Wall clock time and date at job start Tue Mar 31 2020 11:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46848 * 110.99918 * 2 1 4 4 C 1.53037 * 109.52381 * 174.15634 * 3 2 1 5 5 C 1.53123 * 109.27398 * 59.18254 * 4 3 2 6 6 C 1.53120 * 109.21163 * 302.31409 * 5 4 3 7 7 C 1.46845 * 111.00045 * 235.79412 * 2 1 3 8 8 H 1.09002 * 109.46112 * 65.82067 * 7 2 1 9 9 C 1.50702 * 109.45776 * 305.84412 * 7 2 1 10 10 O 1.21277 * 120.00487 * 340.00038 * 9 7 2 11 11 N 1.34783 * 119.99770 * 160.00106 * 9 7 2 12 12 C 1.46501 * 119.99624 * 0.02562 * 11 9 7 13 13 C 1.50694 * 109.47357 * 90.00294 * 12 11 9 14 14 H 1.08001 * 119.99900 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00160 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00152 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99982 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47360 * 90.00284 * 17 15 13 19 19 H 1.48498 * 109.47183 * 210.00447 * 17 15 13 20 20 H 1.48503 * 109.47012 * 330.00243 * 17 15 13 21 21 C 1.46492 * 120.00136 * 180.02562 * 11 9 7 22 22 C 1.50703 * 109.47488 * 90.00064 * 21 11 9 23 23 C 1.38223 * 119.61689 * 94.99691 * 22 21 11 24 24 C 1.38630 * 119.15655 * 179.97438 * 23 22 21 25 25 C 1.38670 * 118.42167 * 0.02562 * 24 23 22 26 26 C 1.38173 * 119.16530 * 359.97438 * 25 24 23 27 27 N 1.31852 * 119.61223 * 274.73016 * 22 21 11 28 28 H 1.09002 * 109.47105 * 56.04040 * 1 2 3 29 29 H 1.08996 * 109.47437 * 176.04524 * 1 2 3 30 30 H 1.09004 * 109.47513 * 296.04390 * 1 2 3 31 31 H 1.09006 * 109.46097 * 54.14433 * 3 2 1 32 32 H 1.08996 * 109.46972 * 294.17743 * 3 2 1 33 33 H 1.08996 * 109.50616 * 299.24564 * 4 3 2 34 34 H 1.08992 * 109.50671 * 179.12200 * 4 3 2 35 35 H 1.09002 * 109.52319 * 62.25202 * 5 4 3 36 36 H 1.08995 * 109.52318 * 182.37884 * 5 4 3 37 37 H 1.09004 * 109.49930 * 177.63007 * 6 5 4 38 38 H 1.08997 * 109.50353 * 297.74224 * 6 5 4 39 39 H 1.09006 * 109.46745 * 209.99873 * 12 11 9 40 40 H 1.08997 * 109.47462 * 329.99152 * 12 11 9 41 41 H 0.96999 * 120.00243 * 179.97438 * 16 15 13 42 42 H 1.09010 * 109.47096 * 210.00180 * 21 11 9 43 43 H 1.09009 * 109.47316 * 329.99799 * 21 11 9 44 44 H 1.08005 * 120.42221 * 359.96306 * 23 22 21 45 45 H 1.08006 * 120.78382 * 179.97438 * 24 23 22 46 46 H 1.08004 * 120.41808 * 179.97438 * 25 24 23 47 47 H 1.08005 * 119.62157 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 0.1469 5 6 4.1188 0.5370 -1.0143 6 6 3.5194 -0.8720 -1.0214 7 6 1.9953 -0.7707 -1.1338 8 1 1.7324 -0.2707 -2.0660 9 6 1.3983 -2.1544 -1.1205 10 8 0.9168 -2.5973 -0.0993 11 7 1.3997 -2.8997 -2.2435 12 6 1.9820 -2.3648 -3.4768 13 6 3.4444 -2.7233 -3.5386 14 1 3.8951 -3.2923 -2.7389 15 6 4.2072 -2.3240 -4.6155 16 7 5.4835 -2.6365 -4.6692 17 14 3.4277 -1.3393 -5.9983 18 1 3.5403 0.1106 -5.6980 19 1 4.1282 -1.6365 -7.2735 20 1 1.9949 -1.7092 -6.1228 21 6 0.8190 -4.2446 -2.2307 22 6 -0.6429 -4.1639 -2.5876 23 6 -1.0383 -4.3612 -3.8973 24 6 -2.3856 -4.2854 -4.2148 25 6 -3.2888 -4.0123 -3.1986 26 6 -2.8194 -3.8266 -1.9124 27 7 -1.5305 -3.9113 -1.6458 28 1 -0.3633 0.5741 -0.8524 29 1 -0.3634 -1.0252 -0.0709 30 1 -0.3634 0.4512 0.9233 31 1 1.5633 1.9257 0.8330 32 1 1.7325 1.8609 -0.9375 33 1 3.7813 0.8568 1.0906 34 1 3.9099 2.3512 0.1312 35 1 3.8887 1.0356 -1.9560 36 1 5.1998 0.4724 -0.8910 37 1 3.9122 -1.4302 -1.8713 38 1 3.7827 -1.3841 -0.0960 39 1 1.4665 -2.7921 -4.3370 40 1 1.8728 -1.2804 -3.4897 41 1 6.0201 -2.3559 -5.4270 42 1 1.3365 -4.8707 -2.9577 43 1 0.9269 -4.6776 -1.2362 44 1 -0.3068 -4.5715 -4.6636 45 1 -2.7236 -4.4347 -5.2297 46 1 -4.3459 -3.9456 -3.4099 47 1 -3.5164 -3.6140 -1.1153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602091896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:31 Heat of formation + Delta-G solvation = 13.598189 kcal Electronic energy + Delta-G solvation = -28255.607208 eV Core-core repulsion = 24631.569900 eV Total energy + Delta-G solvation = -3624.037307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.25180 -39.59094 -37.45540 -35.26476 -33.01461 -32.87856 -32.27907 -31.71746 -30.42894 -28.21249 -26.81655 -25.97257 -23.39722 -23.38724 -22.63314 -22.31306 -21.61102 -19.56629 -18.25154 -17.18052 -16.71921 -16.43282 -16.02717 -15.74340 -15.39816 -14.93542 -14.53004 -14.46179 -14.10177 -13.95069 -13.52336 -13.48054 -13.20477 -12.99186 -12.76243 -12.54536 -12.44282 -12.15085 -12.08221 -11.76411 -11.50511 -11.41526 -11.24532 -11.03314 -10.85620 -10.66966 -10.47202 -10.31361 -10.17513 -9.92717 -9.75128 -9.56748 -9.20756 -9.03277 -8.77013 -8.65465 -7.88468 -7.78381 -6.28586 -4.28336 1.20591 1.42501 3.11126 3.19047 3.21677 3.39878 3.59883 4.08931 4.19882 4.43305 4.53736 4.88477 4.93856 5.00589 5.15252 5.17081 5.20908 5.27932 5.31194 5.51759 5.60226 5.67920 5.70203 5.75303 5.79568 5.89394 5.90653 5.94149 6.05383 6.17626 6.19077 6.26128 6.31075 6.33713 6.35711 6.40441 6.46441 6.59447 6.61951 6.83027 6.85850 7.15448 7.25650 7.37933 7.41876 7.51299 8.09789 8.23608 8.37225 8.76590 9.01832 9.30684 10.82944 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009478 B = 0.006622 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.610576 B = 4227.007182 C = 6301.425452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.522 5.522 3 C 0.059 3.941 4 C -0.118 4.118 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.080 3.920 8 H 0.056 0.944 9 C 0.525 3.475 10 O -0.529 6.529 11 N -0.589 5.589 12 C 0.207 3.793 13 C -0.538 4.538 14 H 0.085 0.915 15 C 0.081 3.919 16 N -0.884 5.884 17 Si 0.864 3.136 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.265 1.265 21 C 0.168 3.832 22 C 0.120 3.880 23 C -0.160 4.160 24 C -0.081 4.081 25 C -0.182 4.182 26 C 0.093 3.907 27 N -0.457 5.457 28 H 0.011 0.989 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.127 0.873 38 H 0.063 0.937 39 H 0.032 0.968 40 H 0.028 0.972 41 H 0.267 0.733 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.584 2.968 1.680 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.247 5.247 3 C -0.069 4.069 4 C -0.156 4.156 5 C -0.153 4.153 6 C -0.163 4.163 7 C -0.031 4.031 8 H 0.073 0.927 9 C 0.313 3.687 10 O -0.406 6.406 11 N -0.321 5.321 12 C 0.086 3.914 13 C -0.576 4.576 14 H 0.103 0.897 15 C -0.123 4.123 16 N -0.521 5.521 17 Si 0.691 3.309 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.190 1.190 21 C 0.044 3.956 22 C -0.019 4.019 23 C -0.180 4.180 24 C -0.107 4.107 25 C -0.202 4.202 26 C -0.064 4.064 27 N -0.166 5.166 28 H 0.029 0.971 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.145 0.855 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.077 0.923 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.154 0.846 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.196 2.644 3.395 11.994 hybrid contribution -0.986 0.973 -2.716 3.049 sum -12.181 3.617 0.679 12.725 Atomic orbital electron populations 1.22544 0.87447 1.03733 0.99339 1.61652 1.07557 1.12526 1.42951 1.22077 0.95942 0.89037 0.99809 1.21634 0.94257 0.99716 0.99951 1.21515 1.00015 0.96081 0.97648 1.21997 0.90800 0.97766 1.05704 1.21565 0.97394 0.91895 0.92231 0.92686 1.20248 0.78449 0.87093 0.82958 1.90621 1.45842 1.72610 1.31512 1.47840 1.57614 1.14902 1.11707 1.19863 0.94973 0.94400 0.82189 1.21315 0.91774 1.36757 1.07751 0.89689 1.24828 0.94613 0.95348 0.97536 1.69875 1.05992 1.45235 1.30985 0.87033 0.80110 0.81227 0.82567 1.19857 1.20812 1.18979 1.20138 0.85656 0.85790 1.04043 1.21951 0.96948 0.93761 0.89242 1.22120 0.96745 1.01364 0.97772 1.21544 0.93211 0.96446 0.99512 1.22093 1.00647 1.02853 0.94627 1.22787 0.92401 0.95768 0.95493 1.67672 1.02050 1.10335 1.36550 0.97077 0.89134 0.91966 0.91102 0.95434 0.91227 0.92124 0.92467 0.91630 0.85518 0.91864 0.95052 0.95467 0.92266 0.88494 0.88791 0.84571 0.85172 0.85322 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.20 60.06 0.55 0.85 16 2 N -0.52 -9.34 4.51 -236.24 -1.07 -10.41 16 3 C 0.06 0.89 5.46 -3.83 -0.02 0.87 16 4 C -0.12 -1.69 6.09 -26.65 -0.16 -1.86 16 5 C -0.11 -1.91 6.00 -26.61 -0.16 -2.07 16 6 C -0.13 -2.45 5.29 -26.58 -0.14 -2.59 16 7 C 0.08 1.56 1.51 -68.81 -0.10 1.46 16 8 H 0.06 1.10 6.31 -51.93 -0.33 0.77 16 9 C 0.53 11.07 6.01 -10.98 -0.07 11.00 16 10 O -0.53 -12.12 14.18 5.56 0.08 -12.04 16 11 N -0.59 -11.98 2.44 -176.43 -0.43 -12.41 16 12 C 0.21 4.41 3.95 -5.20 -0.02 4.39 16 13 C -0.54 -13.14 7.19 -34.44 -0.25 -13.39 16 14 H 0.09 2.32 7.80 -52.49 -0.41 1.91 16 15 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.88 -24.22 13.96 55.43 0.77 -23.44 16 17 Si 0.86 19.02 27.47 -169.99 -4.67 14.35 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.27 -5.55 6.54 56.52 0.37 -5.18 16 21 C 0.17 3.07 5.71 -5.20 -0.03 3.04 16 22 C 0.12 2.03 6.36 -82.59 -0.53 1.50 16 23 C -0.16 -2.30 9.72 -39.44 -0.38 -2.69 16 24 C -0.08 -0.98 10.18 -39.28 -0.40 -1.38 16 25 C -0.18 -2.11 10.11 -39.45 -0.40 -2.51 16 26 C 0.09 1.28 11.18 -17.55 -0.20 1.08 16 27 N -0.46 -7.88 10.27 -9.47 -0.10 -7.98 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 1.76 5.44 -51.93 -0.28 1.48 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.13 2.84 4.55 -51.93 -0.24 2.60 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 40 H 0.03 0.59 5.37 -51.93 -0.28 0.31 16 41 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.10 1.64 7.97 -51.92 -0.41 1.23 16 43 H 0.09 1.81 7.42 -51.92 -0.39 1.43 16 44 H 0.14 1.82 8.06 -52.48 -0.42 1.39 16 45 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 46 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 47 H 0.15 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -29.36 368.83 -9.62 -38.98 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.37 Total: 7.73 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.40 Total: -0.33 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.82 Total: -54.24 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.67 Total: 14.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.36 -9.62 -38.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602091896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.578 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds