Wall clock time and date at job start Tue Mar 31 2020 11:15:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46848 * 110.99918 * 2 1
4 4 C 1.53037 * 109.52381 * 174.15634 * 3 2 1
5 5 C 1.53123 * 109.27398 * 59.18254 * 4 3 2
6 6 C 1.53120 * 109.21163 * 302.31409 * 5 4 3
7 7 C 1.46845 * 111.00045 * 235.79412 * 2 1 3
8 8 H 1.09002 * 109.46112 * 65.82067 * 7 2 1
9 9 C 1.50702 * 109.45776 * 305.84412 * 7 2 1
10 10 O 1.21277 * 120.00487 * 340.00038 * 9 7 2
11 11 N 1.34783 * 119.99770 * 160.00106 * 9 7 2
12 12 C 1.46501 * 119.99624 * 0.02562 * 11 9 7
13 13 C 1.50694 * 109.47357 * 90.00294 * 12 11 9
14 14 H 1.08001 * 119.99900 * 359.97438 * 13 12 11
15 15 C 1.37880 * 120.00160 * 180.02562 * 13 12 11
16 16 N 1.31510 * 120.00152 * 179.97438 * 15 13 12
17 17 Si 1.86800 * 119.99982 * 359.97438 * 15 13 12
18 18 H 1.48496 * 109.47360 * 90.00284 * 17 15 13
19 19 H 1.48498 * 109.47183 * 210.00447 * 17 15 13
20 20 H 1.48503 * 109.47012 * 330.00243 * 17 15 13
21 21 C 1.46492 * 120.00136 * 180.02562 * 11 9 7
22 22 C 1.50703 * 109.47488 * 90.00064 * 21 11 9
23 23 C 1.38223 * 119.61689 * 94.99691 * 22 21 11
24 24 C 1.38630 * 119.15655 * 179.97438 * 23 22 21
25 25 C 1.38670 * 118.42167 * 0.02562 * 24 23 22
26 26 C 1.38173 * 119.16530 * 359.97438 * 25 24 23
27 27 N 1.31852 * 119.61223 * 274.73016 * 22 21 11
28 28 H 1.09002 * 109.47105 * 56.04040 * 1 2 3
29 29 H 1.08996 * 109.47437 * 176.04524 * 1 2 3
30 30 H 1.09004 * 109.47513 * 296.04390 * 1 2 3
31 31 H 1.09006 * 109.46097 * 54.14433 * 3 2 1
32 32 H 1.08996 * 109.46972 * 294.17743 * 3 2 1
33 33 H 1.08996 * 109.50616 * 299.24564 * 4 3 2
34 34 H 1.08992 * 109.50671 * 179.12200 * 4 3 2
35 35 H 1.09002 * 109.52319 * 62.25202 * 5 4 3
36 36 H 1.08995 * 109.52318 * 182.37884 * 5 4 3
37 37 H 1.09004 * 109.49930 * 177.63007 * 6 5 4
38 38 H 1.08997 * 109.50353 * 297.74224 * 6 5 4
39 39 H 1.09006 * 109.46745 * 209.99873 * 12 11 9
40 40 H 1.08997 * 109.47462 * 329.99152 * 12 11 9
41 41 H 0.96999 * 120.00243 * 179.97438 * 16 15 13
42 42 H 1.09010 * 109.47096 * 210.00180 * 21 11 9
43 43 H 1.09009 * 109.47316 * 329.99799 * 21 11 9
44 44 H 1.08005 * 120.42221 * 359.96306 * 23 22 21
45 45 H 1.08006 * 120.78382 * 179.97438 * 24 23 22
46 46 H 1.08004 * 120.41808 * 179.97438 * 25 24 23
47 47 H 1.08005 * 119.62157 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9952 1.3710 0.0000
4 6 3.5181 1.3342 0.1469
5 6 4.1188 0.5370 -1.0143
6 6 3.5194 -0.8720 -1.0214
7 6 1.9953 -0.7707 -1.1338
8 1 1.7324 -0.2707 -2.0660
9 6 1.3983 -2.1544 -1.1205
10 8 0.9168 -2.5973 -0.0993
11 7 1.3997 -2.8997 -2.2435
12 6 1.9820 -2.3648 -3.4768
13 6 3.4444 -2.7233 -3.5386
14 1 3.8951 -3.2923 -2.7389
15 6 4.2072 -2.3240 -4.6155
16 7 5.4835 -2.6365 -4.6692
17 14 3.4277 -1.3393 -5.9983
18 1 3.5403 0.1106 -5.6980
19 1 4.1282 -1.6365 -7.2735
20 1 1.9949 -1.7092 -6.1228
21 6 0.8190 -4.2446 -2.2307
22 6 -0.6429 -4.1639 -2.5876
23 6 -1.0383 -4.3612 -3.8973
24 6 -2.3856 -4.2854 -4.2148
25 6 -3.2888 -4.0123 -3.1986
26 6 -2.8194 -3.8266 -1.9124
27 7 -1.5305 -3.9113 -1.6458
28 1 -0.3633 0.5741 -0.8524
29 1 -0.3634 -1.0252 -0.0709
30 1 -0.3634 0.4512 0.9233
31 1 1.5633 1.9257 0.8330
32 1 1.7325 1.8609 -0.9375
33 1 3.7813 0.8568 1.0906
34 1 3.9099 2.3512 0.1312
35 1 3.8887 1.0356 -1.9560
36 1 5.1998 0.4724 -0.8910
37 1 3.9122 -1.4302 -1.8713
38 1 3.7827 -1.3841 -0.0960
39 1 1.4665 -2.7921 -4.3370
40 1 1.8728 -1.2804 -3.4897
41 1 6.0201 -2.3559 -5.4270
42 1 1.3365 -4.8707 -2.9577
43 1 0.9269 -4.6776 -1.2362
44 1 -0.3068 -4.5715 -4.6636
45 1 -2.7236 -4.4347 -5.2297
46 1 -4.3459 -3.9456 -3.4099
47 1 -3.5164 -3.6140 -1.1153
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602091896.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:15:29
Heat of formation + Delta-G solvation = -4.792334 kcal
Electronic energy + Delta-G solvation = -28256.404680 eV
Core-core repulsion = 24631.569900 eV
Total energy + Delta-G solvation = -3624.834780 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 1.31 seconds
Orbital eigenvalues (eV)
-41.64200 -40.85799 -38.90006 -36.94760 -34.69160 -34.34536 -33.46109 -33.04530
-31.75796 -29.96549 -28.20822 -27.35357 -24.85074 -24.59383 -24.15705 -23.72714
-22.85643 -20.93100 -19.86523 -19.03515 -18.16925 -17.71664 -17.42368 -17.00940
-16.62456 -16.33690 -16.15394 -15.85612 -15.59077 -15.31783 -15.06108 -14.70969
-14.49566 -14.37092 -14.09616 -14.00150 -13.79330 -13.70154 -13.58754 -13.21658
-12.95726 -12.77412 -12.61944 -12.57350 -12.45772 -12.21872 -12.07078 -11.81657
-11.63820 -11.58199 -11.19693 -10.80062 -10.71327 -10.46513 -10.33648 -9.93349
-9.43928 -9.26457 -8.26413 -6.30236 0.13350 0.41250 1.37873 1.40702
1.48152 1.75304 2.14367 2.34485 2.90762 3.05079 3.08296 3.39139
3.59753 3.85106 3.92145 3.98129 4.02946 4.07412 4.18107 4.23101
4.26611 4.33184 4.43483 4.51132 4.56052 4.60226 4.65051 4.68490
4.75576 4.79035 4.84031 4.86726 4.87339 5.01056 5.08013 5.11144
5.23514 5.25052 5.27597 5.42884 5.46066 5.52691 5.64655 5.81821
5.98377 6.18179 6.22364 6.60412 6.72914 7.15264 7.27976 7.40063
8.88581
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.009478 B = 0.006622 C = 0.004442
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2953.610576 B = 4227.007182 C = 6301.425452
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.536 5.536
3 C 0.056 3.944
4 C -0.110 4.110
5 C -0.113 4.113
6 C -0.120 4.120
7 C 0.088 3.912
8 H 0.052 0.948
9 C 0.519 3.481
10 O -0.553 6.553
11 N -0.591 5.591
12 C 0.219 3.781
13 C -0.526 4.526
14 H 0.041 0.959
15 C 0.032 3.968
16 N -0.932 5.932
17 Si 0.924 3.076
18 H -0.267 1.267
19 H -0.284 1.284
20 H -0.242 1.242
21 C 0.168 3.832
22 C 0.095 3.905
23 C -0.167 4.167
24 C -0.077 4.077
25 C -0.165 4.165
26 C 0.078 3.922
27 N -0.497 5.497
28 H 0.021 0.979
29 H 0.060 0.940
30 H 0.083 0.917
31 H 0.096 0.904
32 H 0.034 0.966
33 H 0.065 0.935
34 H 0.093 0.907
35 H 0.057 0.943
36 H 0.068 0.932
37 H 0.093 0.907
38 H 0.045 0.955
39 H 0.045 0.955
40 H 0.033 0.967
41 H 0.268 0.732
42 H 0.101 0.899
43 H 0.071 0.929
44 H 0.143 0.857
45 H 0.167 0.833
46 H 0.170 0.830
47 H 0.171 0.829
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.451 5.004 0.366 15.297
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.262 5.262
3 C -0.071 4.071
4 C -0.148 4.148
5 C -0.150 4.150
6 C -0.158 4.158
7 C -0.024 4.024
8 H 0.069 0.931
9 C 0.307 3.693
10 O -0.432 6.432
11 N -0.322 5.322
12 C 0.097 3.903
13 C -0.564 4.564
14 H 0.059 0.941
15 C -0.168 4.168
16 N -0.571 5.571
17 Si 0.747 3.253
18 H -0.192 1.192
19 H -0.210 1.210
20 H -0.165 1.165
21 C 0.044 3.956
22 C -0.043 4.043
23 C -0.188 4.188
24 C -0.102 4.102
25 C -0.184 4.184
26 C -0.079 4.079
27 N -0.207 5.207
28 H 0.040 0.960
29 H 0.079 0.921
30 H 0.102 0.898
31 H 0.114 0.886
32 H 0.052 0.948
33 H 0.083 0.917
34 H 0.111 0.889
35 H 0.076 0.924
36 H 0.087 0.913
37 H 0.112 0.888
38 H 0.064 0.936
39 H 0.063 0.937
40 H 0.050 0.950
41 H 0.077 0.923
42 H 0.119 0.881
43 H 0.090 0.910
44 H 0.161 0.839
45 H 0.184 0.816
46 H 0.187 0.813
47 H 0.188 0.812
Dipole moment (debyes) X Y Z Total
from point charges -14.082 4.673 2.083 14.983
hybrid contribution -0.139 0.250 -2.211 2.230
sum -14.221 4.923 -0.128 15.049
Atomic orbital electron populations
1.22448 0.86842 1.02200 1.00870 1.61666 1.08254 1.14288 1.41978
1.22235 0.96169 0.87452 1.01205 1.21609 0.93940 1.00941 0.98314
1.21506 1.00222 0.94330 0.98977 1.21819 0.91386 0.99385 1.03178
1.21431 0.96866 0.91199 0.92884 0.93067 1.20624 0.78085 0.87849
0.82726 1.90595 1.46965 1.73381 1.32253 1.47888 1.57409 1.15607
1.11291 1.19664 0.92911 0.94664 0.83049 1.21296 0.93378 1.35482
1.06281 0.94103 1.25556 0.94813 0.96401 1.00032 1.70020 1.07744
1.47268 1.32078 0.86065 0.80347 0.79822 0.79036 1.19154 1.20975
1.16530 1.20128 0.87765 0.84738 1.02935 1.21587 0.95649 0.96560
0.90543 1.22233 0.98450 1.01417 0.96655 1.21983 0.91977 0.94865
1.01409 1.22517 1.02611 1.00037 0.93274 1.23255 0.91446 0.95707
0.97500 1.67546 1.03774 1.11734 1.37675 0.96047 0.92130 0.89806
0.88558 0.94763 0.91652 0.88863 0.92430 0.91315 0.88838 0.93584
0.93701 0.94953 0.92279 0.88087 0.91037 0.83938 0.81556 0.81270
0.81218
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.79 9.20 127.69 1.18 1.97 16
2 N -0.54 -18.78 4.51 -901.33 -4.06 -22.84 16
3 C 0.06 1.55 5.46 86.33 0.47 2.02 16
4 C -0.11 -2.94 6.09 30.65 0.19 -2.75 16
5 C -0.11 -3.70 6.00 30.68 0.18 -3.52 16
6 C -0.12 -4.86 5.29 30.69 0.16 -4.70 16
7 C 0.09 3.46 1.51 44.24 0.07 3.53 16
8 H 0.05 2.05 6.31 -2.39 -0.02 2.03 16
9 C 0.52 22.75 6.01 87.66 0.53 23.27 16
10 O -0.55 -26.57 14.18 -3.02 -0.04 -26.61 16
11 N -0.59 -24.96 2.44 -830.49 -2.03 -26.99 16
12 C 0.22 9.42 3.95 85.63 0.34 9.76 16
13 C -0.53 -26.71 7.19 25.60 0.18 -26.52 16
14 H 0.04 2.40 7.80 -2.91 -0.02 2.38 16
15 C 0.03 1.66 5.47 84.66 0.46 2.12 16
16 N -0.93 -52.85 13.96 21.45 0.30 -52.55 16
17 Si 0.92 38.60 27.47 68.60 1.88 40.48 16
18 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16
19 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16
20 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16
21 C 0.17 6.48 5.71 85.64 0.49 6.97 16
22 C 0.09 3.23 6.36 42.55 0.27 3.50 16
23 C -0.17 -4.58 9.72 22.36 0.22 -4.36 16
24 C -0.08 -1.58 10.18 22.47 0.23 -1.35 16
25 C -0.16 -3.21 10.11 22.36 0.23 -2.99 16
26 C 0.08 2.02 11.18 84.67 0.95 2.96 16
27 N -0.50 -17.26 10.27 -183.89 -1.89 -19.15 16
28 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16
29 H 0.06 2.37 5.44 -2.39 -0.01 2.36 16
30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16
31 H 0.10 2.18 8.12 -2.38 -0.02 2.17 16
32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16
33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16
35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16
36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
37 H 0.09 4.44 4.55 -2.39 -0.01 4.43 16
38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16
39 H 0.05 1.83 7.13 -2.38 -0.02 1.81 16
40 H 0.03 1.38 5.37 -2.39 -0.01 1.37 16
41 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16
42 H 0.10 3.65 7.97 -2.38 -0.02 3.63 16
43 H 0.07 3.01 7.42 -2.38 -0.02 2.99 16
44 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16
45 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16
46 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16
47 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16
Total: -1.00 -67.52 368.83 1.20 -66.32
By element:
Atomic # 1 Polarization: 30.53 SS G_CDS: 0.90 Total: 31.42 kcal
Atomic # 6 Polarization: 3.78 SS G_CDS: 6.14 Total: 9.91 kcal
Atomic # 7 Polarization: -113.85 SS G_CDS: -7.68 Total: -121.53 kcal
Atomic # 8 Polarization: -26.57 SS G_CDS: -0.04 Total: -26.61 kcal
Atomic # 14 Polarization: 38.60 SS G_CDS: 1.88 Total: 40.48 kcal
Total: -67.52 1.20 -66.32 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602091896.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.530 kcal
(2) G-P(sol) polarization free energy of solvation -67.518 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.988 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.322 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.792 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.31 seconds