Wall clock time and date at job start Tue Mar 31 2020 11:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 110.99725 * 2 1 4 4 C 1.46900 * 111.00425 * 123.95608 * 2 1 3 5 5 C 1.52991 * 109.47051 * 73.54887 * 4 2 1 6 6 C 1.50701 * 115.55432 * 56.67538 * 5 4 2 7 7 O 1.21273 * 120.00230 * 247.22179 * 6 5 4 8 8 N 1.34784 * 119.99878 * 67.21159 * 6 5 4 9 9 C 1.46499 * 119.99540 * 355.38656 * 8 6 5 10 10 C 1.50704 * 109.47108 * 263.88518 * 9 8 6 11 11 H 1.08006 * 119.99724 * 4.89772 * 10 9 8 12 12 C 1.37872 * 120.00172 * 184.89789 * 10 9 8 13 13 N 1.31516 * 120.00196 * 4.92398 * 12 10 9 14 14 Si 1.86806 * 120.00017 * 184.92836 * 12 10 9 15 15 H 1.48492 * 109.47118 * 60.00030 * 14 12 10 16 16 H 1.48504 * 109.47087 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47017 * 299.99559 * 14 12 10 18 18 C 1.46493 * 119.99787 * 175.38286 * 8 6 5 19 19 C 1.50707 * 109.47207 * 90.00334 * 18 8 6 20 20 C 1.38228 * 119.61633 * 94.99500 * 19 18 8 21 21 C 1.38633 * 119.16027 * 180.02562 * 20 19 18 22 22 C 1.38670 * 118.41681 * 359.97438 * 21 20 19 23 23 C 1.38176 * 119.16760 * 0.28016 * 22 21 20 24 24 N 1.31853 * 119.61878 * 275.02210 * 19 18 8 25 25 C 1.53007 * 117.49974 * 202.34575 * 5 4 2 26 26 C 1.53004 * 117.50230 * 271.00343 * 5 4 2 27 27 H 1.08997 * 109.47492 * 299.91022 * 1 2 3 28 28 H 1.09005 * 109.47452 * 59.91887 * 1 2 3 29 29 H 1.09000 * 109.46841 * 179.91156 * 1 2 3 30 30 H 1.09003 * 109.46821 * 188.93929 * 3 2 1 31 31 H 1.08998 * 109.47186 * 308.93819 * 3 2 1 32 32 H 1.08994 * 109.46873 * 68.93951 * 3 2 1 33 33 H 1.09006 * 109.46771 * 313.55012 * 4 2 1 34 34 H 1.08996 * 109.47061 * 193.55545 * 4 2 1 35 35 H 1.09000 * 109.47631 * 23.88839 * 9 8 6 36 36 H 1.09002 * 109.46795 * 143.89450 * 9 8 6 37 37 H 0.96996 * 120.00062 * 185.00526 * 13 12 10 38 38 H 1.08999 * 109.47566 * 330.00506 * 18 8 6 39 39 H 1.09006 * 109.47214 * 209.99859 * 18 8 6 40 40 H 1.08004 * 120.42133 * 0.02562 * 20 19 18 41 41 H 1.07995 * 120.79250 * 180.02562 * 21 20 19 42 42 H 1.08003 * 120.41312 * 179.97438 * 22 21 20 43 43 H 1.07998 * 119.61913 * 179.69658 * 23 22 21 44 44 H 1.08996 * 117.49796 * 215.00871 * 25 5 4 45 45 H 1.08994 * 117.49458 * 0.02562 * 25 5 4 46 46 H 1.09006 * 117.49646 * 359.97438 * 26 5 4 47 47 H 1.08995 * 117.49902 * 144.97395 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.7969 -2.2612 0.8812 6 6 2.4115 -2.7901 -0.3891 7 8 1.6999 -3.1845 -1.2885 8 7 3.7519 -2.8248 -0.5257 9 6 4.6093 -2.2559 0.5171 10 6 4.9917 -0.8478 0.1403 11 1 4.5692 -0.3915 -0.7428 12 6 5.8808 -0.1420 0.9227 13 7 6.4692 -0.7287 1.9421 14 14 6.2495 1.6478 0.5351 15 1 4.9958 2.4397 0.6133 16 1 7.2307 2.1750 1.5173 17 1 6.8159 1.7513 -0.8337 18 6 4.3513 -3.4314 -1.7168 19 6 4.5224 -2.3808 -2.7836 20 6 5.7332 -1.7257 -2.9093 21 6 5.8800 -0.7605 -3.8936 22 6 4.7988 -0.4895 -4.7186 23 6 3.6177 -1.1813 -4.5299 24 7 3.5154 -2.0966 -3.5859 25 6 1.7781 -3.1900 2.0969 26 6 0.4802 -2.8885 1.3434 27 1 -0.3634 0.5124 0.8907 28 1 -0.3634 0.5151 -0.8893 29 1 -0.3633 -1.0277 -0.0016 30 1 3.0733 1.3469 -0.1597 31 1 1.5226 1.9421 -0.7993 32 1 1.7808 1.8430 0.9590 33 1 1.4647 -0.4794 2.0454 34 1 3.0584 -0.5557 1.2564 35 1 4.0706 -2.2449 1.4646 36 1 5.5096 -2.8621 0.6180 37 1 7.0381 -0.2141 2.5356 38 1 3.7007 -4.2233 -2.0879 39 1 5.3243 -3.8507 -1.4605 40 1 6.5544 -1.9628 -2.2491 41 1 6.8143 -0.2329 -4.0155 42 1 4.8775 0.2564 -5.4956 43 1 2.7695 -0.9726 -5.1650 44 1 2.2103 -4.1835 1.9779 45 1 1.9067 -2.7358 3.0792 46 1 -0.2444 -2.2360 1.8306 47 1 0.0583 -3.6834 0.7285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602090420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:21 Heat of formation + Delta-G solvation = 26.465349 kcal Electronic energy + Delta-G solvation = -28925.319424 eV Core-core repulsion = 25301.840079 eV Total energy + Delta-G solvation = -3623.479345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40487 -40.63722 -38.45570 -36.82027 -36.39441 -34.54309 -33.22710 -32.55161 -29.54718 -28.70811 -28.38809 -27.64277 -24.94272 -24.26252 -23.91417 -23.30289 -22.93401 -22.11681 -19.36380 -18.46791 -17.73805 -17.58934 -17.05208 -16.91339 -16.51187 -16.35410 -16.17171 -15.97559 -15.63093 -15.15386 -15.09805 -14.57171 -14.30481 -14.08982 -13.99664 -13.77551 -13.57366 -13.26222 -13.23087 -12.99523 -12.81699 -12.77129 -12.70089 -12.54016 -12.51210 -12.34556 -12.16633 -11.91995 -11.60311 -11.21824 -10.87367 -10.65149 -10.52160 -10.36785 -10.20382 -9.75639 -9.28702 -9.11839 -8.07993 -6.13305 0.31052 0.55396 1.39797 1.44136 1.48477 1.94980 2.40096 2.49358 2.78837 3.15456 3.22368 3.23415 3.54762 3.79458 3.89965 3.97694 4.01768 4.09871 4.21471 4.32336 4.32675 4.38490 4.43528 4.56433 4.58973 4.63516 4.66358 4.73048 4.83405 4.87151 4.93578 4.98044 5.00469 5.03450 5.05004 5.07047 5.19841 5.25081 5.35187 5.41437 5.44452 5.82802 5.94534 5.98034 6.18789 6.23755 6.31898 6.77519 6.99778 7.30052 7.48442 7.64120 8.97200 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009304 B = 0.007799 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.754668 B = 3589.320691 C = 4642.267962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.552 5.552 3 C 0.036 3.964 4 C 0.091 3.909 5 C -0.148 4.148 6 C 0.565 3.435 7 O -0.576 6.576 8 N -0.590 5.590 9 C 0.251 3.749 10 C -0.493 4.493 11 H 0.047 0.953 12 C 0.033 3.967 13 N -0.917 5.917 14 Si 0.921 3.079 15 H -0.270 1.270 16 H -0.291 1.291 17 H -0.275 1.275 18 C 0.171 3.829 19 C 0.110 3.890 20 C -0.144 4.144 21 C -0.090 4.090 22 C -0.170 4.170 23 C 0.074 3.926 24 N -0.489 5.489 25 C -0.148 4.148 26 C -0.139 4.139 27 H 0.033 0.967 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.039 0.961 36 H 0.018 0.982 37 H 0.262 0.738 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.130 0.870 41 H 0.150 0.850 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.095 0.905 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.202 0.819 -3.906 6.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.276 5.276 3 C -0.112 4.112 4 C -0.036 4.036 5 C -0.152 4.152 6 C 0.354 3.646 7 O -0.456 6.456 8 N -0.320 5.320 9 C 0.130 3.870 10 C -0.531 4.531 11 H 0.065 0.935 12 C -0.166 4.166 13 N -0.558 5.558 14 Si 0.748 3.252 15 H -0.195 1.195 16 H -0.217 1.217 17 H -0.201 1.201 18 C 0.047 3.953 19 C -0.029 4.029 20 C -0.164 4.164 21 C -0.116 4.116 22 C -0.190 4.190 23 C -0.083 4.083 24 N -0.199 5.199 25 C -0.186 4.186 26 C -0.177 4.177 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.057 0.943 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.148 0.852 41 H 0.168 0.832 42 H 0.180 0.820 43 H 0.183 0.817 44 H 0.114 0.886 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.002 -0.058 -4.584 7.552 hybrid contribution 1.140 2.001 0.590 2.377 sum -4.862 1.943 -3.994 6.585 Atomic orbital electron populations 1.22408 0.86879 1.02122 1.00347 1.61666 1.08381 1.13574 1.43958 1.22267 1.00204 0.88719 1.00016 1.21807 1.02612 0.88886 0.90342 1.21211 1.03710 0.95458 0.94795 1.19508 0.81656 0.76176 0.87264 1.90583 1.61730 1.50447 1.42800 1.48008 1.05862 1.57942 1.20231 1.19237 0.88995 0.92712 0.86048 1.21321 1.23210 0.98777 1.09841 0.93511 1.25284 0.95242 1.00294 0.95809 1.69984 1.32167 1.36465 1.17193 0.86193 0.78068 0.83068 0.77859 1.19525 1.21708 1.20078 1.20139 0.99277 0.92544 0.83386 1.21539 0.89367 0.97456 0.94493 1.22019 0.98757 0.97323 0.98342 1.21831 1.00154 0.95807 0.93848 1.22363 0.93742 1.01479 1.01410 1.23079 0.98030 0.92205 0.94985 1.67522 1.31383 1.16506 1.04443 1.23100 1.00623 0.99467 0.95362 1.23053 0.90257 1.02599 1.01763 0.94892 0.91787 0.91506 0.93401 0.91036 0.95407 0.94023 0.88493 0.94319 0.96385 0.92850 0.90665 0.88340 0.85189 0.83188 0.82042 0.81707 0.88613 0.86703 0.86648 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.33 127.69 1.19 2.12 16 2 N -0.55 -20.45 4.70 -948.86 -4.46 -24.91 16 3 C 0.04 1.27 9.54 127.69 1.22 2.49 16 4 C 0.09 3.40 4.45 86.30 0.38 3.78 16 5 C -0.15 -5.39 0.65 -52.93 -0.03 -5.43 16 6 C 0.57 24.28 6.66 87.66 0.58 24.86 16 7 O -0.58 -27.67 16.37 -3.01 -0.05 -27.71 16 8 N -0.59 -25.17 2.45 -830.49 -2.04 -27.21 16 9 C 0.25 11.37 4.73 85.63 0.40 11.77 16 10 C -0.49 -23.66 6.27 25.60 0.16 -23.49 16 11 H 0.05 2.43 7.12 -2.91 -0.02 2.41 16 12 C 0.03 1.64 5.45 84.65 0.46 2.10 16 13 N -0.92 -47.77 13.28 21.45 0.28 -47.48 16 14 Si 0.92 40.23 29.38 68.60 2.02 42.24 16 15 H -0.27 -11.52 6.89 99.48 0.69 -10.83 16 16 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 18 C 0.17 6.77 5.71 85.64 0.49 7.26 16 19 C 0.11 4.38 5.87 42.56 0.25 4.63 16 20 C -0.14 -5.24 8.69 22.36 0.19 -5.05 16 21 C -0.09 -2.80 10.18 22.47 0.23 -2.57 16 22 C -0.17 -4.83 10.11 22.36 0.23 -4.60 16 23 C 0.07 2.46 11.18 84.67 0.95 3.41 16 24 N -0.49 -19.89 10.27 -183.88 -1.89 -21.78 16 25 C -0.15 -4.45 9.15 30.62 0.28 -4.17 16 26 C -0.14 -4.12 8.17 30.62 0.25 -3.87 16 27 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 1.84 8.13 -2.38 -0.02 1.82 16 29 H 0.07 2.10 5.91 -2.39 -0.01 2.09 16 30 H 0.05 1.96 7.63 -2.39 -0.02 1.94 16 31 H 0.07 2.23 8.08 -2.39 -0.02 2.21 16 32 H 0.03 0.89 8.13 -2.39 -0.02 0.87 16 33 H 0.04 1.39 7.99 -2.38 -0.02 1.37 16 34 H 0.10 4.26 4.23 -2.39 -0.01 4.25 16 35 H 0.04 1.80 5.20 -2.39 -0.01 1.78 16 36 H 0.02 0.87 7.97 -2.39 -0.02 0.86 16 37 H 0.26 13.27 8.32 -92.71 -0.77 12.50 16 38 H 0.08 3.05 7.49 -2.39 -0.02 3.03 16 39 H 0.10 3.48 7.85 -2.38 -0.02 3.46 16 40 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 41 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 42 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 43 H 0.17 4.52 8.06 -2.91 -0.02 4.50 16 44 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 45 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 46 H 0.12 2.86 7.89 -2.38 -0.02 2.84 16 47 H 0.09 2.85 8.03 -2.39 -0.02 2.83 16 Total: -1.00 -62.50 380.33 2.03 -60.47 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: 0.93 Total: 33.13 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 7.24 Total: 13.25 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -8.10 Total: -121.38 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.02 Total: 42.24 kcal Total: -62.50 2.03 -60.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602090420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.933 kcal (2) G-P(sol) polarization free energy of solvation -62.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds