Wall clock time and date at job start Tue Mar 31 2020 11:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46956 * 110.99835 * 2 1 4 4 C 1.53053 * 109.36288 * 183.19020 * 3 2 1 5 5 N 1.46956 * 109.36671 * 301.59826 * 4 3 2 6 6 C 1.46898 * 111.00068 * 183.18803 * 5 4 3 7 7 C 1.46956 * 110.87576 * 59.32158 * 5 4 3 8 8 H 1.09001 * 109.49500 * 60.64741 * 7 5 4 9 9 C 1.53008 * 109.48938 * 180.71177 * 7 5 4 10 10 N 1.46506 * 109.46725 * 54.32998 * 9 7 5 11 11 C 1.34771 * 119.99471 * 184.72989 * 10 9 7 12 12 O 1.21608 * 120.00434 * 359.97438 * 11 10 9 13 13 C 1.47444 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.39224 * 120.27843 * 355.24879 * 13 11 10 15 15 C 1.38221 * 120.08559 * 179.72462 * 14 13 11 16 16 C 1.38826 * 120.68162 * 0.55417 * 15 14 13 17 17 C 1.37600 * 120.56402 * 359.72333 * 16 15 14 18 18 C 1.40706 * 119.88562 * 0.02562 * 17 16 15 19 19 C 1.40882 * 120.32989 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00423 * 216.33448 * 19 18 17 21 21 C 1.40277 * 120.00238 * 36.33334 * 19 18 17 22 22 N 1.30628 * 119.99744 * 8.48173 * 21 19 18 23 23 Si 1.86802 * 120.00095 * 188.48586 * 21 19 18 24 24 H 1.48502 * 109.47014 * 59.99844 * 23 21 19 25 25 H 1.48502 * 109.47186 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47212 * 299.99796 * 23 21 19 27 27 C 1.46947 * 111.00288 * 123.80143 * 2 1 3 28 28 H 1.09001 * 109.47003 * 296.19702 * 1 2 3 29 29 H 1.09003 * 109.46815 * 56.19702 * 1 2 3 30 30 H 1.09001 * 109.46985 * 176.19647 * 1 2 3 31 31 H 1.08994 * 109.49464 * 303.15591 * 3 2 1 32 32 H 1.09003 * 109.48905 * 63.20428 * 3 2 1 33 33 H 1.09003 * 109.48971 * 181.63186 * 4 3 2 34 34 H 1.08997 * 109.49025 * 61.56848 * 4 3 2 35 35 H 1.08996 * 109.47322 * 290.19611 * 6 5 4 36 36 H 1.08999 * 109.46692 * 170.19657 * 6 5 4 37 37 H 1.08995 * 109.47069 * 50.19850 * 6 5 4 38 38 H 1.09000 * 109.47273 * 174.32459 * 9 7 5 39 39 H 1.08994 * 109.47024 * 294.33313 * 9 7 5 40 40 H 0.97001 * 120.00298 * 4.72229 * 10 9 7 41 41 H 1.07995 * 119.95672 * 359.97438 * 14 13 11 42 42 H 1.08005 * 119.65942 * 180.25982 * 15 14 13 43 43 H 1.07994 * 119.71575 * 179.74614 * 16 15 14 44 44 H 1.08004 * 120.05736 * 180.02562 * 17 16 15 45 45 H 0.97006 * 119.99924 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.48831 * 56.84192 * 27 2 1 47 47 H 1.08998 * 109.51298 * 296.79265 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5235 1.3291 -0.0804 5 7 4.0502 0.5659 1.0597 6 6 5.5192 0.5659 1.0596 7 6 3.5235 -0.8061 1.0596 8 1 3.8253 -1.3115 0.1422 9 6 4.0771 -1.5654 2.2671 10 7 3.7861 -0.8149 3.4912 11 6 4.2639 -1.2459 4.6754 12 8 4.9362 -2.2579 4.7279 13 6 3.9715 -0.4903 5.9073 14 6 3.2871 0.7203 5.8425 15 6 3.0101 1.4225 7.0004 16 6 3.4178 0.9396 8.2364 17 6 4.1009 -0.2510 8.3318 18 6 4.3910 -0.9880 7.1687 19 6 5.0903 -2.2079 7.2555 20 1 5.7997 -2.4795 6.4878 21 6 4.8652 -3.0700 8.3390 22 7 3.8938 -2.8253 9.1774 23 14 5.9546 -4.5677 8.5829 24 1 7.3634 -4.1318 8.7578 25 1 5.5129 -5.3096 9.7911 26 1 5.8540 -5.4519 7.3942 27 6 1.9957 -0.7632 1.1400 28 1 -0.3633 0.4537 0.9221 29 1 -0.3633 0.5718 -0.8540 30 1 -0.3633 -1.0254 -0.0682 31 1 1.6014 1.9129 -0.8602 32 1 1.6935 1.8775 0.9172 33 1 3.9178 2.3449 -0.0513 34 1 3.8253 0.8480 -1.0107 35 1 5.8825 -0.0382 0.2283 36 1 5.8825 0.1480 1.9984 37 1 5.8825 1.5879 0.9521 38 1 3.6094 -2.5484 2.3238 39 1 5.1555 -1.6817 2.1599 40 1 3.2496 -0.0079 3.4494 41 1 2.9687 1.1093 4.8867 42 1 2.4751 2.3590 6.9425 43 1 3.1966 1.5031 9.1308 44 1 4.4139 -0.6193 9.2976 45 1 3.7384 -3.4212 9.9269 46 1 1.6014 -1.7790 1.1109 47 1 1.6939 -0.2825 2.0705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601151181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:15 Heat of formation + Delta-G solvation = -16.990298 kcal Electronic energy + Delta-G solvation = -27285.420752 eV Core-core repulsion = 23660.057028 eV Total energy + Delta-G solvation = -3625.363724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.08654 -40.15991 -38.51126 -36.74275 -35.70959 -35.15639 -32.57199 -31.70509 -31.04475 -30.20021 -27.77136 -26.93505 -26.23579 -24.29062 -23.94639 -22.89218 -22.39250 -21.19453 -20.38096 -19.34548 -18.06869 -17.22957 -17.04722 -16.88199 -16.55748 -15.97143 -15.85033 -15.69082 -15.56043 -15.43240 -15.22158 -14.85767 -14.81832 -14.46478 -13.98383 -13.76714 -13.45582 -13.39328 -13.17946 -13.11304 -12.88106 -12.84152 -12.73887 -12.44602 -12.37631 -12.30877 -12.25068 -11.91824 -11.78614 -11.58237 -11.44444 -11.11739 -10.20540 -9.87387 -9.44416 -9.35850 -9.27570 -9.18129 -8.64833 -6.34564 0.54939 1.03642 1.34031 1.45559 1.51659 2.22617 2.39981 2.50542 2.82680 2.90826 2.92303 3.68965 3.74609 3.82856 4.02642 4.19172 4.25023 4.35627 4.38537 4.41003 4.51319 4.53228 4.58170 4.62203 4.63695 4.71478 4.74297 4.76562 4.86508 4.95456 4.99212 5.02395 5.05757 5.08335 5.11689 5.26585 5.36341 5.63893 5.70349 5.84296 5.92388 5.93381 6.07186 6.11220 6.14391 6.15009 6.37133 6.68833 6.85111 6.95762 7.06126 7.73654 8.33426 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.003634 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.373611 B = 7702.657990 C = 8337.659800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.551 5.551 3 C 0.054 3.946 4 C 0.059 3.941 5 N -0.547 5.547 6 C 0.028 3.972 7 C 0.090 3.910 8 H 0.068 0.932 9 C 0.133 3.867 10 N -0.712 5.712 11 C 0.559 3.441 12 O -0.583 6.583 13 C -0.275 4.275 14 C -0.053 4.053 15 C -0.234 4.234 16 C -0.093 4.093 17 C -0.175 4.175 18 C 0.118 3.882 19 C -0.464 4.464 20 H 0.085 0.915 21 C 0.032 3.968 22 N -0.826 5.826 23 Si 0.978 3.022 24 H -0.258 1.258 25 H -0.260 1.260 26 H -0.273 1.273 27 C 0.064 3.936 28 H 0.024 0.976 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.406 0.594 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.288 0.712 46 H 0.082 0.918 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 8.135 -17.007 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.074 4.074 4 C -0.068 4.068 5 N -0.273 5.273 6 C -0.120 4.120 7 C -0.019 4.019 8 H 0.086 0.914 9 C 0.008 3.992 10 N -0.366 5.366 11 C 0.352 3.648 12 O -0.465 6.465 13 C -0.280 4.280 14 C -0.071 4.071 15 C -0.253 4.253 16 C -0.111 4.111 17 C -0.195 4.195 18 C 0.114 3.886 19 C -0.493 4.493 20 H 0.103 0.897 21 C -0.182 4.182 22 N -0.453 5.453 23 Si 0.799 3.201 24 H -0.182 1.182 25 H -0.184 1.184 26 H -0.198 1.198 27 C -0.065 4.065 28 H 0.043 0.957 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.055 0.945 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.243 0.757 41 H 0.143 0.857 42 H 0.149 0.851 43 H 0.138 0.862 44 H 0.116 0.884 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.377 7.332 -16.804 18.849 hybrid contribution 0.208 -0.604 0.523 0.825 sum -4.169 6.728 -16.281 18.103 Atomic orbital electron populations 1.22400 0.85994 1.02833 1.01104 1.62201 1.08959 1.14362 1.42020 1.22261 0.94459 0.88986 1.01647 1.22228 0.94464 0.98932 0.91190 1.62076 1.08507 1.12867 1.43833 1.22330 0.86609 1.02532 1.00510 1.21800 0.94647 0.89365 0.96136 0.91380 1.21256 0.99983 0.94563 0.83410 1.45593 1.55889 1.29872 1.05262 1.18413 0.78583 0.83857 0.83977 1.90628 1.41487 1.27548 1.86837 1.19891 1.13815 1.01023 0.93300 1.21006 0.95098 0.92827 0.98196 1.20783 1.09839 1.02701 0.92018 1.21165 0.96765 0.95294 0.97886 1.21275 1.04911 0.95356 0.97915 1.17844 0.87912 0.92092 0.90768 1.20177 1.20895 1.02383 1.05874 0.89694 1.26783 0.95616 1.02378 0.93441 1.69739 1.25795 1.37455 1.12315 0.85324 0.79297 0.77198 0.78248 1.18245 1.18407 1.19840 1.22134 0.93223 0.99090 0.92045 0.95745 0.89781 0.91068 0.88357 0.94531 0.88655 0.93895 0.94810 0.93086 0.90005 0.92395 0.92551 0.75670 0.85724 0.85114 0.86209 0.88449 0.90134 0.89968 0.94790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.60 127.69 1.23 1.60 16 2 N -0.55 -10.21 4.97 -921.94 -4.58 -14.79 16 3 C 0.05 0.88 5.62 86.31 0.49 1.37 16 4 C 0.06 0.99 5.61 86.31 0.48 1.47 16 5 N -0.55 -11.73 4.26 -896.54 -3.82 -15.55 16 6 C 0.03 0.60 8.99 127.69 1.15 1.75 16 7 C 0.09 2.06 2.21 44.93 0.10 2.16 16 8 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 9 C 0.13 4.03 4.63 86.38 0.40 4.43 16 10 N -0.71 -25.37 5.08 -466.34 -2.37 -27.73 16 11 C 0.56 26.63 7.72 86.67 0.67 27.29 16 12 O -0.58 -32.22 13.54 -4.06 -0.05 -32.28 16 13 C -0.28 -13.77 5.92 -19.70 -0.12 -13.89 16 14 C -0.05 -2.18 9.52 22.50 0.21 -1.97 16 15 C -0.23 -9.38 10.03 22.41 0.22 -9.16 16 16 C -0.09 -4.08 10.01 22.26 0.22 -3.86 16 17 C -0.18 -9.20 8.62 22.72 0.20 -9.00 16 18 C 0.12 6.60 5.48 -21.11 -0.12 6.49 16 19 C -0.46 -27.27 7.74 23.41 0.18 -27.09 16 20 H 0.09 5.25 5.79 -2.91 -0.02 5.23 16 21 C 0.03 1.75 5.26 85.37 0.45 2.20 16 22 N -0.83 -45.03 11.26 21.88 0.25 -44.78 16 23 Si 0.98 42.53 29.57 68.60 2.03 44.56 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 26 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 27 C 0.06 1.39 4.80 86.31 0.41 1.81 16 28 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.08 1.00 8.13 -2.39 -0.02 0.98 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.20 8.13 -2.39 -0.02 1.18 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 1.31 8.07 -2.39 -0.02 1.29 16 34 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.03 0.65 8.12 -2.39 -0.02 0.63 16 36 H 0.05 1.37 6.74 -2.39 -0.02 1.36 16 37 H 0.08 1.48 8.03 -2.39 -0.02 1.46 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.06 1.83 6.83 -2.39 -0.02 1.82 16 40 H 0.41 12.99 5.32 -92.71 -0.49 12.50 16 41 H 0.13 4.22 6.42 -2.91 -0.02 4.20 16 42 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 43 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 44 H 0.10 5.33 6.74 -2.91 -0.02 5.31 16 45 H 0.29 14.22 8.29 -92.70 -0.77 13.45 16 46 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.03 0.84 7.09 -2.39 -0.02 0.82 16 Total: -1.00 -67.64 368.57 -1.89 -69.53 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: 0.47 Total: 35.45 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 6.18 Total: -14.40 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -10.52 Total: -102.86 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.05 Total: -32.28 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -67.64 -1.89 -69.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601151181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.542 kcal (2) G-P(sol) polarization free energy of solvation -67.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds