Wall clock time and date at job start Tue Mar 31 2020 11:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46956 * 110.99794 * 2 1 4 4 C 1.53053 * 109.36882 * 176.81196 * 3 2 1 5 5 N 1.46956 * 109.36115 * 58.40167 * 4 3 2 6 6 C 1.46903 * 110.99882 * 176.81561 * 5 4 3 7 7 C 1.46962 * 110.88216 * 300.68010 * 5 4 3 8 8 H 1.08998 * 109.50782 * 299.34366 * 7 5 4 9 9 C 1.52997 * 109.48890 * 179.28773 * 7 5 4 10 10 N 1.46501 * 109.47336 * 305.60285 * 9 7 5 11 11 C 1.34775 * 120.00089 * 176.05503 * 10 9 7 12 12 O 1.21615 * 119.99613 * 359.97438 * 11 10 9 13 13 C 1.47427 * 119.99929 * 180.02562 * 11 10 9 14 14 C 1.39222 * 120.28578 * 4.07309 * 13 11 10 15 15 C 1.38221 * 120.09598 * 179.97438 * 14 13 11 16 16 C 1.38824 * 120.67533 * 359.97438 * 15 14 13 17 17 C 1.37599 * 120.56677 * 0.02562 * 16 15 14 18 18 C 1.40700 * 119.88440 * 359.97438 * 17 16 15 19 19 C 1.40900 * 120.32756 * 180.02562 * 18 17 16 20 20 H 1.07991 * 119.99765 * 142.25308 * 19 18 17 21 21 C 1.40274 * 119.99753 * 322.24651 * 19 18 17 22 22 N 1.30633 * 120.00282 * 350.79484 * 21 19 18 23 23 Si 1.86800 * 119.99981 * 170.78929 * 21 19 18 24 24 H 1.48500 * 109.47026 * 60.00149 * 23 21 19 25 25 H 1.48496 * 109.47381 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46956 * 300.00652 * 23 21 19 27 27 C 1.46956 * 111.00333 * 236.20516 * 2 1 3 28 28 H 1.09007 * 109.46482 * 183.80169 * 1 2 3 29 29 H 1.08997 * 109.47578 * 303.79333 * 1 2 3 30 30 H 1.08995 * 109.47644 * 63.80231 * 1 2 3 31 31 H 1.08999 * 109.49423 * 296.78058 * 3 2 1 32 32 H 1.09001 * 109.48805 * 56.82298 * 3 2 1 33 33 H 1.08995 * 109.49401 * 178.36794 * 4 3 2 34 34 H 1.09003 * 109.48830 * 298.41602 * 4 3 2 35 35 H 1.08997 * 109.46927 * 190.08498 * 6 5 4 36 36 H 1.08994 * 109.47038 * 310.08425 * 6 5 4 37 37 H 1.08994 * 109.47002 * 70.08472 * 6 5 4 38 38 H 1.09008 * 109.46954 * 185.60037 * 9 7 5 39 39 H 1.09003 * 109.47125 * 65.60350 * 9 7 5 40 40 H 0.97002 * 119.99772 * 356.05581 * 10 9 7 41 41 H 1.08004 * 119.95132 * 359.97438 * 14 13 11 42 42 H 1.08002 * 119.65998 * 179.97438 * 15 14 13 43 43 H 1.07999 * 119.71652 * 180.28174 * 16 15 14 44 44 H 1.08001 * 120.05302 * 180.02562 * 17 16 15 45 45 H 0.96994 * 120.00316 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.48974 * 63.21698 * 27 2 1 47 47 H 1.09001 * 109.48749 * 303.15001 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5234 1.3293 0.0803 5 7 4.0500 0.5661 -1.0598 6 6 5.5190 0.5662 -1.0598 7 6 3.5235 -0.8059 -1.0598 8 1 3.8254 -1.3117 -0.1427 9 6 4.0770 -1.5651 -2.2674 10 7 3.7845 -0.8154 -3.4916 11 6 4.2486 -1.2548 -4.6781 12 8 4.9108 -2.2735 -4.7324 13 6 3.9547 -0.5001 -5.9099 14 6 3.2711 0.7110 -5.8451 15 6 2.9980 1.4156 -7.0024 16 6 3.3995 0.9293 -8.2391 17 6 4.0768 -0.2647 -8.3352 18 6 4.3673 -1.0014 -7.1722 19 6 5.0607 -2.2248 -7.2597 20 1 5.7880 -2.4883 -6.5061 21 6 4.8063 -3.1005 -8.3256 22 7 3.8065 -2.8717 -9.1346 23 14 5.8973 -4.5939 -8.5882 24 1 5.8415 -5.4651 -7.3870 25 1 5.4208 -5.3530 -9.7722 26 1 7.2967 -4.1510 -8.8138 27 6 1.9957 -0.7631 -1.1401 28 1 -0.3632 -1.0255 0.0681 29 1 -0.3634 0.5716 0.8540 30 1 -0.3634 0.4536 -0.9220 31 1 1.6937 1.8775 -0.9173 32 1 1.6009 1.9130 0.8601 33 1 3.9177 2.3450 0.0512 34 1 3.8253 0.8484 1.0108 35 1 5.8823 0.1529 -2.0007 36 1 5.8823 1.5876 -0.9473 37 1 5.8824 -0.0420 -0.2315 38 1 3.6103 -2.5486 -2.3233 39 1 5.1557 -1.6802 -2.1609 40 1 3.2567 -0.0027 -3.4481 41 1 2.9537 1.1005 -4.8890 42 1 2.4669 2.3542 -6.9439 43 1 3.1820 1.4948 -9.1331 44 1 4.3856 -0.6351 -9.3015 45 1 3.6308 -3.4770 -9.8718 46 1 1.6938 -0.2819 -2.0704 47 1 1.6014 -1.7789 -1.1111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601151182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:20 Heat of formation + Delta-G solvation = 3.261639 kcal Electronic energy + Delta-G solvation = -27285.523135 eV Core-core repulsion = 23661.037602 eV Total energy + Delta-G solvation = -3624.485534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.91564 -38.59838 -36.75217 -35.73961 -34.08131 -33.49087 -31.23345 -29.87080 -29.51041 -29.23784 -26.40073 -25.44220 -25.15380 -23.37046 -22.36719 -21.58398 -20.78760 -19.69781 -19.12713 -17.46852 -16.44750 -16.05596 -15.90952 -15.43887 -15.15305 -14.85078 -14.70199 -14.44294 -14.17073 -14.02397 -13.89027 -13.59599 -13.07213 -12.65883 -12.64524 -12.58695 -12.33293 -12.19958 -11.95815 -11.91553 -11.58718 -11.51513 -11.38241 -11.08094 -10.98769 -10.88718 -10.64701 -10.60738 -10.45710 -10.06403 -9.61546 -9.19273 -8.62608 -8.40802 -8.31353 -8.21374 -7.53754 -7.26599 -6.73446 -4.33139 2.41647 2.86890 3.13057 3.19289 3.28534 3.68852 3.72630 4.03279 4.16466 4.25474 4.64485 4.74538 4.77287 4.88122 5.07325 5.15482 5.17584 5.31601 5.34087 5.43568 5.48181 5.57618 5.64149 5.67299 5.69342 5.74006 5.85975 5.88868 6.00315 6.03109 6.06137 6.25074 6.33514 6.67114 6.74212 6.76662 6.94762 6.98768 6.99279 7.15206 7.24341 7.34410 7.50572 7.66610 7.92097 8.05014 8.22656 8.51667 8.74164 8.88110 8.96586 9.51648 10.23834 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016159 B = 0.003638 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.379707 B = 7694.681240 C = 8321.804906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.054 3.946 4 C 0.058 3.942 5 N -0.536 5.536 6 C 0.024 3.976 7 C 0.077 3.923 8 H 0.060 0.940 9 C 0.133 3.867 10 N -0.736 5.736 11 C 0.563 3.437 12 O -0.543 6.543 13 C -0.255 4.255 14 C -0.056 4.056 15 C -0.244 4.244 16 C -0.096 4.096 17 C -0.147 4.147 18 C 0.150 3.850 19 C -0.424 4.424 20 H 0.107 0.893 21 C 0.070 3.930 22 N -0.798 5.798 23 Si 0.915 3.085 24 H -0.263 1.263 25 H -0.281 1.281 26 H -0.264 1.264 27 C 0.060 3.940 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.025 0.975 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.397 0.603 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.112 0.888 45 H 0.281 0.719 46 H 0.048 0.952 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.361 6.385 15.289 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.074 4.074 4 C -0.071 4.071 5 N -0.261 5.261 6 C -0.124 4.124 7 C -0.032 4.032 8 H 0.078 0.922 9 C 0.007 3.993 10 N -0.392 5.392 11 C 0.357 3.643 12 O -0.422 6.422 13 C -0.260 4.260 14 C -0.075 4.075 15 C -0.263 4.263 16 C -0.115 4.115 17 C -0.166 4.166 18 C 0.146 3.854 19 C -0.453 4.453 20 H 0.125 0.875 21 C -0.147 4.147 22 N -0.424 5.424 23 Si 0.740 3.260 24 H -0.187 1.187 25 H -0.206 1.206 26 H -0.188 1.188 27 C -0.068 4.068 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.130 0.870 45 H 0.092 0.908 46 H 0.067 0.933 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.004 5.526 15.060 16.321 hybrid contribution -0.074 -0.214 -0.140 0.266 sum -3.078 5.313 14.920 16.134 Atomic orbital electron populations 1.22341 0.87074 1.02333 1.00578 1.62174 1.07947 1.13873 1.43105 1.22191 0.94626 0.89465 1.01105 1.22161 0.94322 0.98523 0.92057 1.62084 1.08359 1.13309 1.42392 1.22400 0.86652 1.01619 1.01697 1.21982 0.94346 0.89074 0.97802 0.92186 1.21139 1.00235 0.94518 0.83411 1.45863 1.58199 1.29389 1.05701 1.18395 0.78642 0.84436 0.82829 1.90660 1.39870 1.25482 1.86171 1.19523 1.13514 0.99649 0.93336 1.20672 0.96457 0.94138 0.96240 1.20285 1.11443 1.01638 0.92935 1.20788 0.98427 0.96404 0.95875 1.21294 1.02740 0.93787 0.98777 1.17474 0.87072 0.91745 0.89143 1.20147 1.18721 1.00341 1.06081 0.87545 1.26087 0.94624 1.00084 0.93926 1.69707 1.23764 1.35977 1.12937 0.86243 0.80794 0.80654 0.78332 1.18721 1.20589 1.18828 1.22226 0.93729 0.98830 0.92022 0.91288 0.91476 0.95331 0.93741 0.90443 0.90197 0.94163 0.90323 0.91529 0.95655 0.91799 0.91724 0.76684 0.89212 0.89182 0.89147 0.86968 0.90814 0.93344 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.60 60.06 0.58 0.80 16 2 N -0.55 -5.76 4.97 -242.76 -1.21 -6.96 16 3 C 0.05 0.52 5.62 -3.77 -0.02 0.50 16 4 C 0.06 0.56 5.61 -3.77 -0.02 0.54 16 5 N -0.54 -6.28 4.25 -234.73 -1.00 -7.28 16 6 C 0.02 0.27 8.98 60.07 0.54 0.81 16 7 C 0.08 0.94 2.21 -67.65 -0.15 0.79 16 8 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 9 C 0.13 2.01 4.63 -4.04 -0.02 1.99 16 10 N -0.74 -13.16 5.07 -61.38 -0.31 -13.47 16 11 C 0.56 13.08 7.73 -12.52 -0.10 12.99 16 12 O -0.54 -14.30 13.57 5.26 0.07 -14.23 16 13 C -0.26 -6.30 5.92 -104.37 -0.62 -6.91 16 14 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16 15 C -0.24 -5.25 10.03 -39.37 -0.39 -5.64 16 16 C -0.10 -2.19 10.01 -39.60 -0.40 -2.58 16 17 C -0.15 -3.76 8.61 -38.89 -0.33 -4.10 16 18 C 0.15 4.05 5.45 -106.54 -0.58 3.47 16 19 C -0.42 -11.80 7.67 -37.81 -0.29 -12.09 16 20 H 0.11 3.07 5.88 -52.49 -0.31 2.76 16 21 C 0.07 1.84 5.24 -17.30 -0.09 1.75 16 22 N -0.80 -21.06 11.41 55.56 0.63 -20.43 16 23 Si 0.92 19.98 29.57 -169.99 -5.03 14.95 16 24 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 27 C 0.06 0.71 4.80 -3.77 -0.02 0.69 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 33 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 1.06 6.75 -51.93 -0.35 0.71 16 36 H 0.07 0.67 8.02 -51.93 -0.42 0.25 16 37 H 0.02 0.26 8.12 -51.93 -0.42 -0.16 16 38 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.06 1.03 6.83 -51.93 -0.35 0.67 16 40 H 0.40 6.63 5.32 -40.82 -0.22 6.41 16 41 H 0.09 1.67 6.42 -52.48 -0.34 1.33 16 42 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 43 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.11 2.93 6.88 -52.49 -0.36 2.57 16 45 H 0.28 6.78 8.29 -40.82 -0.34 6.44 16 46 H 0.05 0.64 7.10 -51.93 -0.37 0.27 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -29.81 368.87 -10.91 -40.72 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.34 Total: 9.72 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -2.29 Total: -8.58 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -1.88 Total: -48.13 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.07 Total: -14.23 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.81 -10.91 -40.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601151182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.981 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds