Wall clock time and date at job start Tue Mar 31 2020 11:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46853 * 110.99880 * 2 1 4 4 C 1.53039 * 109.52333 * 174.16054 * 3 2 1 5 5 C 1.53126 * 109.27459 * 59.17626 * 4 3 2 6 6 C 1.53110 * 109.16411 * 302.34644 * 5 4 3 7 7 C 1.46840 * 111.00067 * 235.78919 * 2 1 3 8 8 H 1.09005 * 109.45933 * 65.83281 * 7 2 1 9 9 C 1.50703 * 109.46279 * 305.85797 * 7 2 1 10 10 O 1.21280 * 119.99714 * 331.87248 * 9 7 2 11 11 N 1.34772 * 120.00169 * 151.87032 * 9 7 2 12 12 C 1.46508 * 120.00094 * 3.06600 * 11 9 7 13 13 C 1.50700 * 109.46895 * 239.10903 * 12 11 9 14 14 H 1.07997 * 119.99718 * 239.58287 * 13 12 11 15 15 C 1.37877 * 120.00201 * 59.58517 * 13 12 11 16 16 N 1.31515 * 120.00133 * 0.63557 * 15 13 12 17 17 Si 1.86795 * 119.99994 * 180.63895 * 15 13 12 18 18 H 1.48502 * 109.47301 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.47116 * 300.00009 * 17 15 13 20 20 H 1.48507 * 109.47438 * 59.99655 * 17 15 13 21 21 C 1.46497 * 120.00156 * 183.05980 * 11 9 7 22 22 C 1.50699 * 109.47137 * 274.08338 * 21 11 9 23 23 C 1.38681 * 120.41607 * 95.36978 * 22 21 11 24 24 C 1.38625 * 118.41745 * 179.97438 * 23 22 21 25 25 C 1.38229 * 119.16385 * 0.02562 * 24 23 22 26 26 N 1.31856 * 120.76370 * 359.97438 * 25 24 23 27 27 C 1.31885 * 121.72467 * 359.70117 * 26 25 24 28 28 H 1.08996 * 109.47151 * 184.21233 * 1 2 3 29 29 H 1.09005 * 109.46907 * 304.21429 * 1 2 3 30 30 H 1.08998 * 109.46956 * 64.20551 * 1 2 3 31 31 H 1.08999 * 109.46127 * 294.17441 * 3 2 1 32 32 H 1.08999 * 109.46090 * 54.14391 * 3 2 1 33 33 H 1.08991 * 109.50364 * 179.11730 * 4 3 2 34 34 H 1.08997 * 109.50266 * 299.24032 * 4 3 2 35 35 H 1.08998 * 109.52010 * 62.25555 * 5 4 3 36 36 H 1.09005 * 109.51622 * 182.37734 * 5 4 3 37 37 H 1.09008 * 109.50501 * 297.71697 * 6 5 4 38 38 H 1.09000 * 109.50402 * 177.59634 * 6 5 4 39 39 H 1.08997 * 109.47052 * 119.10277 * 12 11 9 40 40 H 1.09005 * 109.46890 * 359.10641 * 12 11 9 41 41 H 0.97008 * 119.99888 * 354.55297 * 16 15 13 42 42 H 1.08997 * 109.46844 * 34.08147 * 21 11 9 43 43 H 1.08999 * 109.47233 * 154.08734 * 21 11 9 44 44 H 1.07995 * 120.78971 * 359.97438 * 23 22 21 45 45 H 1.08004 * 120.41618 * 179.97438 * 24 23 22 46 46 H 1.07999 * 119.61424 * 180.02562 * 25 24 23 47 47 H 1.07998 * 119.61663 * 180.30873 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5370 -1.0144 6 6 3.5181 -0.8714 -1.0209 7 6 1.9953 -0.7708 -1.1337 8 1 1.7326 -0.2707 -2.0660 9 6 1.3982 -2.1544 -1.1205 10 8 1.0508 -2.6550 -0.0719 11 7 1.2501 -2.8355 -2.2741 12 6 1.7309 -2.2588 -3.5321 13 6 0.5797 -2.1243 -4.4953 14 1 0.6097 -2.6339 -5.4470 15 6 -0.5116 -1.3506 -4.1616 16 7 -0.5425 -0.7198 -3.0080 17 14 -1.9463 -1.1983 -5.3481 18 1 -2.9856 -0.3171 -4.7575 19 1 -1.4705 -0.6145 -6.6279 20 1 -2.5238 -2.5428 -5.6018 21 6 0.6086 -4.1525 -2.2700 22 6 1.6374 -5.2114 -1.9679 23 6 1.8126 -5.6704 -0.6710 24 6 2.7703 -6.6457 -0.4401 25 6 3.5139 -7.1245 -1.5024 26 7 3.3201 -6.6646 -2.7229 27 6 2.4137 -5.7418 -2.9805 28 1 -0.3633 -1.0248 0.0755 29 1 -0.3633 0.5779 0.8499 30 1 -0.3633 0.4472 -0.9253 31 1 1.7325 1.8608 -0.9376 32 1 1.5634 1.9257 0.8330 33 1 3.9099 2.3512 0.1310 34 1 3.7814 0.8568 1.0906 35 1 3.8887 1.0355 -1.9560 36 1 5.1999 0.4724 -0.8911 37 1 3.7813 -1.3836 -0.0953 38 1 3.9099 -1.4302 -1.8708 39 1 2.4913 -2.9100 -3.9632 40 1 2.1609 -1.2757 -3.3403 41 1 0.1645 -0.8610 -2.3590 42 1 -0.1703 -4.1748 -1.5079 43 1 0.1663 -4.3442 -3.2475 44 1 1.2171 -5.2774 0.1397 45 1 2.9339 -7.0260 0.5575 46 1 4.2617 -7.8846 -1.3308 47 1 2.2802 -5.3931 -3.9939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602085392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:36 Heat of formation + Delta-G solvation = 9.695502 kcal Electronic energy + Delta-G solvation = -28687.852927 eV Core-core repulsion = 25063.646386 eV Total energy + Delta-G solvation = -3624.206540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.23305 -39.57369 -37.47920 -35.34297 -33.34632 -32.97856 -31.87452 -31.31023 -30.48278 -27.38291 -26.66081 -25.86650 -23.36548 -23.25514 -22.77502 -22.43258 -21.53010 -19.76097 -18.24449 -17.37667 -16.83923 -16.39904 -15.80811 -15.66102 -15.00391 -14.88612 -14.60989 -14.16407 -13.97116 -13.80508 -13.65400 -13.39685 -13.23302 -12.73352 -12.67228 -12.65741 -12.44404 -12.33195 -11.93599 -11.73159 -11.42918 -11.17365 -11.04262 -10.97154 -10.74555 -10.60798 -10.50359 -10.36551 -10.21444 -10.10211 -9.54646 -9.40029 -9.15547 -8.92946 -8.68476 -8.50856 -7.71677 -7.59728 -6.55220 -4.43729 1.36591 1.59112 3.28960 3.31767 3.43379 3.50549 3.79764 4.20110 4.32957 4.51666 4.70626 5.00303 5.04761 5.10759 5.16370 5.20174 5.28518 5.32684 5.39156 5.50173 5.55771 5.67329 5.75854 5.85140 5.92456 5.96547 6.00152 6.00506 6.12475 6.17372 6.23965 6.26113 6.31897 6.39900 6.41749 6.44752 6.51454 6.61340 6.72728 6.78013 6.79550 6.99898 7.30747 7.49941 7.57942 7.80428 8.15586 8.22300 8.42501 8.62365 9.10085 9.36024 10.75793 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009209 B = 0.006798 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.918160 B = 4117.804947 C = 6101.809489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.520 5.520 3 C 0.055 3.945 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.105 4.105 7 C 0.066 3.934 8 H 0.078 0.922 9 C 0.522 3.478 10 O -0.555 6.555 11 N -0.585 5.585 12 C 0.206 3.794 13 C -0.618 4.618 14 H 0.057 0.943 15 C 0.037 3.963 16 N -0.897 5.897 17 Si 1.062 2.938 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.167 3.833 22 C -0.139 4.139 23 C -0.054 4.054 24 C -0.180 4.180 25 C 0.085 3.915 26 N -0.492 5.492 27 C 0.109 3.891 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.040 0.960 41 H 0.281 0.719 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.137 0.863 45 H 0.128 0.872 46 H 0.148 0.852 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.001 -1.635 4.220 7.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.245 5.245 3 C -0.073 4.073 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.144 4.144 7 C -0.045 4.045 8 H 0.096 0.904 9 C 0.309 3.691 10 O -0.434 6.434 11 N -0.317 5.317 12 C 0.088 3.912 13 C -0.657 4.657 14 H 0.076 0.924 15 C -0.172 4.172 16 N -0.535 5.535 17 Si 0.889 3.111 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.212 1.212 21 C 0.043 3.957 22 C -0.142 4.142 23 C -0.080 4.080 24 C -0.200 4.200 25 C -0.072 4.072 26 N -0.200 5.200 27 C -0.048 4.048 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.155 0.845 45 H 0.146 0.854 46 H 0.166 0.834 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.045 -1.673 4.258 6.811 hybrid contribution 0.617 -0.021 0.118 0.629 sum 5.663 -1.694 4.377 7.355 Atomic orbital electron populations 1.22564 0.86134 1.03641 1.00932 1.61727 1.08789 1.12071 1.41933 1.22087 0.95116 0.89680 1.00399 1.21586 0.94945 0.99610 0.99174 1.21561 0.99540 0.95638 0.98846 1.21509 0.92931 0.97456 1.02484 1.21798 0.95189 0.93104 0.94422 0.90439 1.20244 0.78314 0.86897 0.83622 1.90539 1.51402 1.70101 1.31335 1.49019 1.57703 1.16582 1.08361 1.19687 0.95504 0.93923 0.82117 1.22210 1.05067 1.34915 1.03499 0.92433 1.25819 1.00216 0.92010 0.99162 1.70880 1.37039 1.38351 1.07215 0.83646 0.75804 0.76675 0.74926 1.20661 1.21245 1.21210 1.19931 0.91904 0.80430 1.03403 1.21544 0.99988 0.98474 0.94186 1.21682 0.95876 0.93552 0.96934 1.22100 0.98242 0.99255 1.00438 1.22643 0.97982 0.98316 0.88291 1.67676 1.17881 1.11513 1.22960 1.22725 0.90550 0.91829 0.99656 0.90353 0.92761 0.92818 0.94919 0.90906 0.91818 0.91236 0.92026 0.91780 0.91047 0.91515 0.95335 0.94243 0.90316 0.90744 0.88496 0.84509 0.85354 0.83422 0.82798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 8.47 60.07 0.51 0.82 16 2 N -0.52 -10.07 4.51 -236.32 -1.07 -11.14 16 3 C 0.06 0.89 5.46 -3.83 -0.02 0.87 16 4 C -0.12 -1.57 6.09 -26.65 -0.16 -1.73 16 5 C -0.12 -1.69 6.00 -26.61 -0.16 -1.85 16 6 C -0.11 -1.83 5.22 -26.66 -0.14 -1.96 16 7 C 0.07 1.35 0.89 -68.88 -0.06 1.29 16 8 H 0.08 1.77 4.90 -51.93 -0.25 1.51 16 9 C 0.52 11.61 4.52 -10.99 -0.05 11.56 16 10 O -0.55 -13.20 14.20 5.56 0.08 -13.12 16 11 N -0.58 -12.75 2.03 -176.43 -0.36 -13.11 16 12 C 0.21 4.64 5.46 -5.19 -0.03 4.61 16 13 C -0.62 -15.24 8.36 -34.44 -0.29 -15.53 16 14 H 0.06 1.41 7.81 -52.49 -0.41 1.00 16 15 C 0.04 0.93 5.38 -17.82 -0.10 0.83 16 16 N -0.90 -23.83 12.57 55.43 0.70 -23.14 16 17 Si 1.06 22.92 29.90 -169.99 -5.08 17.84 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 21 C 0.17 3.37 5.35 -5.20 -0.03 3.35 16 22 C -0.14 -2.49 5.45 -104.48 -0.57 -3.06 16 23 C -0.05 -0.90 9.60 -39.27 -0.38 -1.28 16 24 C -0.18 -2.57 10.11 -39.44 -0.40 -2.97 16 25 C 0.08 1.22 11.18 -17.54 -0.20 1.03 16 26 N -0.49 -8.25 10.36 -13.25 -0.14 -8.39 16 27 C 0.11 1.90 10.88 -17.55 -0.19 1.71 16 28 H 0.08 1.81 5.94 -51.93 -0.31 1.51 16 29 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 30 H 0.05 1.20 6.50 -51.93 -0.34 0.87 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 38 H 0.07 1.15 7.73 -51.93 -0.40 0.75 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.04 0.91 4.99 -51.93 -0.26 0.66 16 41 H 0.28 7.06 1.08 -40.82 -0.04 7.01 16 42 H 0.07 1.56 7.51 -51.93 -0.39 1.17 16 43 H 0.10 1.97 7.22 -51.93 -0.38 1.59 16 44 H 0.14 2.36 7.72 -52.49 -0.41 1.95 16 45 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 46 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.15 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 362.09 15.07 5.46 5.46 Total: -1.00 -28.77 362.09 -9.72 -38.49 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -7.05 Total: 9.45 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.26 Total: -2.34 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.86 Total: -55.78 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.08 Total: 17.84 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.77 -9.72 -38.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602085392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.186 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds