Wall clock time and date at job start Tue Mar 31 2020 11:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 110.99725 * 2 1 4 4 C 1.46900 * 111.00425 * 123.95608 * 2 1 3 5 5 C 1.52991 * 109.47051 * 73.54887 * 4 2 1 6 6 C 1.50701 * 115.55432 * 56.67538 * 5 4 2 7 7 O 1.21273 * 120.00230 * 247.22179 * 6 5 4 8 8 N 1.34784 * 119.99878 * 67.21159 * 6 5 4 9 9 C 1.46499 * 119.99540 * 355.38656 * 8 6 5 10 10 C 1.50704 * 109.47108 * 263.88518 * 9 8 6 11 11 H 1.08006 * 119.99724 * 4.89772 * 10 9 8 12 12 C 1.37872 * 120.00172 * 184.89789 * 10 9 8 13 13 N 1.31516 * 120.00196 * 4.92398 * 12 10 9 14 14 Si 1.86806 * 120.00017 * 184.92836 * 12 10 9 15 15 H 1.48492 * 109.47118 * 60.00030 * 14 12 10 16 16 H 1.48504 * 109.47087 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47017 * 299.99559 * 14 12 10 18 18 C 1.46493 * 119.99787 * 175.38286 * 8 6 5 19 19 C 1.50707 * 109.47207 * 90.00334 * 18 8 6 20 20 C 1.38228 * 119.61633 * 94.99500 * 19 18 8 21 21 C 1.38633 * 119.16027 * 180.02562 * 20 19 18 22 22 C 1.38670 * 118.41681 * 359.97438 * 21 20 19 23 23 C 1.38176 * 119.16760 * 0.28016 * 22 21 20 24 24 N 1.31853 * 119.61878 * 275.02210 * 19 18 8 25 25 C 1.53007 * 117.49974 * 202.34575 * 5 4 2 26 26 C 1.53004 * 117.50230 * 271.00343 * 5 4 2 27 27 H 1.08997 * 109.47492 * 299.91022 * 1 2 3 28 28 H 1.09005 * 109.47452 * 59.91887 * 1 2 3 29 29 H 1.09000 * 109.46841 * 179.91156 * 1 2 3 30 30 H 1.09003 * 109.46821 * 188.93929 * 3 2 1 31 31 H 1.08998 * 109.47186 * 308.93819 * 3 2 1 32 32 H 1.08994 * 109.46873 * 68.93951 * 3 2 1 33 33 H 1.09006 * 109.46771 * 313.55012 * 4 2 1 34 34 H 1.08996 * 109.47061 * 193.55545 * 4 2 1 35 35 H 1.09000 * 109.47631 * 23.88839 * 9 8 6 36 36 H 1.09002 * 109.46795 * 143.89450 * 9 8 6 37 37 H 0.96996 * 120.00062 * 185.00526 * 13 12 10 38 38 H 1.08999 * 109.47566 * 330.00506 * 18 8 6 39 39 H 1.09006 * 109.47214 * 209.99859 * 18 8 6 40 40 H 1.08004 * 120.42133 * 0.02562 * 20 19 18 41 41 H 1.07995 * 120.79250 * 180.02562 * 21 20 19 42 42 H 1.08003 * 120.41312 * 179.97438 * 22 21 20 43 43 H 1.07998 * 119.61913 * 179.69658 * 23 22 21 44 44 H 1.08996 * 117.49796 * 215.00871 * 25 5 4 45 45 H 1.08994 * 117.49458 * 0.02562 * 25 5 4 46 46 H 1.09006 * 117.49646 * 359.97438 * 26 5 4 47 47 H 1.08995 * 117.49902 * 144.97395 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.7969 -2.2612 0.8812 6 6 2.4115 -2.7901 -0.3891 7 8 1.6999 -3.1845 -1.2885 8 7 3.7519 -2.8248 -0.5257 9 6 4.6093 -2.2559 0.5171 10 6 4.9917 -0.8478 0.1403 11 1 4.5692 -0.3915 -0.7428 12 6 5.8808 -0.1420 0.9227 13 7 6.4692 -0.7287 1.9421 14 14 6.2495 1.6478 0.5351 15 1 4.9958 2.4397 0.6133 16 1 7.2307 2.1750 1.5173 17 1 6.8159 1.7513 -0.8337 18 6 4.3513 -3.4314 -1.7168 19 6 4.5224 -2.3808 -2.7836 20 6 5.7332 -1.7257 -2.9093 21 6 5.8800 -0.7605 -3.8936 22 6 4.7988 -0.4895 -4.7186 23 6 3.6177 -1.1813 -4.5299 24 7 3.5154 -2.0966 -3.5859 25 6 1.7781 -3.1900 2.0969 26 6 0.4802 -2.8885 1.3434 27 1 -0.3634 0.5124 0.8907 28 1 -0.3634 0.5151 -0.8893 29 1 -0.3633 -1.0277 -0.0016 30 1 3.0733 1.3469 -0.1597 31 1 1.5226 1.9421 -0.7993 32 1 1.7808 1.8430 0.9590 33 1 1.4647 -0.4794 2.0454 34 1 3.0584 -0.5557 1.2564 35 1 4.0706 -2.2449 1.4646 36 1 5.5096 -2.8621 0.6180 37 1 7.0381 -0.2141 2.5356 38 1 3.7007 -4.2233 -2.0879 39 1 5.3243 -3.8507 -1.4605 40 1 6.5544 -1.9628 -2.2491 41 1 6.8143 -0.2329 -4.0155 42 1 4.8775 0.2564 -5.4956 43 1 2.7695 -0.9726 -5.1650 44 1 2.2103 -4.1835 1.9779 45 1 1.9067 -2.7358 3.0792 46 1 -0.2444 -2.2360 1.8306 47 1 0.0583 -3.6834 0.7285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602090420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:22 Heat of formation + Delta-G solvation = 43.228830 kcal Electronic energy + Delta-G solvation = -28924.592505 eV Core-core repulsion = 25301.840079 eV Total energy + Delta-G solvation = -3622.752426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.90611 -39.22053 -36.95604 -35.30200 -34.80468 -32.72668 -31.83121 -31.08996 -27.93873 -27.15612 -27.00331 -26.09973 -23.19351 -22.90049 -22.39781 -22.02130 -21.52683 -20.65150 -17.77498 -16.63521 -16.30191 -16.08710 -15.54554 -15.41144 -15.08634 -14.84470 -14.56192 -14.50620 -14.15424 -13.75140 -13.56569 -13.15462 -12.86850 -12.61232 -12.33239 -12.27227 -12.03788 -11.79363 -11.66788 -11.47864 -11.39543 -11.29131 -11.15681 -11.12911 -10.93277 -10.86907 -10.52287 -10.17563 -9.85321 -9.68283 -9.47750 -9.27613 -8.81653 -8.79862 -8.55087 -8.33023 -7.72746 -7.58202 -6.16750 -4.19269 1.66484 1.90229 3.19545 3.26474 3.29114 3.54454 3.95353 4.15324 4.31844 4.57828 4.60376 4.90602 5.13705 5.20551 5.29444 5.32489 5.33793 5.36482 5.58136 5.61443 5.67588 5.72563 5.76909 5.92538 5.94205 5.96261 6.00316 6.08299 6.16559 6.26406 6.29366 6.31578 6.33321 6.39991 6.46752 6.52172 6.68740 6.75130 6.78575 6.86914 7.25637 7.28917 7.60164 7.66489 7.68682 7.80719 8.12324 8.49904 8.68220 8.88930 9.25210 9.45645 10.89337 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009304 B = 0.007799 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.754668 B = 3589.320691 C = 4642.267962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.528 5.528 3 C 0.030 3.970 4 C 0.082 3.918 5 C -0.120 4.120 6 C 0.569 3.431 7 O -0.546 6.546 8 N -0.590 5.590 9 C 0.234 3.766 10 C -0.514 4.514 11 H 0.065 0.935 12 C 0.066 3.934 13 N -0.891 5.891 14 Si 0.879 3.121 15 H -0.274 1.274 16 H -0.289 1.289 17 H -0.276 1.276 18 C 0.175 3.825 19 C 0.129 3.871 20 C -0.130 4.130 21 C -0.087 4.087 22 C -0.183 4.183 23 C 0.088 3.912 24 N -0.454 5.454 25 C -0.159 4.159 26 C -0.160 4.160 27 H 0.013 0.987 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.025 0.975 34 H 0.129 0.871 35 H 0.042 0.958 36 H 0.034 0.966 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.135 0.865 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.143 0.857 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 -0.538 -3.582 5.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.251 5.251 3 C -0.118 4.118 4 C -0.046 4.046 5 C -0.124 4.124 6 C 0.356 3.644 7 O -0.423 6.423 8 N -0.321 5.321 9 C 0.114 3.886 10 C -0.553 4.553 11 H 0.083 0.917 12 C -0.136 4.136 13 N -0.530 5.530 14 Si 0.707 3.293 15 H -0.200 1.200 16 H -0.215 1.215 17 H -0.202 1.202 18 C 0.050 3.950 19 C -0.010 4.010 20 C -0.151 4.151 21 C -0.113 4.113 22 C -0.204 4.204 23 C -0.070 4.070 24 N -0.163 5.163 25 C -0.197 4.197 26 C -0.198 4.198 27 H 0.031 0.969 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.147 0.853 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.153 0.847 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.161 0.839 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.110 0.890 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.221 -1.413 -4.254 6.882 hybrid contribution 0.922 2.433 0.586 2.667 sum -4.299 1.020 -3.669 5.743 Atomic orbital electron populations 1.22441 0.88651 1.02088 0.99106 1.61689 1.06617 1.13235 1.43569 1.22371 1.02055 0.88583 0.98807 1.22029 1.04393 0.88572 0.89570 1.21222 1.01077 0.95302 0.94805 1.19040 0.81892 0.76859 0.86624 1.90614 1.61292 1.48970 1.41466 1.47996 1.05774 1.58179 1.20102 1.19536 0.89616 0.93628 0.85772 1.21482 1.24236 0.98518 1.11084 0.91686 1.24862 0.95085 0.97879 0.95786 1.69912 1.31208 1.35580 1.16295 0.86871 0.78304 0.85878 0.78273 1.19980 1.21452 1.20151 1.20038 0.98909 0.92477 0.83553 1.21609 0.88712 0.96728 0.93994 1.21980 0.99329 0.96390 0.97390 1.21452 0.98686 0.96537 0.94618 1.21986 0.95096 1.01867 1.01416 1.22582 0.96374 0.92653 0.95364 1.67572 1.30625 1.14874 1.03191 1.23000 1.00896 1.00120 0.95694 1.23019 0.90688 1.03241 1.02839 0.96880 0.92405 0.90962 0.90342 0.92577 0.96566 0.95645 0.85305 0.93986 0.94800 0.92670 0.89843 0.89721 0.84686 0.85775 0.85970 0.83914 0.88630 0.88354 0.88992 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.33 60.06 0.56 0.98 16 2 N -0.53 -10.08 4.70 -251.26 -1.18 -11.26 16 3 C 0.03 0.55 9.54 60.07 0.57 1.12 16 4 C 0.08 1.56 4.45 -3.83 -0.02 1.55 16 5 C -0.12 -2.24 0.65 -155.66 -0.10 -2.34 16 6 C 0.57 12.10 6.66 -10.98 -0.07 12.03 16 7 O -0.55 -12.92 16.37 5.56 0.09 -12.83 16 8 N -0.59 -12.31 2.45 -176.43 -0.43 -12.74 16 9 C 0.23 5.22 4.73 -5.19 -0.02 5.19 16 10 C -0.51 -12.21 6.27 -34.44 -0.22 -12.43 16 11 H 0.06 1.67 7.12 -52.48 -0.37 1.29 16 12 C 0.07 1.63 5.45 -17.82 -0.10 1.53 16 13 N -0.89 -23.05 13.28 55.43 0.74 -22.31 16 14 Si 0.88 19.72 29.38 -169.99 -4.99 14.72 16 15 H -0.27 -6.06 6.89 56.52 0.39 -5.67 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 C 0.17 3.36 5.71 -5.19 -0.03 3.33 16 19 C 0.13 2.53 5.87 -82.58 -0.48 2.04 16 20 C -0.13 -2.38 8.69 -39.44 -0.34 -2.72 16 21 C -0.09 -1.42 10.18 -39.28 -0.40 -1.82 16 22 C -0.18 -2.83 10.11 -39.44 -0.40 -3.23 16 23 C 0.09 1.51 11.18 -17.55 -0.20 1.32 16 24 N -0.45 -9.19 10.27 -9.47 -0.10 -9.29 16 25 C -0.16 -2.52 9.15 -26.69 -0.24 -2.76 16 26 C -0.16 -2.52 8.17 -26.69 -0.22 -2.74 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.07 1.21 5.91 -51.93 -0.31 0.90 16 30 H 0.08 1.62 7.63 -51.93 -0.40 1.23 16 31 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 33 H 0.03 0.45 7.99 -51.93 -0.42 0.03 16 34 H 0.13 2.83 4.23 -51.93 -0.22 2.61 16 35 H 0.04 0.96 5.20 -51.93 -0.27 0.69 16 36 H 0.03 0.80 7.97 -51.93 -0.41 0.38 16 37 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 38 H 0.08 1.62 7.49 -51.93 -0.39 1.23 16 39 H 0.08 1.44 7.85 -51.93 -0.41 1.03 16 40 H 0.14 2.42 8.06 -52.48 -0.42 1.99 16 41 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 42 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 43 H 0.14 2.09 8.06 -52.49 -0.42 1.66 16 44 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 45 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.09 1.28 7.89 -51.93 -0.41 0.87 16 47 H 0.10 1.58 8.03 -51.93 -0.42 1.16 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -28.91 380.33 -9.24 -38.16 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.39 Total: 8.77 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.71 Total: 1.05 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.97 Total: -55.60 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.99 Total: 14.72 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.91 -9.24 -38.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602090420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.385 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds