0.166 4.166 18 C 0.144 3.856 19 C -0.452 4.452 20 H 0.126 0.874 21 C -0.148 4.148 22 N -0.423 5.423 23 Si 0.741 3.259 24 H -0.188 1.188 25 H -0.206 1.206 26 H -0.187 1.187 27 C -0.068 4.068 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.132 0.868 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.115 5.379 -15.070 16.302 hybrid contribution -0.077 -0.208 0.136 0.260 sum -3.192 5.171 -14.934 16.123 Atomic orbital electron populations 1.22344 0.87074 1.02330 1.00579 1.62172 1.07945 1.13877 1.43104 1.22190 0.94628 0.89460 1.01104 1.22162 0.94319 0.98526 0.92058 1.62079 1.08357 1.13302 1.42393 1.22399 0.86649 1.01641 1.01676 1.21984 0.94339 0.89085 0.97802 0.92193 1.21141 1.00275 0.94477 0.83418 1.45859 1.57432 1.29987 1.05850 1.18402 0.78691 0.84349 0.82826 1.90650 1.39640 1.25910 1.86089 1.19510 1.13646 0.99706 0.93322 1.20663 0.96453 0.94151 0.96217 1.20282 1.11403 1.01760 0.92949 1.20791 0.98456 0.96438 0.95858 1.21327 1.02658 0.93758 0.98897 1.17476 0.87216 0.91737 0.89181 1.20215 1.19269 1.00751 1.04943 0.87389 1.26116 0.94597 1.00093 0.94014 1.69712 1.24777 1.36132 1.11660 0.86227 0.80794 0.80651 0.78260 1.18815 1.20578 1.18704 1.22224 0.93735 0.98826 0.92023 0.95332 0.91475 0.91287 0.90444 0.93737 0.90197 0.94164 0.95666 0.90319 0.91526 0.91831 0.91682 0.76690 0.89230 0.89219 0.89171 0.86752 0.90801 0.90000 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.60 60.07 0.58 0.80 16 2 N -0.55 -5.75 4.97 -242.76 -1.21 -6.96 16 3 C 0.05 0.52 5.62 -3.77 -0.02 0.50 16 4 C 0.06 0.57 5.61 -3.77 -0.02 0.54 16 5 N -0.54 -6.29 4.26 -234.73 -1.00 -7.29 16 6 C 0.02 0.28 8.99 60.06 0.54 0.82 16 7 C 0.08 0.94 2.21 -67.65 -0.15 0.79 16 8 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 9 C 0.13 2.01 4.63 -4.03 -0.02 1.99 16 10 N -0.74 -13.15 5.08 -61.37 -0.31 -13.47 16 11 C 0.56 13.09 7.72 -12.51 -0.10 12.99 16 12 O -0.54 -14.31 13.54 5.27 0.07 -14.24 16 13 C -0.26 -6.34 5.92 -104.36 -0.62 -6.96 16 14 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16 15 C -0.24 -5.28 10.03 -39.37 -0.39 -5.68 16 16 C -0.10 -2.21 10.01 -39.60 -0.40 -2.60 16 17 C -0.15 -3.78 8.62 -38.88 -0.33 -4.11 16 18 C 0.15 4.01 5.48 -106.55 -0.58 3.43 16 19 C -0.42 -11.77 7.74 -37.82 -0.29 -12.06 16 20 H 0.11 3.11 5.79 -52.49 -0.30 2.81 16 21 C 0.07 1.81 5.26 -17.30 -0.09 1.72 16 22 N -0.80 -20.96 11.26 55.56 0.63 -20.34 16 23 Si 0.92 19.95 29.57 -169.99 -5.03 14.92 16 24 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 27 C 0.06 0.71 4.80 -3.77 -0.02 0.69 16 28 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.26 8.12 -51.93 -0.42 -0.16 16 36 H 0.08 1.07 6.74 -51.93 -0.35 0.72 16 37 H 0.07 0.67 8.03 -51.93 -0.42 0.26 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.03 6.83 -51.93 -0.35 0.68 16 40 H 0.40 6.63 5.32 -40.82 -0.22 6.41 16 41 H 0.09 1.67 6.42 -52.49 -0.34 1.33 16 42 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 43 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.11 3.00 6.74 -52.48 -0.35 2.64 16 45 H 0.28 6.76 8.29 -40.82 -0.34 6.42 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.05 0.63 7.09 -51.93 -0.37 0.27 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -29.76 368.57 -10.91 -40.67 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.33 Total: 9.88 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.29 Total: -8.74 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -1.89 Total: -48.05 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.07 Total: -14.24 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.76 -10.91 -40.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601151181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.147 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds