Wall clock time and date at job start Tue Mar 31 2020 11:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99668 * 2 1 4 4 C 1.50699 * 109.46727 * 293.94579 * 3 2 1 5 5 H 1.07994 * 120.00404 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99547 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99974 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 120.00267 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47379 * 89.99549 * 8 6 4 10 10 H 1.48504 * 109.47106 * 209.99404 * 8 6 4 11 11 H 1.48500 * 109.47213 * 329.99308 * 8 6 4 12 12 C 1.46899 * 110.99753 * 123.95013 * 2 1 3 13 13 C 1.52998 * 109.47362 * 66.04994 * 12 2 1 14 14 H 1.08998 * 109.46732 * 304.99985 * 13 12 2 15 15 O 1.42899 * 109.47279 * 64.99636 * 13 12 2 16 16 C 1.53003 * 109.47202 * 185.00011 * 13 12 2 17 17 N 1.46903 * 109.47090 * 179.97438 * 16 13 12 18 18 C 1.46893 * 110.99924 * 179.97438 * 17 16 13 19 19 C 1.50706 * 109.47176 * 179.97438 * 18 17 16 20 20 C 1.36660 * 120.11738 * 259.73229 * 19 18 17 21 21 C 1.38795 * 120.52206 * 179.76048 * 20 19 18 22 22 C 1.37784 * 120.66976 * 0.49327 * 21 20 19 23 23 C 1.39085 * 119.77679 * 359.76843 * 22 21 20 24 24 N 1.37691 * 133.51621 * 180.02562 * 23 22 21 25 25 H 0.97000 * 125.06062 * 359.97219 * 24 23 22 26 26 C 1.36832 * 109.87691 * 179.97438 * 24 23 22 27 27 C 1.34233 * 109.93939 * 359.97438 * 26 24 23 28 28 C 1.39588 * 120.11685 * 80.00081 * 19 18 17 29 29 H 1.08999 * 109.47704 * 296.04778 * 1 2 3 30 30 H 1.08998 * 109.47140 * 56.05291 * 1 2 3 31 31 H 1.09008 * 109.46978 * 176.04825 * 1 2 3 32 32 H 1.08995 * 109.47593 * 53.95188 * 3 2 1 33 33 H 1.09006 * 109.46603 * 173.95367 * 3 2 1 34 34 H 0.96997 * 120.00577 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.47420 * 306.04737 * 12 2 1 36 36 H 1.09005 * 109.47091 * 186.05222 * 12 2 1 37 37 H 0.96700 * 113.99588 * 59.99856 * 15 13 12 38 38 H 1.08993 * 109.47042 * 60.00113 * 16 13 12 39 39 H 1.09003 * 109.46902 * 299.99343 * 16 13 12 40 40 H 1.00904 * 110.99923 * 56.04649 * 17 16 13 41 41 H 1.09001 * 109.46739 * 60.00281 * 18 17 16 42 42 H 1.09000 * 109.47767 * 300.00540 * 18 17 16 43 43 H 1.08001 * 119.73929 * 359.97299 * 20 19 18 44 44 H 1.07997 * 119.66285 * 180.26094 * 21 20 19 45 45 H 1.07996 * 120.11576 * 179.78988 * 22 21 20 46 46 H 1.08001 * 125.03000 * 179.97438 * 26 24 23 47 47 H 1.07997 * 126.50401 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0470 -1.2985 5 1 1.0741 1.5113 -2.0486 6 6 2.0267 3.3494 -1.5286 7 7 1.7135 3.9392 -2.6616 8 14 2.9997 4.2762 -0.2310 9 1 4.4521 4.0638 -0.4557 10 1 2.6915 5.7260 -0.3229 11 1 2.6289 3.7758 1.1171 12 6 1.9954 -0.7659 1.1376 13 6 1.6315 -2.2425 0.9705 14 1 0.5532 -2.3388 0.8434 15 8 2.2956 -2.7696 -0.1798 16 6 2.0699 -3.0197 2.2134 17 7 1.7200 -4.4374 2.0531 18 6 2.1274 -5.2165 3.2299 19 6 1.7524 -6.6624 3.0296 20 6 0.6271 -7.1668 3.6186 21 6 0.2711 -8.4958 3.4358 22 6 1.0498 -9.3326 2.6665 23 6 2.2023 -8.8417 2.0621 24 7 3.1644 -9.4073 1.2557 25 1 3.1735 -10.3323 0.9640 26 6 4.1057 -8.4701 0.9271 27 6 3.7966 -7.2928 1.4930 28 6 2.5561 -7.4925 2.2465 29 1 -0.3634 0.4512 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3633 -1.0253 -0.0708 32 1 1.5610 1.9274 0.8308 33 1 3.0797 1.3444 0.1083 34 1 1.9880 4.8553 -2.8237 35 1 1.5610 -0.3871 2.0629 36 1 3.0797 -0.6610 1.1758 37 1 3.2602 -2.7166 -0.1357 38 1 1.5633 -2.6178 3.0907 39 1 3.1482 -2.9235 2.3404 40 1 2.1252 -4.8169 1.2105 41 1 1.6218 -4.8296 4.1146 42 1 3.2062 -5.1357 3.3635 43 1 0.0081 -6.5253 4.2284 44 1 -0.6234 -8.8788 3.9044 45 1 0.7662 -10.3660 2.5331 46 1 4.9695 -8.6509 0.3046 47 1 4.3566 -6.3732 1.4097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601970539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:04 Heat of formation + Delta-G solvation = -9.159743 kcal Electronic energy + Delta-G solvation = -25595.757619 eV Core-core repulsion = 21970.733454 eV Total energy + Delta-G solvation = -3625.024165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.08522 -39.65483 -38.29000 -37.35281 -35.97283 -34.59383 -33.07935 -31.36405 -30.47353 -29.88628 -29.28368 -27.60521 -26.00823 -24.28350 -22.87627 -22.64247 -22.43627 -21.73828 -21.24102 -19.02414 -18.53075 -17.60385 -17.21853 -16.96119 -16.58291 -16.35288 -16.05435 -16.01801 -15.76196 -15.39280 -15.31155 -14.97097 -14.59315 -14.56178 -14.22153 -13.96179 -13.78616 -13.48968 -13.35607 -13.14108 -12.97939 -12.72679 -12.49351 -12.41060 -12.38900 -12.33626 -12.28242 -11.90545 -11.71006 -11.60910 -11.48921 -10.77839 -10.75633 -10.55227 -9.32882 -9.09360 -8.95168 -8.55089 -8.27116 -6.30825 0.21459 0.75214 1.34941 1.37059 1.47644 1.86662 2.33354 2.35164 2.81599 3.05322 3.12197 3.53981 3.71368 3.79038 4.01501 4.05226 4.09500 4.18037 4.29471 4.32329 4.40099 4.46487 4.46769 4.55720 4.62924 4.66999 4.68163 4.72043 4.81582 4.83142 4.91114 5.00860 5.03322 5.09859 5.13519 5.22800 5.28687 5.53578 5.60519 5.78059 5.82022 5.88843 5.98884 6.06812 6.29630 6.36235 6.44286 6.68042 6.75828 6.76977 6.99522 7.32531 8.89765 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026199 B = 0.002128 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.473387 B =13154.145335 C =13493.882509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.172 3.828 4 C -0.517 4.517 5 H 0.034 0.966 6 C 0.004 3.996 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.263 1.263 10 H -0.282 1.282 11 H -0.250 1.250 12 C 0.023 3.977 13 C 0.125 3.875 14 H 0.089 0.911 15 O -0.563 6.563 16 C 0.039 3.961 17 N -0.685 5.685 18 C 0.106 3.894 19 C -0.053 4.053 20 C -0.141 4.141 21 C -0.108 4.108 22 C -0.136 4.136 23 C 0.071 3.929 24 N -0.590 5.590 25 H 0.428 0.572 26 C 0.063 3.937 27 C -0.235 4.235 28 C -0.124 4.124 29 H 0.022 0.978 30 H 0.045 0.955 31 H 0.073 0.927 32 H -0.013 1.013 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.379 0.621 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.346 0.654 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.130 0.870 44 H 0.146 0.854 45 H 0.139 0.861 46 H 0.204 0.796 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 -29.716 16.274 34.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.265 5.265 3 C 0.045 3.955 4 C -0.555 4.555 5 H 0.052 0.948 6 C -0.193 4.193 7 N -0.590 5.590 8 Si 0.775 3.225 9 H -0.188 1.188 10 H -0.208 1.208 11 H -0.174 1.174 12 C -0.106 4.106 13 C 0.065 3.935 14 H 0.107 0.893 15 O -0.369 6.369 16 C -0.091 4.091 17 N -0.317 5.317 18 C -0.022 4.022 19 C -0.054 4.054 20 C -0.161 4.161 21 C -0.127 4.127 22 C -0.157 4.157 23 C -0.036 4.036 24 N -0.194 5.194 25 H 0.268 0.732 26 C -0.064 4.064 27 C -0.260 4.260 28 C -0.129 4.129 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.005 0.995 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.227 0.773 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.165 0.835 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.148 0.852 44 H 0.164 0.836 45 H 0.157 0.843 46 H 0.221 0.779 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.399 -29.925 15.722 33.974 hybrid contribution 1.410 1.007 0.555 1.819 sum 4.809 -28.918 16.277 33.530 Atomic orbital electron populations 1.22203 0.87892 1.00994 0.99691 1.61735 1.07972 1.14453 1.42323 1.19955 0.95135 0.85880 0.94556 1.21281 1.34850 0.97524 1.01851 0.94772 1.25916 0.97132 0.98441 0.97836 1.70064 1.48669 1.13900 1.26412 0.85650 0.79380 0.77513 0.79967 1.18808 1.20796 1.17417 1.22880 1.00809 0.94904 0.91971 1.21818 0.97590 0.89245 0.84831 0.89304 1.86606 1.24047 1.83820 1.42381 1.22533 0.99315 0.88830 0.98439 1.60406 1.64496 1.01613 1.05163 1.20791 0.98222 0.89226 0.93985 1.19092 0.94827 0.94543 0.96920 1.20777 0.96846 0.96271 1.02181 1.21103 0.99884 0.93253 0.98446 1.20330 0.93657 1.01067 1.00654 1.18520 0.93686 0.93397 0.98012 1.41844 1.20878 1.12989 1.43727 0.73241 1.22357 0.95108 0.88098 1.00814 1.21860 0.98613 0.99418 1.06069 1.19372 0.97791 0.93501 1.02218 0.96000 0.93630 0.90862 0.99488 0.95196 0.92443 0.93872 0.90241 0.77320 0.89495 0.93646 0.83513 0.89814 0.94275 0.85165 0.83588 0.84270 0.77938 0.83687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.14 127.69 1.17 2.79 16 2 N -0.54 -22.80 4.70 -927.03 -4.36 -27.16 16 3 C 0.17 8.35 3.79 85.56 0.32 8.67 16 4 C -0.52 -30.68 9.01 25.60 0.23 -30.44 16 5 H 0.03 2.29 7.37 -2.91 -0.02 2.26 16 6 C 0.00 0.22 5.47 84.65 0.46 0.68 16 7 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 8 Si 0.95 44.33 27.47 68.60 1.88 46.21 16 9 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 12 C 0.02 0.72 4.59 86.30 0.40 1.12 16 13 C 0.13 3.37 3.19 30.59 0.10 3.46 16 14 H 0.09 2.69 6.33 -2.39 -0.02 2.68 16 15 O -0.56 -16.53 12.62 -148.98 -1.88 -18.42 16 16 C 0.04 0.80 5.39 86.30 0.47 1.27 16 17 N -0.68 -14.94 6.49 -517.93 -3.36 -18.31 16 18 C 0.11 2.04 5.73 85.56 0.49 2.53 16 19 C -0.05 -1.11 5.39 -19.91 -0.11 -1.21 16 20 C -0.14 -2.67 9.60 22.03 0.21 -2.46 16 21 C -0.11 -1.75 10.01 22.30 0.22 -1.53 16 22 C -0.14 -2.20 10.08 22.37 0.23 -1.97 16 23 C 0.07 1.32 7.28 39.03 0.28 1.60 16 24 N -0.59 -7.53 6.07 -187.61 -1.14 -8.66 16 25 H 0.43 2.65 8.96 -92.71 -0.83 1.82 16 26 C 0.06 0.80 11.81 83.00 0.98 1.78 16 27 C -0.23 -4.17 10.94 23.51 0.26 -3.92 16 28 C -0.12 -2.61 6.16 -20.20 -0.12 -2.73 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.04 2.11 6.76 -2.39 -0.02 2.10 16 31 H 0.07 2.59 6.37 -2.38 -0.02 2.57 16 32 H -0.01 -0.60 7.18 -2.39 -0.02 -0.62 16 33 H 0.03 1.40 7.36 -2.38 -0.02 1.39 16 34 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 35 H 0.04 1.25 8.12 -2.38 -0.02 1.23 16 36 H 0.08 2.30 7.93 -2.38 -0.02 2.28 16 37 H 0.38 8.57 9.05 -74.06 -0.67 7.90 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.35 8.19 8.11 -89.69 -0.73 7.46 16 41 H 0.08 1.46 7.98 -2.39 -0.02 1.45 16 42 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.13 2.11 8.01 -2.91 -0.02 2.09 16 44 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 46 H 0.20 0.98 8.06 -2.91 -0.02 0.95 16 47 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -76.10 382.30 -4.26 -80.36 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: -1.29 Total: 26.51 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 5.59 Total: -20.38 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -8.56 Total: -114.29 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -1.88 Total: -18.42 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -76.10 -4.26 -80.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601970539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.202 kcal (2) G-P(sol) polarization free energy of solvation -76.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds