Wall clock time and date at job start Tue Mar 31 2020 11:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00221 * 2 1 4 4 C 1.50700 * 109.47257 * 269.99918 * 3 2 1 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99675 * 180.27849 * 4 3 2 7 7 C 1.47079 * 120.88183 * 359.44105 * 6 4 3 8 8 C 1.53702 * 108.27100 * 128.75969 * 7 6 4 9 9 N 1.46903 * 109.25750 * 54.08389 * 8 7 6 10 10 C 1.46895 * 110.99692 * 172.60684 * 9 8 7 11 11 C 1.50705 * 109.47164 * 294.29851 * 10 9 8 12 12 H 1.07997 * 119.99840 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99848 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00056 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00070 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46730 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47357 * 119.99475 * 15 13 11 18 18 H 1.48501 * 109.46878 * 240.00173 * 15 13 11 19 19 C 1.46897 * 111.26549 * 296.75556 * 9 8 7 20 20 C 1.47082 * 120.87981 * 179.72731 * 6 4 3 21 21 C 1.39681 * 119.99540 * 180.02562 * 2 1 3 22 22 C 1.38908 * 120.07059 * 179.72289 * 21 2 1 23 23 C 1.38110 * 119.92452 * 179.77100 * 22 21 2 24 24 C 1.38289 * 120.06778 * 0.50449 * 23 22 21 25 25 C 1.38283 * 120.15541 * 359.75104 * 24 23 22 26 26 C 1.38100 * 120.07164 * 359.97438 * 25 24 23 27 27 H 1.09008 * 109.47294 * 89.99420 * 1 2 3 28 28 H 1.08999 * 109.47518 * 209.99466 * 1 2 3 29 29 H 1.09002 * 109.47197 * 330.00265 * 1 2 3 30 30 H 1.09009 * 109.46700 * 149.99812 * 3 2 1 31 31 H 1.08998 * 109.46827 * 30.00386 * 3 2 1 32 32 H 1.08993 * 109.62875 * 248.52263 * 7 6 4 33 33 H 1.08998 * 109.63018 * 9.11040 * 7 6 4 34 34 H 1.09000 * 109.64799 * 294.08078 * 8 7 6 35 35 H 1.09002 * 109.42091 * 173.94887 * 8 7 6 36 36 H 1.08998 * 109.47333 * 54.29830 * 10 9 8 37 37 H 1.08997 * 109.47100 * 174.30287 * 10 9 8 38 38 H 0.96995 * 119.99631 * 179.97438 * 14 13 11 39 39 H 1.09007 * 109.49363 * 303.14281 * 19 9 8 40 40 H 1.09006 * 109.48829 * 183.06545 * 19 9 8 41 41 H 1.09007 * 109.62636 * 350.89271 * 20 6 4 42 42 H 1.08995 * 109.63057 * 111.46977 * 20 6 4 43 43 H 1.08001 * 120.04173 * 0.02562 * 22 21 2 44 44 H 1.08000 * 119.96418 * 180.25734 * 23 22 21 45 45 H 1.08000 * 119.91806 * 179.72454 * 24 23 22 46 46 H 1.07995 * 119.96182 * 179.97438 * 25 24 23 47 47 H 1.08006 * 120.03555 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 8 2.0551 1.0210 -2.3426 6 7 3.1162 2.8484 -1.6670 7 6 3.5974 3.6939 -0.5639 8 6 5.0876 3.9892 -0.7977 9 7 5.2635 4.5603 -2.1397 10 6 6.6446 5.0192 -2.3395 11 6 6.9304 6.1714 -1.4111 12 1 6.1630 6.5270 -0.7396 13 6 8.1717 6.7717 -1.4192 14 7 9.1064 6.3383 -2.2366 15 14 8.5262 8.1994 -0.2680 16 1 7.3179 8.4922 0.5442 17 1 9.6529 7.8425 0.6311 18 1 8.8893 9.3990 -1.0645 19 6 4.8709 3.6026 -3.1820 20 6 3.3774 3.2884 -3.0460 21 6 2.1633 -1.2097 -0.0005 22 6 3.5523 -1.2116 -0.0064 23 6 4.2398 -2.4094 -0.0021 24 6 3.5466 -3.6060 -0.0026 25 6 2.1638 -3.6078 -0.0021 26 6 1.4703 -2.4136 -0.0007 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3634 0.8900 0.5138 30 1 3.1500 1.1382 0.5139 31 1 1.6085 2.0283 0.5139 32 1 3.0346 4.6271 -0.5455 33 1 3.4711 3.1681 0.3825 34 1 5.6612 3.0659 -0.7173 35 1 5.4375 4.7015 -0.0505 36 1 7.3335 4.2017 -2.1267 37 1 6.7738 5.3438 -3.3719 38 1 9.9794 6.7608 -2.2425 39 1 5.4476 2.6846 -3.0684 40 1 5.0638 4.0346 -4.1641 41 1 3.1054 2.4942 -3.7414 42 1 2.7938 4.1834 -3.2615 43 1 4.0943 -0.2773 -0.0100 44 1 5.3198 -2.4116 -0.0024 45 1 4.0866 -4.5413 -0.0037 46 1 1.6257 -4.5441 -0.0029 47 1 0.3902 -2.4157 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:45 Heat of formation + Delta-G solvation = 21.803532 kcal Electronic energy + Delta-G solvation = -26696.660031 eV Core-core repulsion = 23072.978535 eV Total energy + Delta-G solvation = -3623.681497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.34543 -39.28083 -37.58405 -35.99695 -34.43468 -32.50487 -31.40778 -30.92883 -30.06300 -29.01104 -27.98191 -25.76832 -24.93717 -23.31864 -22.48431 -22.04648 -21.22069 -20.37388 -18.69990 -17.87894 -17.25381 -16.45109 -16.15428 -15.73001 -15.34310 -15.23311 -14.78604 -14.50594 -14.38815 -14.32949 -13.98609 -13.73263 -13.62697 -13.58604 -13.12780 -12.94050 -12.67607 -12.35011 -12.23078 -12.01832 -11.88972 -11.49279 -11.33721 -11.11864 -11.01885 -10.88217 -10.79798 -10.68310 -10.55495 -10.33888 -9.93709 -9.52844 -9.30837 -8.96174 -8.54817 -8.46709 -7.41420 -7.37494 -6.10114 -4.12426 1.40056 1.56074 2.65592 2.73241 3.23923 3.25756 3.33648 3.37075 3.86941 4.35099 4.51429 4.66036 4.70492 4.75661 4.91169 5.00463 5.06380 5.15581 5.21673 5.26214 5.32763 5.33873 5.41375 5.47496 5.51496 5.59177 5.59660 5.66069 5.71623 5.81479 5.94465 5.99297 6.17631 6.24596 6.39326 6.40743 6.43475 6.59480 6.62777 6.77731 7.03819 7.17511 7.23577 7.35059 7.51879 7.70178 7.96965 8.07457 8.24537 8.42675 8.94997 9.52390 11.00731 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019082 B = 0.002788 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.010355 B =10040.799139 C =10516.062375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.613 5.613 3 C 0.106 3.894 4 C 0.489 3.511 5 O -0.536 6.536 6 N -0.609 5.609 7 C 0.108 3.892 8 C 0.050 3.950 9 N -0.535 5.535 10 C 0.193 3.807 11 C -0.510 4.510 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.898 3.102 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.041 3.959 20 C 0.119 3.881 21 C 0.225 3.775 22 C -0.193 4.193 23 C -0.071 4.071 24 C -0.182 4.182 25 C -0.075 4.075 26 C -0.196 4.196 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.025 0.975 35 H 0.098 0.902 36 H -0.009 1.009 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.026 0.974 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.672 -14.383 6.877 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.323 5.323 3 C -0.022 4.022 4 C 0.275 3.725 5 O -0.413 6.413 6 N -0.343 5.343 7 C -0.015 4.015 8 C -0.079 4.079 9 N -0.261 5.261 10 C 0.069 3.931 11 C -0.548 4.548 12 H 0.083 0.917 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.088 4.088 20 C -0.004 4.004 21 C 0.124 3.876 22 C -0.215 4.215 23 C -0.090 4.090 24 C -0.202 4.202 25 C -0.094 4.094 26 C -0.218 4.218 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.044 0.956 35 H 0.116 0.884 36 H 0.009 0.991 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.120 -14.151 6.298 22.355 hybrid contribution 1.038 0.311 0.477 1.184 sum -15.082 -13.839 6.774 21.561 Atomic orbital electron populations 1.21652 0.79107 1.02305 1.01623 1.45943 1.04850 1.01903 1.79596 1.21359 0.99519 0.86953 0.94320 1.21394 0.78176 0.80579 0.92391 1.90679 1.51225 1.53332 1.46061 1.48316 1.55476 1.22299 1.08238 1.22128 0.96457 0.94691 0.88244 1.22412 0.92867 0.98520 0.94137 1.62077 1.28673 1.35120 1.00182 1.19732 0.80776 0.94728 0.97904 1.21163 0.97370 1.15383 1.20905 0.91745 1.25004 0.96172 0.97464 0.95964 1.69967 1.04362 1.41719 1.37576 0.86443 0.78214 0.82152 0.80607 1.19624 1.21100 1.20990 1.22399 0.94036 0.94952 0.97409 1.21730 0.96389 0.99808 0.82449 1.17768 0.91138 0.85474 0.93263 1.20678 0.92196 0.98721 1.09899 1.20901 0.99535 0.91952 0.96632 1.20886 0.94277 0.97744 1.07295 1.20851 0.94237 0.97036 0.97281 1.20631 0.99508 0.91064 1.10633 0.93011 0.91188 0.91616 0.87711 0.87792 0.90375 0.90446 0.95650 0.88401 0.99093 0.95023 0.92884 0.95564 0.90090 0.89574 0.91017 0.86517 0.86226 0.86626 0.86390 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 10.23 59.85 0.61 1.46 16 2 N -0.61 -6.99 2.50 -180.99 -0.45 -7.44 16 3 C 0.11 1.14 4.04 -5.19 -0.02 1.12 16 4 C 0.49 7.03 7.78 -10.98 -0.09 6.94 16 5 O -0.54 -9.67 15.88 5.55 0.09 -9.58 16 6 N -0.61 -8.75 3.00 -172.18 -0.52 -9.27 16 7 C 0.11 1.41 6.54 -3.36 -0.02 1.38 16 8 C 0.05 0.86 5.47 -3.46 -0.02 0.84 16 9 N -0.54 -10.82 4.62 -235.47 -1.09 -11.91 16 10 C 0.19 4.83 4.72 -4.98 -0.02 4.81 16 11 C -0.51 -13.61 8.41 -34.44 -0.29 -13.90 16 12 H 0.06 1.68 7.13 -52.49 -0.37 1.31 16 13 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 14 N -0.90 -26.02 13.29 55.43 0.74 -25.29 16 15 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.04 0.73 5.62 -3.71 -0.02 0.71 16 20 C 0.12 1.84 6.60 -3.61 -0.02 1.81 16 21 C 0.22 2.82 6.55 -83.79 -0.55 2.27 16 22 C -0.19 -2.47 9.20 -39.38 -0.36 -2.83 16 23 C -0.07 -0.84 10.04 -39.61 -0.40 -1.24 16 24 C -0.18 -1.96 10.04 -39.55 -0.40 -2.36 16 25 C -0.08 -0.79 10.04 -39.62 -0.40 -1.18 16 26 C -0.20 -2.21 9.21 -39.38 -0.36 -2.57 16 27 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.07 0.51 6.20 -51.93 -0.32 0.19 16 29 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 30 H 0.11 1.04 5.74 -51.92 -0.30 0.74 16 31 H 0.10 0.84 7.74 -51.93 -0.40 0.43 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.75 6.01 -51.93 -0.31 0.44 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 1.79 6.67 -51.93 -0.35 1.45 16 36 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 37 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 41 H 0.09 1.36 7.06 -51.92 -0.37 0.99 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.12 1.48 6.15 -52.49 -0.32 1.15 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.12 1.13 6.14 -52.48 -0.32 0.81 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -32.66 374.10 -10.32 -42.97 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.24 Total: 0.35 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.46 Total: -1.30 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -1.32 Total: -53.91 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.66 -10.32 -42.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.778 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds