Wall clock time and date at job start Tue Mar 31 2020 11:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46848 * 110.99918 * 2 1 4 4 C 1.53037 * 109.52381 * 174.15634 * 3 2 1 5 5 C 1.53123 * 109.27398 * 59.18254 * 4 3 2 6 6 C 1.53120 * 109.21163 * 302.31409 * 5 4 3 7 7 C 1.46845 * 111.00045 * 235.79412 * 2 1 3 8 8 H 1.09002 * 109.46112 * 65.82067 * 7 2 1 9 9 C 1.50702 * 109.45776 * 305.84412 * 7 2 1 10 10 O 1.21277 * 120.00487 * 340.00038 * 9 7 2 11 11 N 1.34783 * 119.99770 * 160.00106 * 9 7 2 12 12 C 1.46501 * 119.99624 * 0.02562 * 11 9 7 13 13 C 1.50694 * 109.47357 * 90.00294 * 12 11 9 14 14 H 1.08001 * 119.99900 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00160 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00152 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99982 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47360 * 90.00284 * 17 15 13 19 19 H 1.48498 * 109.47183 * 210.00447 * 17 15 13 20 20 H 1.48503 * 109.47012 * 330.00243 * 17 15 13 21 21 C 1.46492 * 120.00136 * 180.02562 * 11 9 7 22 22 C 1.50703 * 109.47488 * 90.00064 * 21 11 9 23 23 C 1.38223 * 119.61689 * 94.99691 * 22 21 11 24 24 C 1.38630 * 119.15655 * 179.97438 * 23 22 21 25 25 C 1.38670 * 118.42167 * 0.02562 * 24 23 22 26 26 C 1.38173 * 119.16530 * 359.97438 * 25 24 23 27 27 N 1.31852 * 119.61223 * 274.73016 * 22 21 11 28 28 H 1.09002 * 109.47105 * 56.04040 * 1 2 3 29 29 H 1.08996 * 109.47437 * 176.04524 * 1 2 3 30 30 H 1.09004 * 109.47513 * 296.04390 * 1 2 3 31 31 H 1.09006 * 109.46097 * 54.14433 * 3 2 1 32 32 H 1.08996 * 109.46972 * 294.17743 * 3 2 1 33 33 H 1.08996 * 109.50616 * 299.24564 * 4 3 2 34 34 H 1.08992 * 109.50671 * 179.12200 * 4 3 2 35 35 H 1.09002 * 109.52319 * 62.25202 * 5 4 3 36 36 H 1.08995 * 109.52318 * 182.37884 * 5 4 3 37 37 H 1.09004 * 109.49930 * 177.63007 * 6 5 4 38 38 H 1.08997 * 109.50353 * 297.74224 * 6 5 4 39 39 H 1.09006 * 109.46745 * 209.99873 * 12 11 9 40 40 H 1.08997 * 109.47462 * 329.99152 * 12 11 9 41 41 H 0.96999 * 120.00243 * 179.97438 * 16 15 13 42 42 H 1.09010 * 109.47096 * 210.00180 * 21 11 9 43 43 H 1.09009 * 109.47316 * 329.99799 * 21 11 9 44 44 H 1.08005 * 120.42221 * 359.96306 * 23 22 21 45 45 H 1.08006 * 120.78382 * 179.97438 * 24 23 22 46 46 H 1.08004 * 120.41808 * 179.97438 * 25 24 23 47 47 H 1.08005 * 119.62157 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 0.1469 5 6 4.1188 0.5370 -1.0143 6 6 3.5194 -0.8720 -1.0214 7 6 1.9953 -0.7707 -1.1338 8 1 1.7324 -0.2707 -2.0660 9 6 1.3983 -2.1544 -1.1205 10 8 0.9168 -2.5973 -0.0993 11 7 1.3997 -2.8997 -2.2435 12 6 1.9820 -2.3648 -3.4768 13 6 3.4444 -2.7233 -3.5386 14 1 3.8951 -3.2923 -2.7389 15 6 4.2072 -2.3240 -4.6155 16 7 5.4835 -2.6365 -4.6692 17 14 3.4277 -1.3393 -5.9983 18 1 3.5403 0.1106 -5.6980 19 1 4.1282 -1.6365 -7.2735 20 1 1.9949 -1.7092 -6.1228 21 6 0.8190 -4.2446 -2.2307 22 6 -0.6429 -4.1639 -2.5876 23 6 -1.0383 -4.3612 -3.8973 24 6 -2.3856 -4.2854 -4.2148 25 6 -3.2888 -4.0123 -3.1986 26 6 -2.8194 -3.8266 -1.9124 27 7 -1.5305 -3.9113 -1.6458 28 1 -0.3633 0.5741 -0.8524 29 1 -0.3634 -1.0252 -0.0709 30 1 -0.3634 0.4512 0.9233 31 1 1.5633 1.9257 0.8330 32 1 1.7325 1.8609 -0.9375 33 1 3.7813 0.8568 1.0906 34 1 3.9099 2.3512 0.1312 35 1 3.8887 1.0356 -1.9560 36 1 5.1998 0.4724 -0.8910 37 1 3.9122 -1.4302 -1.8713 38 1 3.7827 -1.3841 -0.0960 39 1 1.4665 -2.7921 -4.3370 40 1 1.8728 -1.2804 -3.4897 41 1 6.0201 -2.3559 -5.4270 42 1 1.3365 -4.8707 -2.9577 43 1 0.9269 -4.6776 -1.2362 44 1 -0.3068 -4.5715 -4.6636 45 1 -2.7236 -4.4347 -5.2297 46 1 -4.3459 -3.9456 -3.4099 47 1 -3.5164 -3.6140 -1.1153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602091896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:29 Heat of formation + Delta-G solvation = -4.792334 kcal Electronic energy + Delta-G solvation = -28256.404680 eV Core-core repulsion = 24631.569900 eV Total energy + Delta-G solvation = -3624.834780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.64200 -40.85799 -38.90006 -36.94760 -34.69160 -34.34536 -33.46109 -33.04530 -31.75796 -29.96549 -28.20822 -27.35357 -24.85074 -24.59383 -24.15705 -23.72714 -22.85643 -20.93100 -19.86523 -19.03515 -18.16925 -17.71664 -17.42368 -17.00940 -16.62456 -16.33690 -16.15394 -15.85612 -15.59077 -15.31783 -15.06108 -14.70969 -14.49566 -14.37092 -14.09616 -14.00150 -13.79330 -13.70154 -13.58754 -13.21658 -12.95726 -12.77412 -12.61944 -12.57350 -12.45772 -12.21872 -12.07078 -11.81657 -11.63820 -11.58199 -11.19693 -10.80062 -10.71327 -10.46513 -10.33648 -9.93349 -9.43928 -9.26457 -8.26413 -6.30236 0.13350 0.41250 1.37873 1.40702 1.48152 1.75304 2.14367 2.34485 2.90762 3.05079 3.08296 3.39139 3.59753 3.85106 3.92145 3.98129 4.02946 4.07412 4.18107 4.23101 4.26611 4.33184 4.43483 4.51132 4.56052 4.60226 4.65051 4.68490 4.75576 4.79035 4.84031 4.86726 4.87339 5.01056 5.08013 5.11144 5.23514 5.25052 5.27597 5.42884 5.46066 5.52691 5.64655 5.81821 5.98377 6.18179 6.22364 6.60412 6.72914 7.15264 7.27976 7.40063 8.88581 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009478 B = 0.006622 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.610576 B = 4227.007182 C = 6301.425452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.536 5.536 3 C 0.056 3.944 4 C -0.110 4.110 5 C -0.113 4.113 6 C -0.120 4.120 7 C 0.088 3.912 8 H 0.052 0.948 9 C 0.519 3.481 10 O -0.553 6.553 11 N -0.591 5.591 12 C 0.219 3.781 13 C -0.526 4.526 14 H 0.041 0.959 15 C 0.032 3.968 16 N -0.932 5.932 17 Si 0.924 3.076 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.242 1.242 21 C 0.168 3.832 22 C 0.095 3.905 23 C -0.167 4.167 24 C -0.077 4.077 25 C -0.165 4.165 26 C 0.078 3.922 27 N -0.497 5.497 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.034 0.966 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.033 0.967 41 H 0.268 0.732 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.143 0.857 45 H 0.167 0.833 46 H 0.170 0.830 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.451 5.004 0.366 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.262 5.262 3 C -0.071 4.071 4 C -0.148 4.148 5 C -0.150 4.150 6 C -0.158 4.158 7 C -0.024 4.024 8 H 0.069 0.931 9 C 0.307 3.693 10 O -0.432 6.432 11 N -0.322 5.322 12 C 0.097 3.903 13 C -0.564 4.564 14 H 0.059 0.941 15 C -0.168 4.168 16 N -0.571 5.571 17 Si 0.747 3.253 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.165 1.165 21 C 0.044 3.956 22 C -0.043 4.043 23 C -0.188 4.188 24 C -0.102 4.102 25 C -0.184 4.184 26 C -0.079 4.079 27 N -0.207 5.207 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.119 0.881 43 H 0.090 0.910 44 H 0.161 0.839 45 H 0.184 0.816 46 H 0.187 0.813 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -14.082 4.673 2.083 14.983 hybrid contribution -0.139 0.250 -2.211 2.230 sum -14.221 4.923 -0.128 15.049 Atomic orbital electron populations 1.22448 0.86842 1.02200 1.00870 1.61666 1.08254 1.14288 1.41978 1.22235 0.96169 0.87452 1.01205 1.21609 0.93940 1.00941 0.98314 1.21506 1.00222 0.94330 0.98977 1.21819 0.91386 0.99385 1.03178 1.21431 0.96866 0.91199 0.92884 0.93067 1.20624 0.78085 0.87849 0.82726 1.90595 1.46965 1.73381 1.32253 1.47888 1.57409 1.15607 1.11291 1.19664 0.92911 0.94664 0.83049 1.21296 0.93378 1.35482 1.06281 0.94103 1.25556 0.94813 0.96401 1.00032 1.70020 1.07744 1.47268 1.32078 0.86065 0.80347 0.79822 0.79036 1.19154 1.20975 1.16530 1.20128 0.87765 0.84738 1.02935 1.21587 0.95649 0.96560 0.90543 1.22233 0.98450 1.01417 0.96655 1.21983 0.91977 0.94865 1.01409 1.22517 1.02611 1.00037 0.93274 1.23255 0.91446 0.95707 0.97500 1.67546 1.03774 1.11734 1.37675 0.96047 0.92130 0.89806 0.88558 0.94763 0.91652 0.88863 0.92430 0.91315 0.88838 0.93584 0.93701 0.94953 0.92279 0.88087 0.91037 0.83938 0.81556 0.81270 0.81218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.79 9.20 127.69 1.18 1.97 16 2 N -0.54 -18.78 4.51 -901.33 -4.06 -22.84 16 3 C 0.06 1.55 5.46 86.33 0.47 2.02 16 4 C -0.11 -2.94 6.09 30.65 0.19 -2.75 16 5 C -0.11 -3.70 6.00 30.68 0.18 -3.52 16 6 C -0.12 -4.86 5.29 30.69 0.16 -4.70 16 7 C 0.09 3.46 1.51 44.24 0.07 3.53 16 8 H 0.05 2.05 6.31 -2.39 -0.02 2.03 16 9 C 0.52 22.75 6.01 87.66 0.53 23.27 16 10 O -0.55 -26.57 14.18 -3.02 -0.04 -26.61 16 11 N -0.59 -24.96 2.44 -830.49 -2.03 -26.99 16 12 C 0.22 9.42 3.95 85.63 0.34 9.76 16 13 C -0.53 -26.71 7.19 25.60 0.18 -26.52 16 14 H 0.04 2.40 7.80 -2.91 -0.02 2.38 16 15 C 0.03 1.66 5.47 84.66 0.46 2.12 16 16 N -0.93 -52.85 13.96 21.45 0.30 -52.55 16 17 Si 0.92 38.60 27.47 68.60 1.88 40.48 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 19 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 21 C 0.17 6.48 5.71 85.64 0.49 6.97 16 22 C 0.09 3.23 6.36 42.55 0.27 3.50 16 23 C -0.17 -4.58 9.72 22.36 0.22 -4.36 16 24 C -0.08 -1.58 10.18 22.47 0.23 -1.35 16 25 C -0.16 -3.21 10.11 22.36 0.23 -2.99 16 26 C 0.08 2.02 11.18 84.67 0.95 2.96 16 27 N -0.50 -17.26 10.27 -183.89 -1.89 -19.15 16 28 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 2.37 5.44 -2.39 -0.01 2.36 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.10 2.18 8.12 -2.38 -0.02 2.17 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.09 4.44 4.55 -2.39 -0.01 4.43 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 1.83 7.13 -2.38 -0.02 1.81 16 40 H 0.03 1.38 5.37 -2.39 -0.01 1.37 16 41 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.10 3.65 7.97 -2.38 -0.02 3.63 16 43 H 0.07 3.01 7.42 -2.38 -0.02 2.99 16 44 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 45 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 47 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -67.52 368.83 1.20 -66.32 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.90 Total: 31.42 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 6.14 Total: 9.91 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -7.68 Total: -121.53 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.04 Total: -26.61 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.88 Total: 40.48 kcal Total: -67.52 1.20 -66.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602091896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.530 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds