Wall clock time and date at job start Tue Mar 31 2020 11:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99909 * 2 1 4 4 C 1.39707 * 119.99708 * 179.97438 * 2 1 3 5 5 C 1.39018 * 120.00156 * 180.02562 * 4 2 1 6 6 C 1.38209 * 120.21710 * 179.97438 * 5 4 2 7 7 C 1.38019 * 120.22907 * 359.76089 * 6 5 4 8 8 C 1.39576 * 120.00511 * 0.51598 * 7 6 5 9 9 C 1.47859 * 120.11319 * 179.73706 * 8 7 6 10 10 O 1.21545 * 120.00307 * 146.93009 * 9 8 7 11 11 N 1.34777 * 119.99825 * 326.93417 * 9 8 7 12 12 C 1.47085 * 120.88260 * 354.65581 * 11 9 8 13 13 C 1.53236 * 108.52110 * 231.16630 * 12 11 9 14 14 N 1.46903 * 109.33963 * 306.16455 * 13 12 11 15 15 C 1.46901 * 110.99740 * 187.25383 * 14 13 12 16 16 C 1.50703 * 109.46768 * 170.00361 * 15 14 13 17 17 H 1.07998 * 120.00212 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00031 * 179.72369 * 16 15 14 19 19 N 1.31514 * 120.00097 * 180.27702 * 18 16 15 20 20 Si 1.86805 * 119.99694 * 0.28139 * 18 16 15 21 21 H 1.48496 * 109.47134 * 89.99740 * 20 18 16 22 22 H 1.48500 * 109.46544 * 209.99715 * 20 18 16 23 23 H 1.48501 * 109.47177 * 329.99450 * 20 18 16 24 24 C 1.46905 * 111.26356 * 63.11087 * 14 13 12 25 25 C 1.47086 * 120.88148 * 174.63830 * 11 9 8 26 26 C 1.38639 * 120.00563 * 359.97438 * 4 2 1 27 27 H 1.09004 * 109.47087 * 270.00240 * 1 2 3 28 28 H 1.09005 * 109.46676 * 29.99827 * 1 2 3 29 29 H 1.08997 * 109.47487 * 149.99686 * 1 2 3 30 30 H 1.09001 * 109.47013 * 269.99765 * 3 2 1 31 31 H 1.08995 * 109.47357 * 30.00106 * 3 2 1 32 32 H 1.09004 * 109.47033 * 150.00068 * 3 2 1 33 33 H 1.08001 * 119.89534 * 359.97438 * 5 4 2 34 34 H 1.07999 * 119.88313 * 180.02562 * 6 5 4 35 35 H 1.07999 * 119.99789 * 180.25230 * 7 6 5 36 36 H 1.08998 * 109.62717 * 111.45469 * 12 11 9 37 37 H 1.09001 * 109.78531 * 350.97107 * 12 11 9 38 38 H 1.09009 * 109.49169 * 186.21510 * 13 12 11 39 39 H 1.08992 * 109.49701 * 66.13043 * 13 12 11 40 40 H 1.08996 * 109.47093 * 50.01217 * 15 14 13 41 41 H 1.08994 * 109.47320 * 290.00009 * 15 14 13 42 42 H 0.97000 * 119.99749 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.49191 * 56.85353 * 24 14 13 44 44 H 1.09006 * 109.48884 * 176.93463 * 24 14 13 45 45 H 1.09002 * 109.62708 * 248.54333 * 25 11 9 46 46 H 1.09000 * 109.62912 * 9.12484 * 25 11 9 47 47 H 1.07999 * 120.11355 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1635 -1.2099 0.0005 5 6 3.5537 -1.2100 0.0011 6 6 4.2492 -2.4044 0.0022 7 6 3.5683 -3.6049 0.0077 8 6 2.1726 -3.6159 0.0013 9 6 1.4408 -4.9007 0.0013 10 8 0.3709 -4.9907 0.5710 11 7 1.9602 -5.9720 -0.6303 12 6 3.1937 -5.8563 -1.4231 13 6 2.9404 -6.4604 -2.8084 14 7 2.4259 -7.8279 -2.6562 15 6 2.3324 -8.5030 -3.9575 16 6 2.0401 -9.9660 -3.7445 17 1 1.9340 -10.3552 -2.7427 18 6 1.9020 -10.8064 -4.8288 19 7 1.6415 -12.0821 -4.6431 20 14 2.0850 -10.1331 -6.5616 21 1 3.5058 -10.2294 -6.9826 22 1 1.2385 -10.9231 -7.4915 23 1 1.6560 -8.7116 -6.5882 24 6 1.1298 -7.8356 -1.9648 25 6 1.3088 -7.2879 -0.5449 26 6 1.4704 -2.4106 0.0016 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 2.3792 1.5833 -1.0277 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1384 0.5138 33 1 4.0921 -0.2738 0.0007 34 1 5.3291 -2.3982 0.0030 35 1 4.1155 -4.5360 0.0126 36 1 3.9991 -6.3994 -0.9285 37 1 3.4691 -4.8067 -1.5260 38 1 3.8737 -6.4835 -3.3713 39 1 2.2086 -5.8536 -3.3416 40 1 3.2765 -8.3952 -4.4914 41 1 1.5304 -8.0538 -4.5431 42 1 1.5447 -12.6733 -5.4059 43 1 0.4231 -7.2096 -2.5097 44 1 0.7498 -8.8561 -1.9158 45 1 1.9330 -7.9686 0.0341 46 1 0.3346 -7.1839 -0.0670 47 1 0.3904 -2.4128 0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:03 Heat of formation + Delta-G solvation = 12.337497 kcal Electronic energy + Delta-G solvation = -26581.105792 eV Core-core repulsion = 22957.013817 eV Total energy + Delta-G solvation = -3624.091975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.69583 -40.16049 -38.95776 -37.13071 -36.01101 -34.43154 -32.76367 -31.99842 -31.03037 -30.36023 -29.11609 -27.46318 -25.83301 -25.07978 -24.15809 -23.26967 -22.26430 -21.65732 -20.24672 -19.02424 -18.49060 -17.81582 -17.12913 -16.69723 -16.55022 -16.30963 -16.23900 -16.06278 -15.92803 -15.61128 -15.30736 -14.96515 -14.67038 -14.61139 -14.46952 -14.20296 -13.82040 -13.43932 -13.34579 -13.19437 -13.15758 -12.96645 -12.87472 -12.54187 -12.46178 -12.32452 -12.18444 -12.05577 -11.88498 -11.82450 -11.45388 -11.00699 -10.78010 -10.67068 -10.00188 -9.76254 -9.09303 -8.27849 -8.24135 -6.31416 -0.02247 0.58044 1.35115 1.36953 1.46927 1.69145 1.89449 2.24220 2.34543 2.87850 3.04462 3.14841 3.39895 3.91421 3.93349 4.01001 4.08747 4.17162 4.20451 4.26438 4.34880 4.37559 4.39861 4.49610 4.53687 4.56809 4.69820 4.72123 4.79197 4.80211 4.82262 4.84323 4.91907 4.92005 4.96496 5.01015 5.09395 5.22174 5.36765 5.45300 5.51477 5.54638 5.81266 5.92408 6.23752 6.29275 6.34612 6.48734 6.60953 6.74907 7.01120 7.32110 8.88482 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.002712 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.038381 B =10323.686596 C =10553.298019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.645 5.645 3 C 0.089 3.911 4 C 0.199 3.801 5 C -0.173 4.173 6 C -0.069 4.069 7 C -0.155 4.155 8 C -0.098 4.098 9 C 0.553 3.447 10 O -0.586 6.586 11 N -0.602 5.602 12 C 0.104 3.896 13 C 0.033 3.967 14 N -0.536 5.536 15 C 0.172 3.828 16 C -0.516 4.516 17 H 0.041 0.959 18 C 0.008 3.992 19 N -0.947 5.947 20 Si 0.947 3.053 21 H -0.260 1.260 22 H -0.285 1.285 23 H -0.255 1.255 24 C 0.058 3.942 25 C 0.125 3.875 26 C -0.164 4.164 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.153 0.847 34 H 0.163 0.837 35 H 0.147 0.853 36 H 0.095 0.905 37 H 0.127 0.873 38 H 0.103 0.897 39 H 0.022 0.978 40 H 0.038 0.962 41 H -0.018 1.018 42 H 0.267 0.733 43 H 0.015 0.985 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.515 30.022 8.415 31.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.356 5.356 3 C -0.053 4.053 4 C 0.097 3.903 5 C -0.196 4.196 6 C -0.088 4.088 7 C -0.175 4.175 8 C -0.102 4.102 9 C 0.344 3.656 10 O -0.468 6.468 11 N -0.333 5.333 12 C -0.018 4.018 13 C -0.095 4.095 14 N -0.261 5.261 15 C 0.045 3.955 16 C -0.555 4.555 17 H 0.059 0.941 18 C -0.189 4.189 19 N -0.588 5.588 20 Si 0.771 3.229 21 H -0.185 1.185 22 H -0.211 1.211 23 H -0.179 1.179 24 C -0.071 4.071 25 C 0.003 3.997 26 C -0.188 4.188 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.170 0.830 34 H 0.181 0.819 35 H 0.164 0.836 36 H 0.113 0.887 37 H 0.145 0.855 38 H 0.122 0.878 39 H 0.040 0.960 40 H 0.056 0.944 41 H 0.000 1.000 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.153 29.739 8.901 31.646 hybrid contribution -1.286 -0.370 -1.300 1.866 sum 4.867 29.368 7.600 30.724 Atomic orbital electron populations 1.21724 0.79148 1.03119 1.01511 1.46560 1.05566 1.03351 1.80157 1.21828 0.97687 0.83783 1.02005 1.17846 0.92101 0.85558 0.94791 1.21213 0.91247 1.00317 1.06799 1.21237 1.01407 0.90423 0.95690 1.21531 0.91607 1.00476 1.03902 1.19513 0.94886 0.91223 1.04565 1.18925 0.84364 0.84397 0.77895 1.90710 1.23562 1.85135 1.47360 1.48167 1.27255 1.08543 1.49327 1.22644 0.85701 1.03686 0.89761 1.22660 1.00894 0.88371 0.97593 1.61847 1.26144 1.16132 1.21961 1.19950 0.95465 0.92996 0.87094 1.21247 1.47625 0.92804 0.93787 0.94074 1.25838 0.94453 0.94876 1.03779 1.70048 1.50775 1.05432 1.32507 0.85720 0.79131 0.79142 0.78950 1.18504 1.21055 1.17872 1.22222 0.90329 1.00561 0.93957 1.21641 0.98940 0.82942 0.96208 1.20639 0.99589 0.90625 1.07928 0.93202 0.89351 0.92617 0.92624 0.90086 0.90260 0.82969 0.81920 0.83579 0.88698 0.85514 0.87846 0.95964 0.94370 1.00044 0.92450 0.96647 0.90803 0.89957 0.89757 0.86824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.21 10.19 127.77 1.30 2.51 16 2 N -0.64 -9.80 3.41 -747.41 -2.55 -12.35 16 3 C 0.09 0.72 10.19 127.77 1.30 2.02 16 4 C 0.20 3.83 6.55 38.17 0.25 4.08 16 5 C -0.17 -2.51 9.20 22.45 0.21 -2.30 16 6 C -0.07 -0.95 10.02 22.21 0.22 -0.73 16 7 C -0.15 -2.91 7.38 22.54 0.17 -2.75 16 8 C -0.10 -2.54 5.36 -20.11 -0.11 -2.65 16 9 C 0.55 18.01 7.42 86.79 0.64 18.66 16 10 O -0.59 -23.35 16.23 -3.86 -0.06 -23.41 16 11 N -0.60 -18.50 3.01 -821.32 -2.47 -20.97 16 12 C 0.10 2.56 4.87 86.35 0.42 2.98 16 13 C 0.03 1.02 5.62 86.38 0.49 1.51 16 14 N -0.54 -21.64 4.62 -899.81 -4.16 -25.80 16 15 C 0.17 8.10 3.79 85.56 0.32 8.43 16 16 C -0.52 -29.53 8.96 25.60 0.23 -29.30 16 17 H 0.04 2.62 7.37 -2.91 -0.02 2.60 16 18 C 0.01 0.46 5.47 84.65 0.46 0.92 16 19 N -0.95 -59.03 13.96 21.45 0.30 -58.73 16 20 Si 0.95 43.70 27.47 68.60 1.88 45.58 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 24 C 0.06 2.34 5.46 86.38 0.47 2.81 16 25 C 0.13 4.32 6.61 86.35 0.57 4.89 16 26 C -0.16 -4.09 8.76 22.67 0.20 -3.89 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 0.80 8.07 -2.38 -0.02 0.78 16 29 H 0.06 0.93 6.20 -2.39 -0.01 0.92 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.08 0.43 8.07 -2.39 -0.02 0.41 16 32 H 0.08 0.48 6.19 -2.38 -0.01 0.46 16 33 H 0.15 1.32 6.13 -2.91 -0.02 1.30 16 34 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.15 2.36 5.74 -2.91 -0.02 2.34 16 36 H 0.09 2.10 7.97 -2.39 -0.02 2.08 16 37 H 0.13 2.50 4.51 -2.39 -0.01 2.48 16 38 H 0.10 2.75 7.99 -2.38 -0.02 2.73 16 39 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.04 1.72 7.40 -2.39 -0.02 1.70 16 41 H -0.02 -0.88 7.17 -2.39 -0.02 -0.89 16 42 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 3.36 6.67 -2.38 -0.02 3.34 16 45 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 46 H 0.08 3.00 7.04 -2.39 -0.02 2.98 16 47 H 0.11 3.11 6.04 -2.91 -0.02 3.09 16 Total: -1.00 -75.67 364.92 1.01 -74.66 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.92 Total: 13.83 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 7.15 Total: 7.20 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -8.88 Total: -117.86 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.06 Total: -23.41 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.58 kcal Total: -75.67 1.01 -74.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.998 kcal (2) G-P(sol) polarization free energy of solvation -75.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds