Wall clock time and date at job start Tue Mar 31 2020 11:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99668 * 2 1 4 4 C 1.50699 * 109.46727 * 293.94579 * 3 2 1 5 5 H 1.07994 * 120.00404 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99547 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99974 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 120.00267 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47379 * 89.99549 * 8 6 4 10 10 H 1.48504 * 109.47106 * 209.99404 * 8 6 4 11 11 H 1.48500 * 109.47213 * 329.99308 * 8 6 4 12 12 C 1.46899 * 110.99753 * 123.95013 * 2 1 3 13 13 C 1.52998 * 109.47362 * 66.04994 * 12 2 1 14 14 H 1.08998 * 109.46732 * 304.99985 * 13 12 2 15 15 O 1.42899 * 109.47279 * 64.99636 * 13 12 2 16 16 C 1.53003 * 109.47202 * 185.00011 * 13 12 2 17 17 N 1.46903 * 109.47090 * 179.97438 * 16 13 12 18 18 C 1.46893 * 110.99924 * 179.97438 * 17 16 13 19 19 C 1.50706 * 109.47176 * 179.97438 * 18 17 16 20 20 C 1.36660 * 120.11738 * 259.73229 * 19 18 17 21 21 C 1.38795 * 120.52206 * 179.76048 * 20 19 18 22 22 C 1.37784 * 120.66976 * 0.49327 * 21 20 19 23 23 C 1.39085 * 119.77679 * 359.76843 * 22 21 20 24 24 N 1.37691 * 133.51621 * 180.02562 * 23 22 21 25 25 H 0.97000 * 125.06062 * 359.97219 * 24 23 22 26 26 C 1.36832 * 109.87691 * 179.97438 * 24 23 22 27 27 C 1.34233 * 109.93939 * 359.97438 * 26 24 23 28 28 C 1.39588 * 120.11685 * 80.00081 * 19 18 17 29 29 H 1.08999 * 109.47704 * 296.04778 * 1 2 3 30 30 H 1.08998 * 109.47140 * 56.05291 * 1 2 3 31 31 H 1.09008 * 109.46978 * 176.04825 * 1 2 3 32 32 H 1.08995 * 109.47593 * 53.95188 * 3 2 1 33 33 H 1.09006 * 109.46603 * 173.95367 * 3 2 1 34 34 H 0.96997 * 120.00577 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.47420 * 306.04737 * 12 2 1 36 36 H 1.09005 * 109.47091 * 186.05222 * 12 2 1 37 37 H 0.96700 * 113.99588 * 59.99856 * 15 13 12 38 38 H 1.08993 * 109.47042 * 60.00113 * 16 13 12 39 39 H 1.09003 * 109.46902 * 299.99343 * 16 13 12 40 40 H 1.00904 * 110.99923 * 56.04649 * 17 16 13 41 41 H 1.09001 * 109.46739 * 60.00281 * 18 17 16 42 42 H 1.09000 * 109.47767 * 300.00540 * 18 17 16 43 43 H 1.08001 * 119.73929 * 359.97299 * 20 19 18 44 44 H 1.07997 * 119.66285 * 180.26094 * 21 20 19 45 45 H 1.07996 * 120.11576 * 179.78988 * 22 21 20 46 46 H 1.08001 * 125.03000 * 179.97438 * 26 24 23 47 47 H 1.07997 * 126.50401 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0470 -1.2985 5 1 1.0741 1.5113 -2.0486 6 6 2.0267 3.3494 -1.5286 7 7 1.7135 3.9392 -2.6616 8 14 2.9997 4.2762 -0.2310 9 1 4.4521 4.0638 -0.4557 10 1 2.6915 5.7260 -0.3229 11 1 2.6289 3.7758 1.1171 12 6 1.9954 -0.7659 1.1376 13 6 1.6315 -2.2425 0.9705 14 1 0.5532 -2.3388 0.8434 15 8 2.2956 -2.7696 -0.1798 16 6 2.0699 -3.0197 2.2134 17 7 1.7200 -4.4374 2.0531 18 6 2.1274 -5.2165 3.2299 19 6 1.7524 -6.6624 3.0296 20 6 0.6271 -7.1668 3.6186 21 6 0.2711 -8.4958 3.4358 22 6 1.0498 -9.3326 2.6665 23 6 2.2023 -8.8417 2.0621 24 7 3.1644 -9.4073 1.2557 25 1 3.1735 -10.3323 0.9640 26 6 4.1057 -8.4701 0.9271 27 6 3.7966 -7.2928 1.4930 28 6 2.5561 -7.4925 2.2465 29 1 -0.3634 0.4512 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3633 -1.0253 -0.0708 32 1 1.5610 1.9274 0.8308 33 1 3.0797 1.3444 0.1083 34 1 1.9880 4.8553 -2.8237 35 1 1.5610 -0.3871 2.0629 36 1 3.0797 -0.6610 1.1758 37 1 3.2602 -2.7166 -0.1357 38 1 1.5633 -2.6178 3.0907 39 1 3.1482 -2.9235 2.3404 40 1 2.1252 -4.8169 1.2105 41 1 1.6218 -4.8296 4.1146 42 1 3.2062 -5.1357 3.3635 43 1 0.0081 -6.5253 4.2284 44 1 -0.6234 -8.8788 3.9044 45 1 0.7662 -10.3660 2.5331 46 1 4.9695 -8.6509 0.3046 47 1 4.3566 -6.3732 1.4097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601970539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:05 Heat of formation + Delta-G solvation = 17.978291 kcal Electronic energy + Delta-G solvation = -25594.580825 eV Core-core repulsion = 21970.733454 eV Total energy + Delta-G solvation = -3623.847372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.47462 -38.46206 -37.50256 -36.01184 -34.97962 -32.47770 -32.28389 -30.30562 -29.56874 -29.02636 -27.64877 -26.35647 -24.75458 -22.98358 -22.19312 -21.98315 -21.14820 -20.60993 -20.07729 -17.88838 -16.97982 -16.66886 -16.15825 -16.01593 -15.58061 -15.18633 -14.93011 -14.84878 -14.47424 -14.34448 -14.08787 -13.94789 -13.56030 -13.37733 -13.02775 -12.80248 -12.62472 -12.32471 -12.25236 -11.99717 -11.75361 -11.67174 -11.55645 -11.16930 -11.02758 -10.93119 -10.75125 -10.51495 -10.25263 -10.01467 -9.92610 -9.53616 -9.20093 -8.54430 -8.49504 -8.43303 -7.91737 -7.28871 -6.02133 -3.99078 0.86631 1.43597 2.47437 2.85768 3.29075 3.36455 3.38097 3.58559 4.15428 4.43705 4.45124 4.57992 4.68791 4.72661 4.84966 4.91587 5.02564 5.10778 5.18093 5.25232 5.31189 5.32745 5.37079 5.41857 5.50980 5.61555 5.65137 5.70539 5.73930 5.86319 5.98343 6.16578 6.26036 6.28924 6.38275 6.43770 6.45005 6.56410 6.73306 6.87148 6.89735 6.95150 7.02947 7.23703 7.34701 7.61526 7.93703 7.95670 8.12491 8.69779 9.07930 9.59432 11.11079 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026199 B = 0.002128 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.473387 B =13154.145335 C =13493.882509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.521 5.521 3 C 0.162 3.838 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.022 3.978 13 C 0.114 3.886 14 H 0.105 0.895 15 O -0.544 6.544 16 C 0.027 3.973 17 N -0.677 5.677 18 C 0.099 3.901 19 C -0.031 4.031 20 C -0.129 4.129 21 C -0.098 4.098 22 C -0.133 4.133 23 C 0.093 3.907 24 N -0.598 5.598 25 H 0.414 0.586 26 C 0.050 3.950 27 C -0.203 4.203 28 C -0.100 4.100 29 H 0.009 0.991 30 H 0.080 0.920 31 H 0.051 0.949 32 H -0.013 1.013 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.030 0.970 36 H 0.068 0.932 37 H 0.365 0.635 38 H 0.078 0.922 39 H 0.031 0.969 40 H 0.351 0.649 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.117 0.883 46 H 0.170 0.830 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 -28.336 14.118 31.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.244 5.244 3 C 0.035 3.965 4 C -0.545 4.545 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.540 5.540 8 Si 0.703 3.297 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.107 4.107 13 C 0.054 3.946 14 H 0.123 0.877 15 O -0.347 6.347 16 C -0.103 4.103 17 N -0.309 5.309 18 C -0.029 4.029 19 C -0.032 4.032 20 C -0.149 4.149 21 C -0.117 4.117 22 C -0.154 4.154 23 C -0.014 4.014 24 N -0.201 5.201 25 H 0.250 0.750 26 C -0.076 4.076 27 C -0.228 4.228 28 C -0.105 4.105 29 H 0.028 0.972 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.004 0.996 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.211 0.789 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.171 0.829 41 H 0.096 0.904 42 H 0.055 0.945 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.135 0.865 46 H 0.187 0.813 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.077 -28.495 13.551 31.621 hybrid contribution 1.867 0.708 1.322 2.395 sum 3.943 -27.787 14.874 31.763 Atomic orbital electron populations 1.22302 0.88239 1.00165 1.00687 1.61853 1.07392 1.15949 1.39216 1.20195 0.94735 0.84272 0.97259 1.21048 1.35459 0.97119 1.00857 0.90030 1.24913 0.95892 0.97373 0.95292 1.69896 1.46982 1.13250 1.23856 0.86864 0.80858 0.79295 0.82719 1.20199 1.21217 1.19388 1.22774 1.00288 0.94342 0.93340 1.21981 0.98476 0.90322 0.83777 0.87688 1.86642 1.22680 1.83788 1.41607 1.22700 0.98433 0.89195 0.99964 1.60415 1.64193 1.01508 1.04823 1.20837 0.98100 0.89461 0.94536 1.18935 0.94098 0.94214 0.95955 1.20537 0.96860 0.95453 1.02064 1.20794 0.99044 0.93541 0.98312 1.20000 0.94125 0.99950 1.01346 1.18232 0.92761 0.93247 0.97139 1.41784 1.21587 1.12204 1.44559 0.74957 1.21812 0.94881 0.88872 1.02011 1.21670 0.98274 0.98238 1.04608 1.19041 0.97027 0.92737 1.01733 0.97233 0.90128 0.92982 0.99575 0.96052 0.92705 0.95226 0.91333 0.78889 0.90362 0.95092 0.82913 0.90396 0.94479 0.85914 0.85753 0.86482 0.81318 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.14 60.06 0.55 1.24 16 2 N -0.52 -11.12 4.70 -244.36 -1.15 -12.27 16 3 C 0.16 3.99 3.79 -4.97 -0.02 3.97 16 4 C -0.51 -14.67 9.01 -34.44 -0.31 -14.98 16 5 H 0.08 2.58 7.37 -52.49 -0.39 2.20 16 6 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 8 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 12 C 0.02 0.37 4.59 -3.83 -0.02 0.35 16 13 C 0.11 1.63 3.19 -26.73 -0.09 1.54 16 14 H 0.11 1.65 6.33 -51.93 -0.33 1.32 16 15 O -0.54 -8.26 12.62 -35.23 -0.44 -8.71 16 16 C 0.03 0.31 5.39 -3.82 -0.02 0.29 16 17 N -0.68 -7.77 6.49 -115.06 -0.75 -8.51 16 18 C 0.10 1.00 5.73 -4.98 -0.03 0.97 16 19 C -0.03 -0.33 5.39 -104.69 -0.56 -0.89 16 20 C -0.13 -1.26 9.60 -39.95 -0.38 -1.65 16 21 C -0.10 -0.85 10.01 -39.54 -0.40 -1.25 16 22 C -0.13 -1.16 10.08 -39.43 -0.40 -1.56 16 23 C 0.09 0.91 7.28 -83.99 -0.61 0.30 16 24 N -0.60 -4.33 6.07 -10.65 -0.06 -4.40 16 25 H 0.41 1.71 8.96 -40.82 -0.37 1.35 16 26 C 0.05 0.36 11.81 -16.73 -0.20 0.17 16 27 C -0.20 -1.88 10.94 -37.67 -0.41 -2.29 16 28 C -0.10 -1.08 6.16 -105.14 -0.65 -1.73 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 1.80 6.76 -51.93 -0.35 1.44 16 31 H 0.05 0.92 6.37 -51.92 -0.33 0.59 16 32 H -0.01 -0.33 7.18 -51.93 -0.37 -0.71 16 33 H 0.02 0.52 7.36 -51.93 -0.38 0.14 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.07 1.09 7.93 -51.93 -0.41 0.67 16 37 H 0.37 4.38 9.05 45.56 0.41 4.79 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.35 4.27 8.11 -39.29 -0.32 3.95 16 41 H 0.08 0.73 7.98 -51.93 -0.41 0.31 16 42 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.12 1.04 8.01 -52.49 -0.42 0.62 16 44 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 47 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -34.39 382.30 -10.82 -45.21 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.64 Total: 6.73 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -3.64 Total: -13.67 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -1.19 Total: -52.34 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.44 Total: -8.71 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.39 -10.82 -45.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601970539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.185 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds