Wall clock time and date at job start Tue Mar 31 2020 11:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00221 * 2 1 4 4 C 1.50700 * 109.47257 * 269.99918 * 3 2 1 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99675 * 180.27849 * 4 3 2 7 7 C 1.47079 * 120.88183 * 359.44105 * 6 4 3 8 8 C 1.53702 * 108.27100 * 128.75969 * 7 6 4 9 9 N 1.46903 * 109.25750 * 54.08389 * 8 7 6 10 10 C 1.46895 * 110.99692 * 172.60684 * 9 8 7 11 11 C 1.50705 * 109.47164 * 294.29851 * 10 9 8 12 12 H 1.07997 * 119.99840 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99848 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00056 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00070 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46730 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47357 * 119.99475 * 15 13 11 18 18 H 1.48501 * 109.46878 * 240.00173 * 15 13 11 19 19 C 1.46897 * 111.26549 * 296.75556 * 9 8 7 20 20 C 1.47082 * 120.87981 * 179.72731 * 6 4 3 21 21 C 1.39681 * 119.99540 * 180.02562 * 2 1 3 22 22 C 1.38908 * 120.07059 * 179.72289 * 21 2 1 23 23 C 1.38110 * 119.92452 * 179.77100 * 22 21 2 24 24 C 1.38289 * 120.06778 * 0.50449 * 23 22 21 25 25 C 1.38283 * 120.15541 * 359.75104 * 24 23 22 26 26 C 1.38100 * 120.07164 * 359.97438 * 25 24 23 27 27 H 1.09008 * 109.47294 * 89.99420 * 1 2 3 28 28 H 1.08999 * 109.47518 * 209.99466 * 1 2 3 29 29 H 1.09002 * 109.47197 * 330.00265 * 1 2 3 30 30 H 1.09009 * 109.46700 * 149.99812 * 3 2 1 31 31 H 1.08998 * 109.46827 * 30.00386 * 3 2 1 32 32 H 1.08993 * 109.62875 * 248.52263 * 7 6 4 33 33 H 1.08998 * 109.63018 * 9.11040 * 7 6 4 34 34 H 1.09000 * 109.64799 * 294.08078 * 8 7 6 35 35 H 1.09002 * 109.42091 * 173.94887 * 8 7 6 36 36 H 1.08998 * 109.47333 * 54.29830 * 10 9 8 37 37 H 1.08997 * 109.47100 * 174.30287 * 10 9 8 38 38 H 0.96995 * 119.99631 * 179.97438 * 14 13 11 39 39 H 1.09007 * 109.49363 * 303.14281 * 19 9 8 40 40 H 1.09006 * 109.48829 * 183.06545 * 19 9 8 41 41 H 1.09007 * 109.62636 * 350.89271 * 20 6 4 42 42 H 1.08995 * 109.63057 * 111.46977 * 20 6 4 43 43 H 1.08001 * 120.04173 * 0.02562 * 22 21 2 44 44 H 1.08000 * 119.96418 * 180.25734 * 23 22 21 45 45 H 1.08000 * 119.91806 * 179.72454 * 24 23 22 46 46 H 1.07995 * 119.96182 * 179.97438 * 25 24 23 47 47 H 1.08006 * 120.03555 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 8 2.0551 1.0210 -2.3426 6 7 3.1162 2.8484 -1.6670 7 6 3.5974 3.6939 -0.5639 8 6 5.0876 3.9892 -0.7977 9 7 5.2635 4.5603 -2.1397 10 6 6.6446 5.0192 -2.3395 11 6 6.9304 6.1714 -1.4111 12 1 6.1630 6.5270 -0.7396 13 6 8.1717 6.7717 -1.4192 14 7 9.1064 6.3383 -2.2366 15 14 8.5262 8.1994 -0.2680 16 1 7.3179 8.4922 0.5442 17 1 9.6529 7.8425 0.6311 18 1 8.8893 9.3990 -1.0645 19 6 4.8709 3.6026 -3.1820 20 6 3.3774 3.2884 -3.0460 21 6 2.1633 -1.2097 -0.0005 22 6 3.5523 -1.2116 -0.0064 23 6 4.2398 -2.4094 -0.0021 24 6 3.5466 -3.6060 -0.0026 25 6 2.1638 -3.6078 -0.0021 26 6 1.4703 -2.4136 -0.0007 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3634 0.8900 0.5138 30 1 3.1500 1.1382 0.5139 31 1 1.6085 2.0283 0.5139 32 1 3.0346 4.6271 -0.5455 33 1 3.4711 3.1681 0.3825 34 1 5.6612 3.0659 -0.7173 35 1 5.4375 4.7015 -0.0505 36 1 7.3335 4.2017 -2.1267 37 1 6.7738 5.3438 -3.3719 38 1 9.9794 6.7608 -2.2425 39 1 5.4476 2.6846 -3.0684 40 1 5.0638 4.0346 -4.1641 41 1 3.1054 2.4942 -3.7414 42 1 2.7938 4.1834 -3.2615 43 1 4.0943 -0.2773 -0.0100 44 1 5.3198 -2.4116 -0.0024 45 1 4.0866 -4.5413 -0.0037 46 1 1.6257 -4.5441 -0.0029 47 1 0.3902 -2.4157 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:44 Heat of formation + Delta-G solvation = 1.583573 kcal Electronic energy + Delta-G solvation = -26697.536835 eV Core-core repulsion = 23072.978535 eV Total energy + Delta-G solvation = -3624.558300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.42784 -40.25282 -38.94907 -36.87807 -35.96623 -34.42470 -32.53116 -31.94925 -30.96490 -30.19742 -29.36325 -27.25106 -25.96972 -24.65100 -23.91716 -23.17364 -22.38784 -21.53514 -19.88884 -18.72024 -18.49927 -18.37458 -17.21922 -16.72709 -16.61306 -16.33346 -16.19608 -16.02648 -15.49634 -15.39759 -15.25635 -15.15390 -14.61320 -14.48914 -14.33498 -14.10627 -14.01110 -13.54984 -13.47005 -13.06898 -12.91598 -12.81124 -12.74712 -12.61415 -12.40533 -12.32926 -12.27333 -12.11549 -11.78422 -11.68892 -11.31152 -11.27412 -10.62999 -10.56363 -9.81615 -9.77546 -9.08102 -8.25282 -8.20454 -6.30998 0.54583 0.70385 1.43468 1.44590 1.55485 1.57623 1.80291 2.27090 2.41203 3.00854 3.12196 3.21391 3.49223 3.88334 3.95611 3.98590 4.02677 4.11795 4.21028 4.22991 4.29079 4.38132 4.38981 4.43908 4.52522 4.62272 4.63519 4.70860 4.74545 4.81669 4.85435 4.92676 4.93294 5.01000 5.14993 5.18996 5.21311 5.34207 5.43575 5.61446 5.63977 5.75477 5.96615 6.01535 6.17933 6.25893 6.44179 6.52679 6.54414 6.85503 7.12380 7.39364 8.91283 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019082 B = 0.002788 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.010355 B =10040.799139 C =10516.062375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.618 5.618 3 C 0.108 3.892 4 C 0.488 3.512 5 O -0.577 6.577 6 N -0.611 5.611 7 C 0.119 3.881 8 C 0.047 3.953 9 N -0.537 5.537 10 C 0.208 3.792 11 C -0.518 4.518 12 H 0.072 0.928 13 C -0.001 4.001 14 N -0.938 5.938 15 Si 0.971 3.029 16 H -0.256 1.256 17 H -0.281 1.281 18 H -0.283 1.283 19 C 0.045 3.955 20 C 0.129 3.871 21 C 0.207 3.793 22 C -0.216 4.216 23 C -0.086 4.086 24 C -0.190 4.190 25 C -0.078 4.078 26 C -0.206 4.206 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.014 0.986 35 H 0.089 0.911 36 H -0.042 1.042 37 H 0.002 0.998 38 H 0.263 0.737 39 H 0.011 0.989 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.128 0.872 45 H 0.135 0.865 46 H 0.145 0.855 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.734 -14.310 9.197 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.328 5.328 3 C -0.019 4.019 4 C 0.276 3.724 5 O -0.456 6.456 6 N -0.345 5.345 7 C -0.003 4.003 8 C -0.082 4.082 9 N -0.262 5.262 10 C 0.082 3.918 11 C -0.557 4.557 12 H 0.091 0.909 13 C -0.199 4.199 14 N -0.579 5.579 15 Si 0.796 3.204 16 H -0.179 1.179 17 H -0.207 1.207 18 H -0.209 1.209 19 C -0.084 4.084 20 C 0.005 3.995 21 C 0.106 3.894 22 C -0.238 4.238 23 C -0.105 4.105 24 C -0.210 4.210 25 C -0.096 4.096 26 C -0.228 4.228 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.133 0.867 31 H 0.159 0.841 32 H 0.110 0.890 33 H 0.138 0.862 34 H 0.032 0.968 35 H 0.107 0.893 36 H -0.025 1.025 37 H 0.020 0.980 38 H 0.072 0.928 39 H 0.029 0.971 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.128 0.872 44 H 0.146 0.854 45 H 0.153 0.847 46 H 0.162 0.838 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.215 -14.083 8.641 24.593 hybrid contribution 1.685 0.194 -0.308 1.724 sum -16.530 -13.890 8.333 23.143 Atomic orbital electron populations 1.21794 0.77784 1.04320 1.01041 1.46140 1.05758 1.01643 1.79222 1.21523 1.00881 0.87761 0.91783 1.22144 0.76974 0.79565 0.93671 1.90662 1.52907 1.54331 1.47738 1.48410 1.55462 1.22724 1.07915 1.22170 0.92891 0.95794 0.89441 1.22495 0.96190 0.97466 0.92021 1.62019 1.25233 1.36588 1.02358 1.19377 0.82950 0.93543 0.95945 1.21484 0.97681 1.15545 1.20962 0.90949 1.25966 0.95980 1.00362 0.97584 1.70110 1.04910 1.43379 1.39460 0.85298 0.78480 0.78230 0.78393 1.17942 1.20698 1.20873 1.22406 0.95734 0.93591 0.96706 1.21527 0.94192 1.00096 0.83646 1.18019 0.91263 0.86532 0.93621 1.20792 0.92791 0.98907 1.11355 1.21142 1.00235 0.92264 0.96847 1.21194 0.94822 0.98169 1.06785 1.21226 0.94319 0.97980 0.96110 1.20935 1.00514 0.90975 1.10338 0.94827 0.89686 0.89182 0.86739 0.84069 0.89026 0.86203 0.96795 0.89267 1.02468 0.97975 0.92774 0.97112 0.90383 0.90027 0.89920 0.87153 0.85432 0.84707 0.83773 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.42 10.23 127.77 1.31 2.73 16 2 N -0.62 -12.84 2.50 -726.54 -1.81 -14.65 16 3 C 0.11 2.03 4.04 85.63 0.35 2.37 16 4 C 0.49 13.30 7.78 87.66 0.68 13.98 16 5 O -0.58 -20.56 15.88 -3.04 -0.05 -20.61 16 6 N -0.61 -16.61 3.00 -817.05 -2.45 -19.06 16 7 C 0.12 2.79 6.54 86.51 0.57 3.36 16 8 C 0.05 1.60 5.47 86.54 0.47 2.08 16 9 N -0.54 -22.07 4.62 -898.88 -4.15 -26.22 16 10 C 0.21 10.84 4.72 85.56 0.40 11.24 16 11 C -0.52 -28.02 8.41 25.60 0.22 -27.81 16 12 H 0.07 3.72 7.13 -2.91 -0.02 3.70 16 13 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 14 N -0.94 -55.80 13.29 21.45 0.28 -55.52 16 15 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 16 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 19 C 0.04 1.64 5.62 86.38 0.49 2.12 16 20 C 0.13 3.92 6.60 86.35 0.57 4.49 16 21 C 0.21 4.95 6.55 38.21 0.25 5.20 16 22 C -0.22 -5.47 9.20 22.40 0.21 -5.27 16 23 C -0.09 -1.99 10.04 22.25 0.22 -1.77 16 24 C -0.19 -3.84 10.04 22.29 0.22 -3.62 16 25 C -0.08 -1.48 10.04 22.25 0.22 -1.26 16 26 C -0.21 -4.29 9.21 22.40 0.21 -4.08 16 27 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.08 1.02 6.20 -2.39 -0.01 1.00 16 29 H 0.09 0.92 7.89 -2.39 -0.02 0.90 16 30 H 0.11 1.97 5.74 -2.38 -0.01 1.96 16 31 H 0.14 1.61 7.74 -2.39 -0.02 1.59 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.12 1.83 6.01 -2.39 -0.01 1.82 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.09 3.20 6.67 -2.39 -0.02 3.18 16 36 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 37 H 0.00 0.12 7.97 -2.39 -0.02 0.10 16 38 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 39 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 40 H 0.08 2.84 7.99 -2.38 -0.02 2.82 16 41 H 0.08 2.60 7.06 -2.38 -0.02 2.58 16 42 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.11 2.80 6.15 -2.91 -0.02 2.78 16 44 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 45 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 46 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 47 H 0.14 2.27 6.14 -2.91 -0.02 2.25 16 Total: -1.00 -73.15 374.10 1.64 -71.50 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.96 Total: 15.73 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 6.84 Total: 4.17 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -8.13 Total: -115.45 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.05 Total: -20.61 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -73.15 1.64 -71.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.088 kcal (2) G-P(sol) polarization free energy of solvation -73.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds