Wall clock time and date at job start Tue Mar 31 2020 11:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46956 * 110.99794 * 2 1 4 4 C 1.53053 * 109.36882 * 176.81196 * 3 2 1 5 5 N 1.46956 * 109.36115 * 58.40167 * 4 3 2 6 6 C 1.46903 * 110.99882 * 176.81561 * 5 4 3 7 7 C 1.46962 * 110.88216 * 300.68010 * 5 4 3 8 8 H 1.08998 * 109.50782 * 299.34366 * 7 5 4 9 9 C 1.52997 * 109.48890 * 179.28773 * 7 5 4 10 10 N 1.46501 * 109.47336 * 305.60285 * 9 7 5 11 11 C 1.34775 * 120.00089 * 176.05503 * 10 9 7 12 12 O 1.21615 * 119.99613 * 359.97438 * 11 10 9 13 13 C 1.47427 * 119.99929 * 180.02562 * 11 10 9 14 14 C 1.39222 * 120.28578 * 4.07309 * 13 11 10 15 15 C 1.38221 * 120.09598 * 179.97438 * 14 13 11 16 16 C 1.38824 * 120.67533 * 359.97438 * 15 14 13 17 17 C 1.37599 * 120.56677 * 0.02562 * 16 15 14 18 18 C 1.40700 * 119.88440 * 359.97438 * 17 16 15 19 19 C 1.40900 * 120.32756 * 180.02562 * 18 17 16 20 20 H 1.07991 * 119.99765 * 142.25308 * 19 18 17 21 21 C 1.40274 * 119.99753 * 322.24651 * 19 18 17 22 22 N 1.30633 * 120.00282 * 350.79484 * 21 19 18 23 23 Si 1.86800 * 119.99981 * 170.78929 * 21 19 18 24 24 H 1.48500 * 109.47026 * 60.00149 * 23 21 19 25 25 H 1.48496 * 109.47381 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46956 * 300.00652 * 23 21 19 27 27 C 1.46956 * 111.00333 * 236.20516 * 2 1 3 28 28 H 1.09007 * 109.46482 * 183.80169 * 1 2 3 29 29 H 1.08997 * 109.47578 * 303.79333 * 1 2 3 30 30 H 1.08995 * 109.47644 * 63.80231 * 1 2 3 31 31 H 1.08999 * 109.49423 * 296.78058 * 3 2 1 32 32 H 1.09001 * 109.48805 * 56.82298 * 3 2 1 33 33 H 1.08995 * 109.49401 * 178.36794 * 4 3 2 34 34 H 1.09003 * 109.48830 * 298.41602 * 4 3 2 35 35 H 1.08997 * 109.46927 * 190.08498 * 6 5 4 36 36 H 1.08994 * 109.47038 * 310.08425 * 6 5 4 37 37 H 1.08994 * 109.47002 * 70.08472 * 6 5 4 38 38 H 1.09008 * 109.46954 * 185.60037 * 9 7 5 39 39 H 1.09003 * 109.47125 * 65.60350 * 9 7 5 40 40 H 0.97002 * 119.99772 * 356.05581 * 10 9 7 41 41 H 1.08004 * 119.95132 * 359.97438 * 14 13 11 42 42 H 1.08002 * 119.65998 * 179.97438 * 15 14 13 43 43 H 1.07999 * 119.71652 * 180.28174 * 16 15 14 44 44 H 1.08001 * 120.05302 * 180.02562 * 17 16 15 45 45 H 0.96994 * 120.00316 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.48974 * 63.21698 * 27 2 1 47 47 H 1.09001 * 109.48749 * 303.15001 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5234 1.3293 0.0803 5 7 4.0500 0.5661 -1.0598 6 6 5.5190 0.5662 -1.0598 7 6 3.5235 -0.8059 -1.0598 8 1 3.8254 -1.3117 -0.1427 9 6 4.0770 -1.5651 -2.2674 10 7 3.7845 -0.8154 -3.4916 11 6 4.2486 -1.2548 -4.6781 12 8 4.9108 -2.2735 -4.7324 13 6 3.9547 -0.5001 -5.9099 14 6 3.2711 0.7110 -5.8451 15 6 2.9980 1.4156 -7.0024 16 6 3.3995 0.9293 -8.2391 17 6 4.0768 -0.2647 -8.3352 18 6 4.3673 -1.0014 -7.1722 19 6 5.0607 -2.2248 -7.2597 20 1 5.7880 -2.4883 -6.5061 21 6 4.8063 -3.1005 -8.3256 22 7 3.8065 -2.8717 -9.1346 23 14 5.8973 -4.5939 -8.5882 24 1 5.8415 -5.4651 -7.3870 25 1 5.4208 -5.3530 -9.7722 26 1 7.2967 -4.1510 -8.8138 27 6 1.9957 -0.7631 -1.1401 28 1 -0.3632 -1.0255 0.0681 29 1 -0.3634 0.5716 0.8540 30 1 -0.3634 0.4536 -0.9220 31 1 1.6937 1.8775 -0.9173 32 1 1.6009 1.9130 0.8601 33 1 3.9177 2.3450 0.0512 34 1 3.8253 0.8484 1.0108 35 1 5.8823 0.1529 -2.0007 36 1 5.8823 1.5876 -0.9473 37 1 5.8824 -0.0420 -0.2315 38 1 3.6103 -2.5486 -2.3233 39 1 5.1557 -1.6802 -2.1609 40 1 3.2567 -0.0027 -3.4481 41 1 2.9537 1.1005 -4.8890 42 1 2.4669 2.3542 -6.9439 43 1 3.1820 1.4948 -9.1331 44 1 4.3856 -0.6351 -9.3015 45 1 3.6308 -3.4770 -9.8718 46 1 1.6938 -0.2819 -2.0704 47 1 1.6014 -1.7789 -1.1111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601151182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:19 Heat of formation + Delta-G solvation = -17.267872 kcal Electronic energy + Delta-G solvation = -27286.413362 eV Core-core repulsion = 23661.037602 eV Total energy + Delta-G solvation = -3625.375760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08691 -40.16068 -38.51382 -36.74350 -35.69966 -35.15113 -32.57656 -31.70717 -31.05509 -30.20042 -27.76970 -26.93326 -26.23555 -24.29151 -23.95071 -22.89710 -22.39445 -21.19288 -20.38139 -19.34032 -18.07283 -17.23136 -17.04300 -16.88213 -16.56088 -15.97398 -15.85073 -15.68784 -15.55650 -15.44071 -15.22448 -14.85763 -14.81864 -14.46274 -13.98388 -13.76976 -13.45828 -13.39809 -13.17881 -13.11410 -12.89014 -12.84364 -12.74247 -12.45228 -12.37596 -12.30915 -12.25155 -11.92225 -11.78594 -11.58362 -11.44016 -11.10746 -10.22225 -9.87523 -9.44521 -9.36236 -9.27653 -9.17159 -8.64675 -6.34119 0.54489 1.03323 1.34038 1.45570 1.51199 2.22978 2.39750 2.50327 2.82866 2.90756 2.92222 3.68842 3.73669 3.82693 4.02675 4.19143 4.24985 4.35193 4.38563 4.40676 4.51184 4.53349 4.57712 4.62075 4.63557 4.71366 4.74256 4.76557 4.86414 4.95255 4.99179 5.02348 5.05727 5.08346 5.10402 5.26166 5.36182 5.63128 5.70334 5.83575 5.92347 5.93312 6.06261 6.10947 6.14197 6.14920 6.36763 6.68237 6.85470 6.95228 7.05895 7.73404 8.34544 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016159 B = 0.003638 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.379707 B = 7694.681240 C = 8321.804906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.551 5.551 3 C 0.054 3.946 4 C 0.060 3.940 5 N -0.547 5.547 6 C 0.028 3.972 7 C 0.090 3.910 8 H 0.068 0.932 9 C 0.133 3.867 10 N -0.712 5.712 11 C 0.558 3.442 12 O -0.582 6.582 13 C -0.274 4.274 14 C -0.053 4.053 15 C -0.233 4.233 16 C -0.092 4.092 17 C -0.174 4.174 18 C 0.119 3.881 19 C -0.465 4.465 20 H 0.083 0.917 21 C 0.033 3.967 22 N -0.828 5.828 23 Si 0.977 3.023 24 H -0.274 1.274 25 H -0.261 1.261 26 H -0.258 1.258 27 C 0.064 3.936 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.024 0.976 31 H 0.036 0.964 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.033 0.967 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.406 0.594 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.288 0.712 46 H 0.034 0.966 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 8.347 16.991 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.074 4.074 4 C -0.068 4.068 5 N -0.273 5.273 6 C -0.120 4.120 7 C -0.019 4.019 8 H 0.086 0.914 9 C 0.008 3.992 10 N -0.366 5.366 11 C 0.351 3.649 12 O -0.464 6.464 13 C -0.279 4.279 14 C -0.072 4.072 15 C -0.252 4.252 16 C -0.111 4.111 17 C -0.194 4.194 18 C 0.116 3.884 19 C -0.494 4.494 20 H 0.101 0.899 21 C -0.181 4.181 22 N -0.455 5.455 23 Si 0.798 3.202 24 H -0.199 1.199 25 H -0.184 1.184 26 H -0.182 1.182 27 C -0.065 4.065 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.243 0.757 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.139 0.861 44 H 0.113 0.887 45 H 0.098 0.902 46 H 0.052 0.948 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.254 7.536 16.792 18.891 hybrid contribution 0.209 -0.622 -0.524 0.840 sum -4.045 6.914 16.268 18.133 Atomic orbital electron populations 1.22397 0.86002 1.02828 1.01106 1.62202 1.08955 1.14370 1.42013 1.22263 0.94469 0.88979 1.01651 1.22228 0.94456 0.98938 0.91190 1.62080 1.08523 1.12852 1.43829 1.22333 0.86595 1.02536 1.00530 1.21796 0.94640 0.89371 0.96130 0.91375 1.21253 0.99957 0.94582 0.83411 1.45596 1.56642 1.29287 1.05106 1.18412 0.78520 0.83942 0.83993 1.90638 1.41736 1.27141 1.86922 1.19903 1.13690 1.00968 0.93302 1.21016 0.95100 0.92811 0.98238 1.20791 1.09813 1.02595 0.91992 1.21166 0.96714 0.95253 0.97919 1.21242 1.04980 0.95377 0.97775 1.17840 0.87776 0.92088 0.90738 1.20104 1.20263 1.01977 1.07072 0.89887 1.26751 0.95644 1.02351 0.93376 1.69733 1.24804 1.37316 1.13646 0.85340 0.79335 0.77242 0.78243 1.19880 1.18448 1.18213 1.22135 0.93234 0.99077 0.92046 0.91084 0.89773 0.95747 0.94529 0.88353 0.88637 0.93895 0.93069 0.89983 0.94813 0.92419 0.92560 0.75656 0.85696 0.85045 0.86142 0.88670 0.90169 0.94789 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.60 127.69 1.23 1.60 16 2 N -0.55 -10.22 4.97 -921.95 -4.58 -14.80 16 3 C 0.05 0.88 5.62 86.31 0.49 1.36 16 4 C 0.06 0.99 5.61 86.31 0.48 1.47 16 5 N -0.55 -11.70 4.25 -896.55 -3.81 -15.51 16 6 C 0.03 0.59 8.98 127.69 1.15 1.74 16 7 C 0.09 2.06 2.21 44.92 0.10 2.16 16 8 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 9 C 0.13 4.03 4.63 86.38 0.40 4.43 16 10 N -0.71 -25.37 5.07 -466.35 -2.37 -27.74 16 11 C 0.56 26.63 7.73 86.66 0.67 27.30 16 12 O -0.58 -32.25 13.57 -4.08 -0.06 -32.31 16 13 C -0.27 -13.68 5.92 -19.70 -0.12 -13.79 16 14 C -0.05 -2.19 9.52 22.50 0.21 -1.98 16 15 C -0.23 -9.28 10.03 22.41 0.22 -9.05 16 16 C -0.09 -4.04 10.01 22.26 0.22 -3.82 16 17 C -0.17 -9.13 8.61 22.72 0.20 -8.94 16 18 C 0.12 6.69 5.45 -21.11 -0.12 6.58 16 19 C -0.46 -27.33 7.67 23.42 0.18 -27.15 16 20 H 0.08 5.14 5.88 -2.92 -0.02 5.12 16 21 C 0.03 1.79 5.24 85.37 0.45 2.24 16 22 N -0.83 -45.30 11.41 21.88 0.25 -45.05 16 23 Si 0.98 42.63 29.57 68.60 2.03 44.66 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 25 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 26 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 27 C 0.06 1.40 4.80 86.31 0.41 1.81 16 28 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.08 1.00 8.13 -2.39 -0.02 0.98 16 30 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 1.20 8.13 -2.39 -0.02 1.18 16 33 H 0.10 1.31 8.07 -2.39 -0.02 1.29 16 34 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 1.37 6.75 -2.39 -0.02 1.35 16 36 H 0.08 1.47 8.02 -2.39 -0.02 1.45 16 37 H 0.03 0.65 8.12 -2.39 -0.02 0.63 16 38 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.06 1.83 6.83 -2.39 -0.02 1.81 16 40 H 0.41 12.98 5.32 -92.71 -0.49 12.49 16 41 H 0.13 4.21 6.42 -2.91 -0.02 4.19 16 42 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 43 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 44 H 0.10 5.20 6.88 -2.91 -0.02 5.18 16 45 H 0.29 14.28 8.29 -92.71 -0.77 13.51 16 46 H 0.03 0.84 7.10 -2.39 -0.02 0.82 16 47 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -67.82 368.87 -1.88 -69.71 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: 0.47 Total: 35.07 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 6.18 Total: -14.03 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -10.51 Total: -103.10 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.06 Total: -32.31 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -67.82 -1.88 -69.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601151182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.440 kcal (2) G-P(sol) polarization free energy of solvation -67.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds