Wall clock time and date at job start Tue Mar 31 2020 11:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99909 * 2 1 4 4 C 1.39707 * 119.99708 * 179.97438 * 2 1 3 5 5 C 1.39018 * 120.00156 * 180.02562 * 4 2 1 6 6 C 1.38209 * 120.21710 * 179.97438 * 5 4 2 7 7 C 1.38019 * 120.22907 * 359.76089 * 6 5 4 8 8 C 1.39576 * 120.00511 * 0.51598 * 7 6 5 9 9 C 1.47859 * 120.11319 * 179.73706 * 8 7 6 10 10 O 1.21545 * 120.00307 * 146.93009 * 9 8 7 11 11 N 1.34777 * 119.99825 * 326.93417 * 9 8 7 12 12 C 1.47085 * 120.88260 * 354.65581 * 11 9 8 13 13 C 1.53236 * 108.52110 * 231.16630 * 12 11 9 14 14 N 1.46903 * 109.33963 * 306.16455 * 13 12 11 15 15 C 1.46901 * 110.99740 * 187.25383 * 14 13 12 16 16 C 1.50703 * 109.46768 * 170.00361 * 15 14 13 17 17 H 1.07998 * 120.00212 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00031 * 179.72369 * 16 15 14 19 19 N 1.31514 * 120.00097 * 180.27702 * 18 16 15 20 20 Si 1.86805 * 119.99694 * 0.28139 * 18 16 15 21 21 H 1.48496 * 109.47134 * 89.99740 * 20 18 16 22 22 H 1.48500 * 109.46544 * 209.99715 * 20 18 16 23 23 H 1.48501 * 109.47177 * 329.99450 * 20 18 16 24 24 C 1.46905 * 111.26356 * 63.11087 * 14 13 12 25 25 C 1.47086 * 120.88148 * 174.63830 * 11 9 8 26 26 C 1.38639 * 120.00563 * 359.97438 * 4 2 1 27 27 H 1.09004 * 109.47087 * 270.00240 * 1 2 3 28 28 H 1.09005 * 109.46676 * 29.99827 * 1 2 3 29 29 H 1.08997 * 109.47487 * 149.99686 * 1 2 3 30 30 H 1.09001 * 109.47013 * 269.99765 * 3 2 1 31 31 H 1.08995 * 109.47357 * 30.00106 * 3 2 1 32 32 H 1.09004 * 109.47033 * 150.00068 * 3 2 1 33 33 H 1.08001 * 119.89534 * 359.97438 * 5 4 2 34 34 H 1.07999 * 119.88313 * 180.02562 * 6 5 4 35 35 H 1.07999 * 119.99789 * 180.25230 * 7 6 5 36 36 H 1.08998 * 109.62717 * 111.45469 * 12 11 9 37 37 H 1.09001 * 109.78531 * 350.97107 * 12 11 9 38 38 H 1.09009 * 109.49169 * 186.21510 * 13 12 11 39 39 H 1.08992 * 109.49701 * 66.13043 * 13 12 11 40 40 H 1.08996 * 109.47093 * 50.01217 * 15 14 13 41 41 H 1.08994 * 109.47320 * 290.00009 * 15 14 13 42 42 H 0.97000 * 119.99749 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.49191 * 56.85353 * 24 14 13 44 44 H 1.09006 * 109.48884 * 176.93463 * 24 14 13 45 45 H 1.09002 * 109.62708 * 248.54333 * 25 11 9 46 46 H 1.09000 * 109.62912 * 9.12484 * 25 11 9 47 47 H 1.07999 * 120.11355 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1635 -1.2099 0.0005 5 6 3.5537 -1.2100 0.0011 6 6 4.2492 -2.4044 0.0022 7 6 3.5683 -3.6049 0.0077 8 6 2.1726 -3.6159 0.0013 9 6 1.4408 -4.9007 0.0013 10 8 0.3709 -4.9907 0.5710 11 7 1.9602 -5.9720 -0.6303 12 6 3.1937 -5.8563 -1.4231 13 6 2.9404 -6.4604 -2.8084 14 7 2.4259 -7.8279 -2.6562 15 6 2.3324 -8.5030 -3.9575 16 6 2.0401 -9.9660 -3.7445 17 1 1.9340 -10.3552 -2.7427 18 6 1.9020 -10.8064 -4.8288 19 7 1.6415 -12.0821 -4.6431 20 14 2.0850 -10.1331 -6.5616 21 1 3.5058 -10.2294 -6.9826 22 1 1.2385 -10.9231 -7.4915 23 1 1.6560 -8.7116 -6.5882 24 6 1.1298 -7.8356 -1.9648 25 6 1.3088 -7.2879 -0.5449 26 6 1.4704 -2.4106 0.0016 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 2.3792 1.5833 -1.0277 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1384 0.5138 33 1 4.0921 -0.2738 0.0007 34 1 5.3291 -2.3982 0.0030 35 1 4.1155 -4.5360 0.0126 36 1 3.9991 -6.3994 -0.9285 37 1 3.4691 -4.8067 -1.5260 38 1 3.8737 -6.4835 -3.3713 39 1 2.2086 -5.8536 -3.3416 40 1 3.2765 -8.3952 -4.4914 41 1 1.5304 -8.0538 -4.5431 42 1 1.5447 -12.6733 -5.4059 43 1 0.4231 -7.2096 -2.5097 44 1 0.7498 -8.8561 -1.9158 45 1 1.9330 -7.9686 0.0341 46 1 0.3346 -7.1839 -0.0670 47 1 0.3904 -2.4128 0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:03 Heat of formation + Delta-G solvation = 34.866421 kcal Electronic energy + Delta-G solvation = -26580.128864 eV Core-core repulsion = 22957.013817 eV Total energy + Delta-G solvation = -3623.115047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.60574 -39.20758 -37.53645 -36.37904 -34.49650 -32.39744 -31.70933 -30.99681 -30.02413 -28.86998 -28.37810 -25.88570 -25.13298 -23.83729 -22.91867 -21.83824 -21.18573 -20.40392 -19.07167 -17.64487 -16.80366 -16.74496 -16.19934 -15.70197 -15.43105 -15.41075 -15.08283 -14.60462 -14.54544 -14.28455 -14.06906 -13.71726 -13.66168 -13.45599 -12.99932 -12.98383 -12.68208 -12.59641 -12.42739 -12.39496 -12.20668 -11.59891 -11.50264 -11.27286 -11.24344 -10.95983 -10.75427 -10.54943 -10.35194 -10.08371 -9.92125 -9.67470 -9.31961 -9.10865 -8.59751 -8.47435 -7.55623 -7.45317 -6.07985 -4.05852 0.86437 1.34747 2.72832 2.88509 3.13097 3.26285 3.34137 3.35680 3.74018 4.39294 4.41071 4.61116 4.65474 4.66728 4.84073 4.89821 5.00389 5.02194 5.18732 5.23238 5.28049 5.28315 5.33737 5.37012 5.38780 5.43529 5.51161 5.60098 5.69266 5.76910 5.91004 5.97697 5.98635 6.11637 6.22531 6.29613 6.37166 6.47798 6.51843 6.67406 6.83893 6.90716 6.94089 7.16516 7.52018 7.53502 7.82749 7.96153 8.24687 8.61004 8.99772 9.53385 11.04908 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.002712 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.038381 B =10323.686596 C =10553.298019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.640 5.640 3 C 0.095 3.905 4 C 0.205 3.795 5 C -0.179 4.179 6 C -0.079 4.079 7 C -0.151 4.151 8 C -0.078 4.078 9 C 0.556 3.444 10 O -0.544 6.544 11 N -0.600 5.600 12 C 0.097 3.903 13 C 0.036 3.964 14 N -0.526 5.526 15 C 0.163 3.837 16 C -0.511 4.511 17 H 0.082 0.918 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.875 3.125 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.269 1.269 24 C 0.051 3.949 25 C 0.115 3.885 26 C -0.142 4.142 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.027 0.973 40 H 0.026 0.974 41 H -0.012 1.012 42 H 0.264 0.736 43 H 0.025 0.975 44 H 0.103 0.897 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.800 26.413 9.173 28.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.352 5.352 3 C -0.048 4.048 4 C 0.104 3.896 5 C -0.202 4.202 6 C -0.098 4.098 7 C -0.171 4.171 8 C -0.082 4.082 9 C 0.345 3.655 10 O -0.423 6.423 11 N -0.332 5.332 12 C -0.025 4.025 13 C -0.093 4.093 14 N -0.251 5.251 15 C 0.036 3.964 16 C -0.549 4.549 17 H 0.100 0.900 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.193 1.193 24 C -0.078 4.078 25 C -0.007 4.007 26 C -0.165 4.165 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.006 0.994 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.414 26.082 9.651 28.019 hybrid contribution -0.422 0.677 -1.642 1.825 sum 2.993 26.759 8.009 28.092 Atomic orbital electron populations 1.21664 0.79319 1.02802 1.01381 1.46289 1.05075 1.02961 1.80892 1.21620 0.97220 0.84871 1.01138 1.17679 0.91212 0.85561 0.95139 1.20822 0.91915 0.98875 1.08570 1.20845 0.99746 0.91464 0.97717 1.21392 0.92888 0.98990 1.03878 1.19662 0.93793 0.92818 1.01880 1.18378 0.84789 0.83505 0.78860 1.90745 1.21592 1.84419 1.45568 1.48105 1.26715 1.09281 1.49138 1.22466 0.86419 1.01947 0.91684 1.22479 1.00442 0.90970 0.95434 1.61926 1.26024 1.13410 1.23752 1.20175 0.95445 0.95392 0.85343 1.21013 1.48124 0.90370 0.95424 0.90029 1.24898 0.94800 0.94739 0.98853 1.69891 1.49119 1.03757 1.30981 0.86868 0.78457 0.79368 0.85085 1.20114 1.21201 1.19347 1.22378 0.90658 1.02330 0.92453 1.21891 0.98714 0.81888 0.98176 1.20679 1.00119 0.89656 1.06068 0.93210 0.91507 0.91102 0.93386 0.91566 0.91298 0.85780 0.85413 0.84692 0.90354 0.88332 0.89980 0.95463 0.95630 0.99385 0.92620 0.95678 0.87874 0.90539 0.89147 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.19 59.85 0.61 1.27 16 2 N -0.64 -5.51 3.41 -187.59 -0.64 -6.14 16 3 C 0.09 0.54 10.19 59.84 0.61 1.15 16 4 C 0.21 2.17 6.55 -83.83 -0.55 1.62 16 5 C -0.18 -1.64 9.20 -39.30 -0.36 -2.00 16 6 C -0.08 -0.71 10.02 -39.67 -0.40 -1.11 16 7 C -0.15 -1.64 7.38 -39.16 -0.29 -1.93 16 8 C -0.08 -1.04 5.36 -104.99 -0.56 -1.60 16 9 C 0.56 8.95 7.42 -12.32 -0.09 8.86 16 10 O -0.54 -10.38 16.23 5.33 0.09 -10.29 16 11 N -0.60 -9.33 3.01 -173.56 -0.52 -9.85 16 12 C 0.10 1.32 4.87 -3.60 -0.02 1.30 16 13 C 0.04 0.59 5.62 -3.70 -0.02 0.57 16 14 N -0.53 -10.67 4.62 -235.76 -1.09 -11.76 16 15 C 0.16 3.86 3.79 -4.97 -0.02 3.84 16 16 C -0.51 -14.21 8.96 -34.44 -0.31 -14.52 16 17 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 20 Si 0.87 21.26 27.47 -169.99 -4.67 16.59 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 24 C 0.05 0.98 5.46 -3.70 -0.02 0.96 16 25 C 0.12 1.92 6.61 -3.60 -0.02 1.90 16 26 C -0.14 -1.78 8.76 -38.97 -0.34 -2.12 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 29 H 0.07 0.57 6.20 -51.93 -0.32 0.25 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 32 H 0.07 0.34 6.19 -51.93 -0.32 0.02 16 33 H 0.12 0.85 6.13 -52.49 -0.32 0.53 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.14 1.33 5.74 -52.49 -0.30 1.03 16 36 H 0.08 0.99 7.97 -51.93 -0.41 0.58 16 37 H 0.10 1.13 4.51 -51.93 -0.23 0.90 16 38 H 0.08 1.23 7.99 -51.92 -0.41 0.82 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.03 0.60 7.40 -51.93 -0.38 0.22 16 41 H -0.01 -0.28 7.17 -51.93 -0.37 -0.66 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.10 2.18 6.67 -51.93 -0.35 1.83 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.09 1.52 7.04 -51.93 -0.37 1.15 16 47 H 0.13 1.67 6.04 -52.49 -0.32 1.36 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -33.38 364.92 -9.49 -42.87 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.04 Total: -0.51 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.88 Total: 0.05 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -1.48 Total: -54.20 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.38 -9.49 -42.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.733 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds