Wall clock time and date at job start Tue Mar 31 2020 11:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46907 * 111.00054 * 2 1 4 4 C 1.46903 * 110.99981 * 123.95247 * 2 1 3 5 5 C 1.53000 * 109.47133 * 73.61424 * 4 2 1 6 6 C 1.50697 * 115.55031 * 56.69232 * 5 4 2 7 7 O 1.21281 * 120.00157 * 247.17195 * 6 5 4 8 8 N 1.34781 * 119.99582 * 67.17467 * 6 5 4 9 9 C 1.46496 * 120.00569 * 355.35358 * 8 6 5 10 10 C 1.50699 * 109.47239 * 263.96872 * 9 8 6 11 11 H 1.08001 * 119.99714 * 4.92588 * 10 9 8 12 12 C 1.37872 * 119.99864 * 184.92239 * 10 9 8 13 13 N 1.31516 * 120.00278 * 4.92971 * 12 10 9 14 14 Si 1.86797 * 119.99832 * 184.92298 * 12 10 9 15 15 H 1.48503 * 109.47020 * 60.00585 * 14 12 10 16 16 H 1.48501 * 109.47564 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47512 * 300.00520 * 14 12 10 18 18 C 1.46503 * 119.99494 * 175.35368 * 8 6 5 19 19 C 1.50705 * 109.47152 * 90.00092 * 18 8 6 20 20 C 1.38667 * 120.41675 * 89.99619 * 19 18 8 21 21 C 1.38633 * 118.41903 * 179.97438 * 20 19 18 22 22 C 1.38232 * 119.15932 * 0.25840 * 21 20 19 23 23 N 1.31851 * 120.76147 * 359.49498 * 22 21 20 24 24 C 1.31887 * 121.72963 * 0.49471 * 23 22 21 25 25 C 1.52999 * 117.49735 * 202.36276 * 5 4 2 26 26 C 1.52994 * 117.49425 * 271.02233 * 5 4 2 27 27 H 1.08997 * 109.47217 * 299.88984 * 1 2 3 28 28 H 1.08998 * 109.47267 * 59.89028 * 1 2 3 29 29 H 1.09003 * 109.47244 * 179.89153 * 1 2 3 30 30 H 1.09000 * 109.46788 * 188.93342 * 3 2 1 31 31 H 1.08999 * 109.46791 * 308.93200 * 3 2 1 32 32 H 1.08994 * 109.47123 * 68.93228 * 3 2 1 33 33 H 1.09001 * 109.47300 * 313.61130 * 4 2 1 34 34 H 1.09005 * 109.46958 * 193.61454 * 4 2 1 35 35 H 1.08999 * 109.46981 * 23.97102 * 9 8 6 36 36 H 1.08996 * 109.46936 * 143.96504 * 9 8 6 37 37 H 0.96995 * 119.99853 * 184.99991 * 13 12 10 38 38 H 1.08998 * 109.47406 * 329.99974 * 18 8 6 39 39 H 1.08999 * 109.47020 * 210.00159 * 18 8 6 40 40 H 1.07995 * 120.79079 * 0.02562 * 20 19 18 41 41 H 1.08001 * 120.41849 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.61623 * 179.74606 * 22 21 20 43 43 H 1.07997 * 119.61899 * 179.75698 * 24 23 22 44 44 H 1.08992 * 117.49993 * 215.00438 * 25 5 4 45 45 H 1.09008 * 117.49762 * 0.02562 * 25 5 4 46 46 H 1.08993 * 117.50459 * 359.97438 * 26 5 4 47 47 H 1.09001 * 117.49749 * 144.97705 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.7982 -2.2613 0.8806 6 6 2.4144 -2.7893 -0.3892 7 8 1.7040 -3.1848 -1.2892 8 7 3.7550 -2.8221 -0.5247 9 6 4.6109 -2.2516 0.5183 10 6 4.9899 -0.8424 0.1420 11 1 4.5660 -0.3866 -0.7406 12 6 5.8777 -0.1350 0.9246 13 7 6.4679 -0.7210 1.9434 14 14 6.2423 1.6557 0.5377 15 1 4.9867 2.4448 0.6168 16 1 7.2226 2.1848 1.5197 17 1 6.8078 1.7612 -0.8314 18 6 4.3561 -3.4284 -1.7153 19 6 4.5265 -2.3779 -2.7824 20 6 5.6959 -1.6365 -2.8574 21 6 5.8086 -0.6814 -3.8558 22 6 4.7569 -0.4974 -4.7338 23 7 3.6613 -1.2243 -4.6354 24 6 3.5194 -2.1418 -3.6987 25 6 1.7790 -3.1904 2.0960 26 6 0.4816 -2.8896 1.3414 27 1 -0.3633 0.5121 0.8909 28 1 -0.3634 0.5155 -0.8890 29 1 -0.3634 -1.0277 -0.0019 30 1 3.0734 1.3468 -0.1596 31 1 1.5227 1.9421 -0.7994 32 1 1.7807 1.8430 0.9589 33 1 1.4638 -0.4801 2.0453 34 1 3.0581 -0.5548 1.2572 35 1 4.0720 -2.2422 1.4657 36 1 5.5125 -2.8557 0.6191 37 1 7.0359 -0.2054 2.5369 38 1 3.7069 -4.2214 -2.0864 39 1 5.3295 -3.8462 -1.4581 40 1 6.5000 -1.7998 -2.1552 41 1 6.7050 -0.0853 -3.9437 42 1 4.8352 0.2475 -5.5119 43 1 2.6056 -2.7151 -3.6470 44 1 2.2120 -4.1836 1.9772 45 1 1.9063 -2.7363 3.0788 46 1 -0.2440 -2.2379 1.8280 47 1 0.0608 -3.6847 0.7259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602085376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:24 Heat of formation + Delta-G solvation = 23.965911 kcal Electronic energy + Delta-G solvation = -28928.668292 eV Core-core repulsion = 25305.080563 eV Total energy + Delta-G solvation = -3623.587729 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.46390 -40.67420 -38.51229 -36.91703 -36.42812 -34.62299 -33.36457 -32.46223 -29.47894 -28.71869 -28.39098 -27.48750 -24.96409 -24.33709 -23.95425 -23.30263 -22.94947 -22.13049 -19.35043 -18.47927 -17.91928 -17.66897 -17.14195 -16.93041 -16.57480 -16.34564 -16.10834 -15.97362 -15.61098 -15.14542 -15.06483 -14.61749 -14.36647 -14.10722 -13.96351 -13.83073 -13.62564 -13.30998 -13.26283 -13.12696 -12.85191 -12.77567 -12.70338 -12.53998 -12.45028 -12.34574 -12.18124 -11.95771 -11.61823 -11.23343 -10.88400 -10.64796 -10.51203 -10.40031 -10.31745 -9.81555 -9.32983 -9.13746 -8.08945 -6.13969 0.26748 0.49900 1.40151 1.45231 1.48923 1.88752 2.38621 2.49253 2.78472 3.07932 3.21869 3.22858 3.64097 3.75676 3.89229 4.00713 4.02118 4.04328 4.19550 4.22860 4.26779 4.32518 4.43385 4.53266 4.58851 4.62886 4.70937 4.73588 4.81599 4.85273 4.93850 4.95932 4.98834 5.03542 5.04777 5.06258 5.19691 5.25101 5.34099 5.44136 5.52634 5.82321 5.90574 5.94636 6.17597 6.23027 6.30569 6.73764 6.98504 7.12085 7.45843 7.57877 8.96297 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009245 B = 0.007814 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.865273 B = 3582.480475 C = 4662.521015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.552 5.552 3 C 0.035 3.965 4 C 0.090 3.910 5 C -0.149 4.149 6 C 0.567 3.433 7 O -0.586 6.586 8 N -0.590 5.590 9 C 0.251 3.749 10 C -0.494 4.494 11 H 0.051 0.949 12 C 0.034 3.966 13 N -0.917 5.917 14 Si 0.918 3.082 15 H -0.271 1.271 16 H -0.293 1.293 17 H -0.274 1.274 18 C 0.164 3.836 19 C -0.143 4.143 20 C -0.044 4.044 21 C -0.182 4.182 22 C 0.086 3.914 23 N -0.514 5.514 24 C 0.107 3.893 25 C -0.148 4.148 26 C -0.139 4.139 27 H 0.032 0.968 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.039 0.961 36 H 0.018 0.982 37 H 0.262 0.738 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.132 0.868 41 H 0.151 0.849 42 H 0.178 0.822 43 H 0.142 0.858 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 -0.821 -2.070 5.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.275 5.275 3 C -0.113 4.113 4 C -0.038 4.038 5 C -0.152 4.152 6 C 0.356 3.644 7 O -0.468 6.468 8 N -0.318 5.318 9 C 0.130 3.870 10 C -0.533 4.533 11 H 0.069 0.931 12 C -0.165 4.165 13 N -0.558 5.558 14 Si 0.746 3.254 15 H -0.196 1.196 16 H -0.219 1.219 17 H -0.199 1.199 18 C 0.041 3.959 19 C -0.146 4.146 20 C -0.070 4.070 21 C -0.201 4.201 22 C -0.071 4.071 23 N -0.223 5.223 24 C -0.050 4.050 25 C -0.186 4.186 26 C -0.176 4.176 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.056 0.944 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.150 0.850 41 H 0.169 0.831 42 H 0.195 0.805 43 H 0.159 0.841 44 H 0.115 0.885 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.879 -1.106 -3.447 6.904 hybrid contribution 1.012 1.478 1.351 2.243 sum -4.866 0.372 -2.096 5.312 Atomic orbital electron populations 1.22423 0.86892 1.02242 1.00336 1.61680 1.08375 1.13564 1.43919 1.22274 1.00288 0.88771 0.99970 1.21826 1.02683 0.88911 0.90338 1.21193 1.03771 0.95391 0.94865 1.19499 0.81627 0.75905 0.87347 1.90531 1.61991 1.51227 1.43042 1.48086 1.05738 1.57432 1.20585 1.19230 0.89042 0.92671 0.86062 1.21365 1.23259 0.98687 1.10009 0.93106 1.25269 0.95297 1.00159 0.95816 1.69982 1.32142 1.36442 1.17211 0.86232 0.78043 0.83212 0.77940 1.19606 1.21883 1.19905 1.20185 0.99402 0.92678 0.83647 1.21164 0.95205 1.00583 0.97619 1.21607 0.97180 0.92955 0.95294 1.22340 1.01546 0.99685 0.96549 1.23129 0.88486 0.97111 0.98418 1.67650 1.25201 1.06577 1.22877 1.22576 0.97633 0.94363 0.90385 1.23099 1.00677 0.99461 0.95320 1.23061 0.90223 1.02596 1.01758 0.94938 0.91878 0.91254 0.93250 0.91207 0.95406 0.94071 0.88393 0.94355 0.96387 0.92874 0.89936 0.88955 0.84972 0.83105 0.80507 0.84092 0.88507 0.86855 0.86761 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.33 127.69 1.19 2.05 16 2 N -0.55 -19.81 4.70 -948.85 -4.46 -24.27 16 3 C 0.04 1.22 9.54 127.69 1.22 2.44 16 4 C 0.09 3.23 4.45 86.30 0.38 3.62 16 5 C -0.15 -5.12 0.65 -52.93 -0.03 -5.15 16 6 C 0.57 22.63 6.67 87.66 0.58 23.22 16 7 O -0.59 -25.60 15.65 -3.03 -0.05 -25.65 16 8 N -0.59 -23.41 2.45 -830.51 -2.04 -25.45 16 9 C 0.25 10.89 4.72 85.63 0.40 11.29 16 10 C -0.49 -22.94 6.05 25.60 0.15 -22.78 16 11 H 0.05 2.54 6.88 -2.91 -0.02 2.52 16 12 C 0.03 1.66 5.45 84.65 0.46 2.12 16 13 N -0.92 -46.96 13.28 21.45 0.28 -46.68 16 14 Si 0.92 39.62 29.35 68.60 2.01 41.64 16 15 H -0.27 -11.46 6.88 99.48 0.68 -10.77 16 16 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 C 0.16 5.91 5.56 85.63 0.48 6.38 16 19 C -0.14 -5.26 5.08 -19.77 -0.10 -5.36 16 20 C -0.04 -1.55 8.29 22.47 0.19 -1.36 16 21 C -0.18 -5.69 10.11 22.36 0.23 -5.47 16 22 C 0.09 2.69 11.18 84.69 0.95 3.64 16 23 N -0.51 -19.01 10.36 -195.84 -2.03 -21.04 16 24 C 0.11 4.10 10.77 84.67 0.91 5.01 16 25 C -0.15 -4.22 9.15 30.62 0.28 -3.94 16 26 C -0.14 -3.87 8.17 30.62 0.25 -3.62 16 27 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 29 H 0.07 2.08 5.91 -2.39 -0.01 2.06 16 30 H 0.05 1.99 7.57 -2.39 -0.02 1.97 16 31 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 32 H 0.03 0.88 8.13 -2.39 -0.02 0.86 16 33 H 0.04 1.33 7.99 -2.39 -0.02 1.31 16 34 H 0.10 4.16 4.22 -2.38 -0.01 4.15 16 35 H 0.04 1.71 5.20 -2.39 -0.01 1.70 16 36 H 0.02 0.84 7.97 -2.39 -0.02 0.83 16 37 H 0.26 13.10 8.32 -92.71 -0.77 12.33 16 38 H 0.08 2.87 7.44 -2.39 -0.02 2.85 16 39 H 0.09 3.03 7.91 -2.39 -0.02 3.01 16 40 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 41 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 42 H 0.18 4.23 8.06 -2.91 -0.02 4.21 16 43 H 0.14 5.63 7.42 -2.91 -0.02 5.61 16 44 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 45 H 0.11 2.91 8.14 -2.38 -0.02 2.89 16 46 H 0.11 2.68 7.88 -2.39 -0.02 2.66 16 47 H 0.09 2.72 8.03 -2.39 -0.02 2.70 16 Total: -1.00 -57.67 377.75 2.20 -55.47 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.93 Total: 33.89 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 7.54 Total: 12.09 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -8.24 Total: -117.44 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.05 Total: -25.65 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.01 Total: 41.64 kcal Total: -57.67 2.20 -55.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602085376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.437 kcal (2) G-P(sol) polarization free energy of solvation -57.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds