Wall clock time and date at job start Tue Mar 31 2020 11:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46853 * 110.99880 * 2 1 4 4 C 1.53039 * 109.52333 * 174.16054 * 3 2 1 5 5 C 1.53126 * 109.27459 * 59.17626 * 4 3 2 6 6 C 1.53110 * 109.16411 * 302.34644 * 5 4 3 7 7 C 1.46840 * 111.00067 * 235.78919 * 2 1 3 8 8 H 1.09005 * 109.45933 * 65.83281 * 7 2 1 9 9 C 1.50703 * 109.46279 * 305.85797 * 7 2 1 10 10 O 1.21280 * 119.99714 * 331.87248 * 9 7 2 11 11 N 1.34772 * 120.00169 * 151.87032 * 9 7 2 12 12 C 1.46508 * 120.00094 * 3.06600 * 11 9 7 13 13 C 1.50700 * 109.46895 * 239.10903 * 12 11 9 14 14 H 1.07997 * 119.99718 * 239.58287 * 13 12 11 15 15 C 1.37877 * 120.00201 * 59.58517 * 13 12 11 16 16 N 1.31515 * 120.00133 * 0.63557 * 15 13 12 17 17 Si 1.86795 * 119.99994 * 180.63895 * 15 13 12 18 18 H 1.48502 * 109.47301 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.47116 * 300.00009 * 17 15 13 20 20 H 1.48507 * 109.47438 * 59.99655 * 17 15 13 21 21 C 1.46497 * 120.00156 * 183.05980 * 11 9 7 22 22 C 1.50699 * 109.47137 * 274.08338 * 21 11 9 23 23 C 1.38681 * 120.41607 * 95.36978 * 22 21 11 24 24 C 1.38625 * 118.41745 * 179.97438 * 23 22 21 25 25 C 1.38229 * 119.16385 * 0.02562 * 24 23 22 26 26 N 1.31856 * 120.76370 * 359.97438 * 25 24 23 27 27 C 1.31885 * 121.72467 * 359.70117 * 26 25 24 28 28 H 1.08996 * 109.47151 * 184.21233 * 1 2 3 29 29 H 1.09005 * 109.46907 * 304.21429 * 1 2 3 30 30 H 1.08998 * 109.46956 * 64.20551 * 1 2 3 31 31 H 1.08999 * 109.46127 * 294.17441 * 3 2 1 32 32 H 1.08999 * 109.46090 * 54.14391 * 3 2 1 33 33 H 1.08991 * 109.50364 * 179.11730 * 4 3 2 34 34 H 1.08997 * 109.50266 * 299.24032 * 4 3 2 35 35 H 1.08998 * 109.52010 * 62.25555 * 5 4 3 36 36 H 1.09005 * 109.51622 * 182.37734 * 5 4 3 37 37 H 1.09008 * 109.50501 * 297.71697 * 6 5 4 38 38 H 1.09000 * 109.50402 * 177.59634 * 6 5 4 39 39 H 1.08997 * 109.47052 * 119.10277 * 12 11 9 40 40 H 1.09005 * 109.46890 * 359.10641 * 12 11 9 41 41 H 0.97008 * 119.99888 * 354.55297 * 16 15 13 42 42 H 1.08997 * 109.46844 * 34.08147 * 21 11 9 43 43 H 1.08999 * 109.47233 * 154.08734 * 21 11 9 44 44 H 1.07995 * 120.78971 * 359.97438 * 23 22 21 45 45 H 1.08004 * 120.41618 * 179.97438 * 24 23 22 46 46 H 1.07999 * 119.61424 * 180.02562 * 25 24 23 47 47 H 1.07998 * 119.61663 * 180.30873 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5370 -1.0144 6 6 3.5181 -0.8714 -1.0209 7 6 1.9953 -0.7708 -1.1337 8 1 1.7326 -0.2707 -2.0660 9 6 1.3982 -2.1544 -1.1205 10 8 1.0508 -2.6550 -0.0719 11 7 1.2501 -2.8355 -2.2741 12 6 1.7309 -2.2588 -3.5321 13 6 0.5797 -2.1243 -4.4953 14 1 0.6097 -2.6339 -5.4470 15 6 -0.5116 -1.3506 -4.1616 16 7 -0.5425 -0.7198 -3.0080 17 14 -1.9463 -1.1983 -5.3481 18 1 -2.9856 -0.3171 -4.7575 19 1 -1.4705 -0.6145 -6.6279 20 1 -2.5238 -2.5428 -5.6018 21 6 0.6086 -4.1525 -2.2700 22 6 1.6374 -5.2114 -1.9679 23 6 1.8126 -5.6704 -0.6710 24 6 2.7703 -6.6457 -0.4401 25 6 3.5139 -7.1245 -1.5024 26 7 3.3201 -6.6646 -2.7229 27 6 2.4137 -5.7418 -2.9805 28 1 -0.3633 -1.0248 0.0755 29 1 -0.3633 0.5779 0.8499 30 1 -0.3633 0.4472 -0.9253 31 1 1.7325 1.8608 -0.9376 32 1 1.5634 1.9257 0.8330 33 1 3.9099 2.3512 0.1310 34 1 3.7814 0.8568 1.0906 35 1 3.8887 1.0355 -1.9560 36 1 5.1999 0.4724 -0.8911 37 1 3.7813 -1.3836 -0.0953 38 1 3.9099 -1.4302 -1.8708 39 1 2.4913 -2.9100 -3.9632 40 1 2.1609 -1.2757 -3.3403 41 1 0.1645 -0.8610 -2.3590 42 1 -0.1703 -4.1748 -1.5079 43 1 0.1663 -4.3442 -3.2475 44 1 1.2171 -5.2774 0.1397 45 1 2.9339 -7.0260 0.5575 46 1 4.2617 -7.8846 -1.3308 47 1 2.2802 -5.3931 -3.9939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602085392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:35 Heat of formation + Delta-G solvation = -6.458094 kcal Electronic energy + Delta-G solvation = -28688.553399 eV Core-core repulsion = 25063.646386 eV Total energy + Delta-G solvation = -3624.907013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.80305 -40.93586 -38.98661 -37.14139 -34.92370 -34.42294 -33.39425 -32.72550 -31.86815 -29.20435 -28.17762 -27.41162 -24.79948 -24.76303 -24.37905 -23.88412 -22.91327 -21.12008 -19.92790 -19.19424 -18.28010 -17.86537 -17.40110 -17.06074 -16.54461 -16.32097 -16.05046 -15.79220 -15.48140 -15.32647 -15.14384 -14.78578 -14.63719 -14.36590 -14.13136 -14.01247 -13.92494 -13.88046 -13.59227 -13.25932 -12.92964 -12.74562 -12.67015 -12.48526 -12.36356 -12.26720 -11.96141 -11.83123 -11.70196 -11.38844 -11.21265 -10.87074 -10.60130 -10.48982 -10.46105 -9.95931 -9.41102 -9.28331 -8.52331 -6.44235 0.09692 0.29389 1.54119 1.57141 1.70186 1.77975 2.21287 2.53722 2.86198 2.98145 3.20010 3.49723 3.62692 3.77244 3.85727 3.87740 3.94316 4.03666 4.07537 4.09728 4.13550 4.25322 4.44955 4.46670 4.50825 4.58861 4.62403 4.65683 4.69829 4.77291 4.82316 4.83717 4.89959 4.90999 4.99486 5.05847 5.09337 5.13980 5.17011 5.37391 5.38832 5.54149 5.74351 5.88606 5.93822 6.11532 6.18369 6.58924 6.74300 6.96364 7.33333 7.43710 8.81115 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009209 B = 0.006798 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.918160 B = 4117.804947 C = 6101.809489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.524 5.524 3 C 0.050 3.950 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.101 4.101 7 C 0.072 3.928 8 H 0.051 0.949 9 C 0.515 3.485 10 O -0.576 6.576 11 N -0.586 5.586 12 C 0.213 3.787 13 C -0.629 4.629 14 H 0.057 0.943 15 C -0.004 4.004 16 N -0.927 5.927 17 Si 1.101 2.899 18 H -0.291 1.291 19 H -0.271 1.271 20 H -0.275 1.275 21 C 0.172 3.828 22 C -0.153 4.153 23 C -0.066 4.066 24 C -0.168 4.168 25 C 0.091 3.909 26 N -0.505 5.505 27 C 0.103 3.897 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.021 0.979 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.032 0.968 41 H 0.285 0.715 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.126 0.874 45 H 0.165 0.835 46 H 0.190 0.810 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.982 -1.913 4.966 9.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.249 5.249 3 C -0.077 4.077 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.140 4.140 7 C -0.040 4.040 8 H 0.068 0.932 9 C 0.304 3.696 10 O -0.457 6.457 11 N -0.317 5.317 12 C 0.094 3.906 13 C -0.667 4.667 14 H 0.075 0.925 15 C -0.208 4.208 16 N -0.566 5.566 17 Si 0.925 3.075 18 H -0.217 1.217 19 H -0.196 1.196 20 H -0.200 1.200 21 C 0.049 3.951 22 C -0.156 4.156 23 C -0.093 4.093 24 C -0.187 4.187 25 C -0.066 4.066 26 N -0.214 5.214 27 C -0.053 4.053 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.144 0.856 45 H 0.183 0.817 46 H 0.207 0.793 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.048 -1.958 4.988 8.853 hybrid contribution 0.037 -0.013 -0.050 0.063 sum 7.085 -1.971 4.938 8.858 Atomic orbital electron populations 1.22369 0.87342 1.01650 1.00779 1.61811 1.07800 1.14147 1.41189 1.22292 0.97212 0.87632 1.00612 1.21596 0.92691 1.01466 0.98854 1.21585 1.01134 0.93373 0.99114 1.21515 0.90703 0.99759 1.01985 1.21720 0.97127 0.91603 0.93533 0.93191 1.20651 0.78029 0.87656 0.83301 1.90510 1.52453 1.70800 1.31925 1.48897 1.57518 1.17221 1.08059 1.19551 0.95134 0.93821 0.82100 1.22436 1.05656 1.34781 1.03860 0.92518 1.26876 1.02300 0.91802 0.99857 1.70916 1.37982 1.39592 1.08080 0.83124 0.73421 0.76998 0.73974 1.21681 1.19601 1.20027 1.19837 0.92369 0.80719 1.02212 1.21264 1.00322 0.98730 0.95267 1.21718 0.96880 0.94644 0.96015 1.22449 0.96424 0.97567 1.02284 1.23349 0.97950 0.98074 0.87250 1.67732 1.17728 1.11493 1.24465 1.22648 0.90929 0.92377 0.99393 0.93622 0.90120 0.95239 0.96095 0.88923 0.88519 0.90827 0.92436 0.88817 0.91463 0.91930 0.94358 0.95007 0.89983 0.92562 0.89376 0.85626 0.81721 0.79328 0.83067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 8.47 127.69 1.08 2.21 16 2 N -0.52 -20.40 4.51 -901.59 -4.06 -24.47 16 3 C 0.05 1.53 5.46 86.33 0.47 2.00 16 4 C -0.11 -2.65 6.09 30.65 0.19 -2.46 16 5 C -0.11 -3.02 6.00 30.67 0.18 -2.84 16 6 C -0.10 -3.46 5.22 30.64 0.16 -3.30 16 7 C 0.07 2.99 0.89 44.19 0.04 3.03 16 8 H 0.05 2.38 4.90 -2.38 -0.01 2.37 16 9 C 0.52 23.78 4.52 87.66 0.40 24.17 16 10 O -0.58 -28.48 14.20 -3.03 -0.04 -28.52 16 11 N -0.59 -26.60 2.03 -830.50 -1.69 -28.29 16 12 C 0.21 9.89 5.46 85.63 0.47 10.36 16 13 C -0.63 -31.76 8.36 25.60 0.21 -31.55 16 14 H 0.06 2.81 7.81 -2.91 -0.02 2.79 16 15 C 0.00 -0.21 5.38 84.65 0.46 0.24 16 16 N -0.93 -51.04 12.57 21.45 0.27 -50.77 16 17 Si 1.10 46.97 29.90 68.60 2.05 49.02 16 18 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 C 0.17 7.31 5.35 85.63 0.46 7.77 16 22 C -0.15 -5.59 5.45 -19.77 -0.11 -5.70 16 23 C -0.07 -2.19 9.60 22.47 0.22 -1.98 16 24 C -0.17 -4.35 10.11 22.36 0.23 -4.12 16 25 C 0.09 2.33 11.18 84.69 0.95 3.28 16 26 N -0.51 -16.14 10.36 -195.84 -2.03 -18.17 16 27 C 0.10 3.57 10.88 84.67 0.92 4.49 16 28 H 0.04 2.21 5.94 -2.39 -0.01 2.19 16 29 H 0.08 2.88 8.09 -2.38 -0.02 2.86 16 30 H 0.03 1.37 6.50 -2.39 -0.02 1.36 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 2.46 8.09 -2.39 -0.02 2.45 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 38 H 0.06 2.15 7.73 -2.39 -0.02 2.13 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.03 1.53 4.99 -2.38 -0.01 1.52 16 41 H 0.28 14.91 1.08 -92.70 -0.10 14.81 16 42 H 0.06 2.53 7.51 -2.39 -0.02 2.52 16 43 H 0.09 3.79 7.22 -2.39 -0.02 3.77 16 44 H 0.13 4.43 7.72 -2.91 -0.02 4.41 16 45 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 46 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 47 H 0.15 5.16 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -64.36 362.09 2.44 -61.92 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 1.62 Total: 33.66 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 6.32 Total: 5.61 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -7.51 Total: -121.69 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.04 Total: -28.52 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.05 Total: 49.02 kcal Total: -64.36 2.44 -61.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602085392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.466 kcal (2) G-P(sol) polarization free energy of solvation -64.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds